Title of Invention

A COMPOSITION CONSISTING ESSENTIALLY OF A PHARMACEUTICALLY ACCEPTABLE EXCIPIENT AND A POLYNUCLEOTIDE ABSORBED TO A CATIONIC MICROPARTICLE

Abstract A composition consisting essentially of a pharmaceutically acceptable excipient and a polynucleotide adsorbed to a cationic microparticle, wherein said polynucleotide comprises a coding sequence that encodes a hepatitis C virus (HCV) immunogen operably linked to control elements that direct the transcription and translation of said coding sequence in vivo, and further wherein the HCV immunogen is an immunogenic HCV E1E2 complex with a contiguous sequence of amino acids having a at least 80% sequence identity to the contiguous sequence of amino acids depicted at positions 192-809 of figures 2A- 2C, with the proviso that said polynucleotide does not encode an HCV immunogen other than the HCV El E2 complex.
Full Text COMPOSITIONS COMPRISING CATIONIC MICROPARTICLBS AND
HCV E1E2 DNA AND METHODS OF USE THEREOF
Technical Field
The present invention pertains generally to immunogenic compositions
comprising DNA encoding HCV immunogens. In particular, the invention relates to
compositions comprising DNA encoding HCV E1E2 polypeptides adsorbed to
cationic microparticles and methods of using fhesame.
BACKGROUND
Hepatitis C virus (HCV) was identified over a decade ago and is now known
to be the leading cause of non-A and non-B viral hepatitis (Choo et al, Science (1989)
244:359-362; Armstrong et al., Hepatohgy (2000) 31_:777). HCV infects
approximately 3% of the world population, an estimated 200 million people (Cohen,
J., Science (1999) 285:26). About 30,000 newly acquired HCV infections occur in
the United States annually. Additionally, there is a large incidence of HCV infection
in developing countries. Although the immune response is capable of clearing HCV
infection, the majority of infections become chronic. Most acute infections remain
asymptomatic and liver disease usually occurs only after years of chronic infection.
The viral genomic sequence of HCV is known, as are methods for obtaining
the sequence. See, e.g., International Publication Nos. WO 89/04669; WO 90/11089;
and WO 90/14436. HCV has a 9.5 kb positive-sense, single-stranded RNA genome
and is a member of the Flaviridae family of viruses. At least six distinct, but related
genotypes of HCV, based on phylogenetic analyses, have been identified (Simmonds
etal.,J. Gen. Virol. (1993) 74:2391-2399). The virus encodes a single polyprotein
having more than 3000 amino acid residues (Choo et al., Science (1989) 244:359-
362; Choo et al., Proc. Natl. Acad. Sci. USA (1991) 88:2451-2455; Han et al., Proc.
Natl. Acad. Sci. USA (1991) 88:1711-1715). The polyprotein is processed co- and
post-translationally into both structural and non-structural (NS) proteins. Two of the
structural proteins are envelope glycoproteins known as El and E2. The HCV El and
E2 glycoproteins have been shown to be protective against viral challenge in primate
studies. (Choo et al., Proc. Natl. Acad. Sci. USA (1994) 91; 1294-1298).
Currently, the only available therapies for HCV are IFN-ct and ribavirin.
Unfortunately, these agents are effective in less than half the patients treated (Poynard
et al., Lancet (1998) 352:1426; McHutchison et al., Engl J. Med. (1998) 339:1485).
Therefore, there is an urgent need for the development of efficacious vaccines to
prevent HCV infection, as well as for immunotherapies to be used as an alternative, or
in conjunction with existing therapies.
T cell immunity to HCV may determine the outcome of HCV infection and
disease (Missale et al, J. Clin. Invest. (1996) 98:706; Cooper et al., Immunity (1999)
10:439; and Lechner et al., J. Exp. Med. (2000) 191:1499). One study concluded mat
individuals displaying predominant ThO/Thl CD4+ T helper responses resolved their
HCV infections, while those with Th2-type responses tended to progress to chronichy
(Tsai et al., Hepatology (1997) 25:449-458). In addition, it has been shown mat mete
is an inverse correlation between the frequency of HCV-specific cytotoxic T
lymphocytes (CTLs) and viral load (Nelson, et al., J. Immunol. (1997) 158:1473).
Recently, control of HCV in chimpanzees was shown to be associated with a Thl T
cell response (Major et al., J. Virol. (2002) 76:6586-6595). Therefore, HCV-specific
T cell responses appear to play an important role in controlling HCV infection. A role
for antibodies in protection has also been proposed based on rare cases of spontaneous
resolution of chronic infection in patients (Abrignani et al., J. Hepatol. (1999)
31Suppll:259-263). Additionally, protection in primates has been associated directly
with the titer of anti-El E2 antibodies, evidencing a possible role for antibodies in
protection (Choo et al., Proc. Natl. Acad. Sci. USA (1994) 91; 1294-1298).
DNA vaccines have been shown to induce potent long-term CTL and Thl
cellular responses in a range of animal models (Gurunathan et al., Ann. Rev. Immunol.
(2000) JJ$:927-974). Although DNA vaccines have been administered to human
volunteers in a number of clinical trials and appear safe, their potency has been low
relative to the responses achieved in smaller animal models (Gurunathan et al., Ann.
Rev. Immunol. (2000) 18:927-974). For example, although detectable CTL responses
have been induced in human volunteers, even high doses of DNA (2.5 mg) have
sometimes failed to induce detectable antibody responses (Wang et al., Science (1998)
282:476-480). Antibody responses were not detected in human volunteers even when
a needle-free jet injection device was used for DNA delivery in an attempt to improve
potency (Epstein et al., Hum. Gen. Ther (2002) 13:1551-1560). Hence, there is a
clear need for improving the potency and efficacy of DNA vaccines, particularly for
humoral responses.
Particulate carriers with adsorbed or entrapped antigens have been used in
attempts to elicit adequate immune responses. Examples of particulate carriers
include those derived from polymemyl memacrylate polymers, as well as
microparticles derived from poryflactides) (see, e.g., U.S. Patent No. 3,773,919),
poryOactide-co-glycolides), known as PLG (see, e.g., U.S. Patent No. 4,767,628) and
polyethylene glycol, known as PEG (see, e.g., U.S. Patent No. 5,648,095).
Polymemyl memacrylate polymers are nondegradable while PLG particles biodegrade
- by random nonenzymatic hydrolysis of ester bonds to lactic and grycolic acids which
are excreted along normal metabolic pathways.
Such carriers present multiple copies of a selected macromolecule to the
immune system and promote trapping and retention of the molecules in local lymph
nodes. The particles can be phagocytosed by macrophages and can enhance antigen
presentation through cytokine release. International Publication No. WO 00/050006
describes the production of cationic microparticles with adsorbent surfaces. The use
of cationic microparticles as a delivery system for DNA vaccines has been shown to
dramatically improve potency (Singh et al., Proc. Natl. Acad Sci. USA (2000)
97:811-816). For example, microparticles have been shown to enhance both humoral
and T cell responses in a range of animal models when delivered in combination with
plasmids encoding HIV antigens (Singh et al., Proc. Natl. Acad. Sci. USA (2000)
97:811-816; Briones et al., Pharm. Res. (2001) 18:709-712; O'Hagan et al., J. Virol.
(2001)75:9037-9043).
A number of studies have been undertaken to determine the mechanism of
action for cationic PLG microparticles to induce enhanced responses to adsorbed
DNA. Preliminary studies have shown that PLG/DNA, but not plasmid DNA is able
to mediate transfection of dendritic cells in vitro (Denis-Mize et al, Gene Ther. (2000)
7:2105-2112). In addition, PLG/DNA protects DNA against degradation and
enhances gene expression in muscle and local lymph nodes (Singh et al., Proc. Natl.
Acad. Set USA (2000) 97:811-816; Briones et al., Pharm. Res. (2001) 18:709-712;
Denis-Mize et al, Gene Ther. (2000) 7:2105-2112).
Despite the use of such particle delivery systems, conventional vaccines often
fail to provide adequate protection against the targeted pathogen. Accordingly, there
is a continuing need for effective immunogenic compositions against HCV which
include safe and non-toxic delivery agents.
Summary of the Invention
The present invention is based in part, on the surprising discovery that the use
of HCV ElE2go9 DNA, adsorbed to cationic microparticles, produces significantly
higher antibody titers than those observed with E1E2 DNA alone. Cationic
microparticles strongly adsorb DNA, allow for high loading efficiency, protect against
degradation of the adsorbed DNA and enhance gene expression in muscle and local
lymph nodes. Furthermore, DNA delivered using microparticles, as opposed to DNA
delivered alone, is also able to recruit significant numbers of activated APC to the
injection site following immunization. Thus, the use of such combinations provides a
safe and effective approach for enhancing die immunogenicity of HCV E1E2
antigens.
Accordingly, in one embodiment, the invention is directed to a composition
consisting essentially of a pharmaceutically acceptable excipient and a polynucleotide
adsorbed to a cationic microparticle. The polynucleotide comprises a coding
sequence that encodes a hepatitis C virus (HCV) immunogen operably linked to
control elements that direct the transcription and translation of the coding sequence in
vivo. The HCV immunogen is an immunogenic HCV E1E2 complex with a
contiguous sequence of amino acids having at least 80% sequence identity to the
contiguous sequence of amino acids depicted at positions 192-809 of Figures 2A-2C,
with the proviso that the polynucleotide does not encode an HCV immunogen other
than the HCV E1E2 complex.
In certain embodiments, the HCV E1E2 complex consists of the sequence of
amino acids depicted at positions 192-809 of Figures 2A-2C.
In further embodiments, the cationic microparticle is formed from a polymer
selected from the group consisting of a poly(o-hydroxy acid), a polyhydroxy butyric
acid, a polycaprolactone, a polyorthoester, and a poryanhydride, such as a poly(a-
hydroxy acid) selected from the group consisting of pory(L-lactide), poty(D,L-lactide)
and poly(D,L-lactide-co-glycolide).
In additional embodiments, the invention is directed to a composition
consisting essentially of: (a) a pharmaceuticalfy acceptable excipient; and (b) a
polynucleotide adsorbed to a cationic microparticle formed from
poly(D,L-lactide-co-glycolide). The polynucleotide comprises a coding sequence that
encodes a hepatitis C virus (HCV) immunogen operabry linked to control elements
mat direct the transcription and translation of the coding sequence in vivo, and the
HCV immunogen is an HCV E1E2 complex consisting of the sequence of amino
acids depicted at positions 192-809 of Figures 2A-2C, with the proviso that the
polynucleotide does not encode an HCV immunogen other than the HCV E1E2
complex.
In yet further embodiments, the invention is directed to a method of
stimulating an immune response in a vertebrate subject which comprises
administering to the subject a therapeutically effective amount of a first composition
consisting essentially of a pharmaceutically acceptable excipient and a polynucleotide
adsorbed to a cationic microparticle. The polynucleotide comprises a coding
sequence that encodes a hepatitis C virus (HCV) immunogen operabry linked to
control elements mat direct the transcription and translation of the coding sequence in
vivo. The HCV immunogen is an immunogenic HCV E1E2 complex with a
contiguous sequence of amino acids having at least 80% sequence identity to the
contiguous sequence of amino acids depicted at positions 192-809 of Figures 2A-2C,
with the proviso mat the polynucleotide does not encode an HCV immunogen other
than the HCV E1E2 complex, wherein the HCV E1E2 complex is expressed in vivo to
elicit an immune response.
In certain embodiments, the HCV E1E2 complex consists of the sequence of
amino acids depicted at positions 192-809 of Figures 2A-2C.
In further embodiments, the cationic microparticle is formed from a polymer
selected from the group consisting of a pory(a-hydroxy acid), a polyhydroxy butyric
acid, a polycaprolactone, a polyorthoester, and a polyanhydride, such as a pory(a-
hydroxy acid) selected from me group consisting of pory(L-lactide), poh/(D,L-lactide)
and poly(D,L-lactide-co-grycolide).
In additional embodiments, the method further comprises administering a
therapeutically effective amount of a second composition to the subject, wherein the
second composition comprises an immunogenic HCV polypeptide and a
pharmaceuticalry acceptable excipient
In certain embodiments the second composition is administered subsequent to
the first composition. Additionally, the immunogenic HCV polypeptide in the second
composition can be an immunogenic HCV B1E2 complex with a contiguous sequence
of amino acids having at least 80% sequence identity to the contiguous sequence of
amino acids depicted at positions 192-809 of Figures 2A-2C. In an additional
embodiment, the HCV E1E2 complex consists of the sequence of amino acids
depicted at positions 192-809 of Figures 2A-2C.
In a further embodiment, the second composition further comprises an
adjuvant, such as a submicron oil-in-water emulsion capable of enhancing the
immune response to the immunogenic HCV polypeptide. The submicron oil-in-water
emulsion comprises (i) a metabolizable oil, wherein the oil is present in an amount of
1% to 12% of the total volume, and (ii) an emulsifying agent, wherein the emulsifying
agent is present in an amount of 0.01% to 1% by weight (w/v) and comprises
polyoxyethylene sorbitan mono-, di-, or triester and/or a sorbitan mono-, di-, or
triester, wherein the oil and the emulsifying agent are present in the form of an
oil-in-water emulsion having oil droplets substantially all of which are about 100 run
to less than 1 micron in diameter.
In certain embodiments, the submicron oil-in-water emulsion comprises 4-5%
w/v squalene, 0.25-1.0% w/v polyoxyelthylenesorbitan monooleate, and/or 0.25-1.0%
sorbitan trioleate, and optionally,
N-acetylmimimyl-L-alanyl-D-isoghwti^
-3-huydroxyphosphoiyloxy)-emylamuje (MTP-PE).
In additional embodiments, the submicron oil-in-water emulsion consists
essentially of about 5% by volume of squalene; and one or more emulsifying agents
selected from the group consisting of poryoxyelthylenesorbitan monooleate and
sorbitan trioleate, wherein me total amount of emulsifying agent(s) present is about
1% by weight (w/v).
In farmer embodiments, the one or more emulsifying agents are
polyoxyelthylenesorbitan monooleate and sorbitan trioleate and the total amount of
polyoxyelthylenesorbitan monooleate and sorbitan trioleate present is about 1 % by
weight (w/v).
In yet additional embodiments, me second composition further comprises a
CpG oligonucleotide.
In another embodiment, the invention is directed to a method of stimulating an
immune response in a vertebrate subject which comprises:
(a) administering to the subject a therapeutically effective amount of a first
composition consisting essentially of a polynucleotide adsorbed to a cationic
microparticle formed from poly(D,L4actide-co-grycolide), wherein the
polynucleotide comprises a coding sequence that encodes a hepatitis C virus (HCV)
immunogen operabry linked to control elements that direct the transcription and
translation of the coding sequence in vivo, and further wherein the HCV immunogen
is an HCV E1E2 complex consisting of the sequence of amino acids depicted at
positions 192-809 of Figures 2A-2C, with the proviso that me polynucleotide does not
encode an HCV immunogen other than the HCV E1E2 complex, and wherein the
HCV E1E2 complex is expressed in vivo; and
(b) administering a therapeutically effective amount of a second composition
to the subject, wherein the second composition comprises (i) an immunogenic HCV
E1E2 complex consisting of the sequence of amino acids depicted at positions
192-809 of Figures 2A-2C, (ii) an adjuvant, and (iii) a pharmaceutically acceptable
excipient, to elicit an immune response in the subject.
In certain embodiments, me adjuvant is a submicron oil-in-water emulsion
capable of enhancing me immune response to the immunogenic HCV E1E2 complex
in the second composition. Hie submicron oil-in-water emulsion comprises (i) a
metabolizable oil, wherein the oil is present in an amount of 1% to 12% of the total
volume, and (ii) an emulsifying agent, wherein the emulsifying agent is present in an
amount of 0.01% to 1% by weight (w/v) and comprises poh/oxyethylene sorbitan
mono-, di-, or triester and/or a sorbitan mono-, di-, or triester, wherein the oil and the
emulsifying agent are present in the form of an oil-in-water emulsion having oil
droplets substantially all of which are about 100 nm to less than 1 micron in diameter.
In additional embodiments, the submicron oil-in-water emulsion comprises
4-5% w/v squalene, 0.25-1.0% w/v poryoxyelthylenesorbitan monooleate, and/or
0.2S-1.0% sorbitan trioleate, and optionally,
N-acetylmuramyl-I^alairyl-D-isoghialmm^
-3-huydroxyphosphoiytoxy)-eutylamine (MTP-PE).
In further embodiments, the submicron oil-in-water emulsion consists
essentially of about 5% by volume of squalene; and one or more, emulsifying agents
selected from the group consisting of poryoxyelthylenesorbitan monooleate and
sorbitan trioleate, wherein the total amount of emulsifying agents) present is about
1% by weight (w/v).
In additional embodiments, the one or more emulsifying agents are
polyoxyelthy lenesorbitan monooleate and sorbitan trioleate and the total amount of
polyoxyelthylenesorbitan monooleate and sorbitan trioleate present is about 1% by
weight (w/v).
hi certain embodiments, the second composition further comprises a CpG
oligonucleotide.
In yet a further embodiment, the invention is directed to a method of making a
composition comprising combining a pharmaceutically acceptable excipient with a
polynucleotide adsorbed to a cationic microparticle. The polynucleotide comprises a
coding sequence that encodes a hepatitis C virus (HCV) immunogen operably linked
to control elements that direct the transcription and translation of the coding sequence
in vivo. The HCV immunogen is an immunogenic HCV E1E2 complex with a
contiguous sequence of amino acids having at least 80% sequence identity to the
contiguous sequence of amino acids depicted at positions 192-809 of Figures 2A-2C,
with the proviso mat said polynucleotide does not encode an HCV immunogen other
than the HCV B1E2 complex.
These and other embodiments of the subject invention will readily occur to
those of skill in the art in view of the disclosure herein.
Brief Description of the Figures
Figure 1 is a diagrammatic representation of the HCV genome, depicting the
various regions of the HCV polyprotein.
Figures 2A-2C (SBQ ED NOS:l and 2) show the nucleotide and corresponding
amino acid sequence for the HCV-1 El/E2/p7 region. The numbers shown in the
figure are relative to the full-length HCV-1 polyprotein. The El, E2 and p7 regions
are shown.
Figure 3 shows serum IgG titers following immunisation of mice at 0 and 4
weeks with ElE28o»plasmid DNA alone or PLG/CTAB/ElE2go9DNA (indicated as
PLG/DNA in the figures) at lOug and lOOug (N=10, +/- SEM).
Figure 4 shows serum IgG titers following immunization of mice at 0 and 4
weeks with ElE28o9plasmid DNA at lOjig, PLG/CTAB/E1E2jo9DNA at l^ig and
lOug, or El B2 ElE2go? recombinant protein in MF59 adjuvant at 2 pig (N =10, +/-
SEM).
Figure 5 shows serum IgG titers following immunization of mice at 0,4 and 8
weeks with E1E2809plasmid DNA or PLG/CTAB/ ElE2go9DNA at lOfig, or ElE2go9
recombinant protein in MF59 adjuvant at 5jjg. In addition, 2 groups of mice were
immunized twice with E1E2809 plasmid DNA or PLG/CTAB/ E1E2809DNA 10 pig at 0
and 4 weeks, and boosted with 5 ug E1E2809 recombinant protein in MF59 at 8 weeks
(N =10, +/- SEM). D = E1E2809 DNA 10 ng; P = 5 ug ElE2g09protein in MF59.
Detailed Description of the Invention
The practice of the present invention will employ, unless otherwise indicated,
conventional methods of chemistry, biochemistry, recombinant DNA techniques and
immunology, within the skill of the art Such techniques are explained fully in the
literature. See, e.g., Fundamental Virology, 2nd Edition, vol. I & II (B.N. Fields and
D.M. Knipe, eds.); Handbook of 'Experimental Immunology, Vols. I-IV (D.M. Weir
and C.C. Blackwell eds., Blackwell Scientific Publications); T.E. Creighton, Proteins:
Structures and Molecular Properties (W.H. Freeman and Company, 1993); A.L.
Lehninger, Biochemistry (Worth Publishers, Inc., current addition); Sambrook, et al.,
Molecular Cloning: A Laboratory Manual (2nd Edition, 1989); Methods In
Enzymology (S. Colowick and N. Kaplan eds., Academic Press, Inc.).
The following amino acid abbreviations are used throughout the text:
Alanine: Ala (A) Arginine: Arg (R)
Asparagine: Asn (N) Aspartic acid: Asp (D)
Cysteine: Cys (C) Glutamine: Gin (Q)
Glutamic acid: Glu (E) Glycine: Gly Histidine: His (H) Isoleucine: lie (I)
Leucine: Leu (L) Lysine: Lys (K)
Methionine: Met (M) Phenylalanine: Phe (F)
Proline: Pro (P) Serine: Ser (S)
Threonine: Thr (T) Tryptophan: Tip (W)
Tyrosine: Tyr (Y) Valine: Val (V)
1. Definitions
In describing the present invention, the following terms will be employed, and
are intended to be defined as indicated below.
It must be noted that, as used in mis specification and the appended claims, the
singular forms "a", "an" and "the" include plural referents unless the content clearly
dictates otherwise. Thus, for example, reference to "an E1E2 polypeptide" includes a
mixture of two or more such polypeptides, and the like.
The terms "polypeptide" and "protein" refer to a polymer of amino acid
residues and are not limited to a minimum length of the product Thus, peptides,
oligopeptides, dimers, multimers, and the like, are included within the definition.
Bom full-length proteins and fragments thereof are encompassed by the definition.
The terms also include postexpression modifications of the polypeptide, for example,
glycosylation, acerylation, phosphorylation and the like. Furthermore, for purposes of
the present invention, a "polypeptide" refers to a protein which includes
modifications, such as deletions, additions and substitutions (generally conservative in
nature), to the native sequence, so long as the protein maintains the desired activity.
These modifications may be deliberate, as through site-directed mutagenesis, or may
be accidental, such as through mutations of hosts which produce the proteins or errors
due to PCR amplification.
By an "El polypeptide" is meant a molecule derived from an HCV El region.
The mature El region of HCV-1 begins at approximately amino acid 192 of the
polyprotein and continues to approximately amino acid 383, numbered relative to the
full-length HCV-1 polyprotein. (See, Figures 1 and 2A-2C. Amino acids 192-383 of
Figures 2A-2C correspond to amino acid positions 20-211 of SEQ ID NO:2.) Amino
acids at around 173 through approximately 191 (amino acids 1-19 of SEQ ID NO:2)
serve as a signal sequence for El. Thus, by an "El polypeptide" is meant either a
precursor El protein, including me signal sequence, or a mature El polypeptide which
lacks mis sequence, or even an El polypeptide with a heterologous signal sequence.
The El polypeptide includes a C-tenninal membrane anchor sequence which occurs
at approximately amino acid positions 360-383 (see, International Publication No.
WO 96/04301, published February IS, 1996). An El polypeptide, as defined herein,
may or may not include the C-terminal anchor sequence or portions thereof.
By an "E2 polypeptide" is meant a molecule derived from an HCV.E2 region.
The mature E2 region of HCV-1 begins at approximately amino acid 383-385,
numbered relative to the full-length HCV-1 polyprotein. (See, Figures 1 and 2A-2C.
Amino acids 383-385 of Figures 2A-2C correspond to amino acid positions 211-213
of SEQ ID NO:2.) A signal peptide begins at approximately amino acid 364 of the
polyprotein. Thus, by an "E2 polypeptide" is meant either a precursor E2 protein,
including the signal sequence, or a mature E2 polypeptide which lacks this sequence,
or even an E2 polypeptide with a heterologous signal sequence. The E2 polypeptide
includes a C-terminal membrane anchor sequence which occurs at approximately
amino acid positions 715-730 and may extend as far as approximately amino acid
residue 746 (see, Lin et al., J. Virol. (1994) 68:5063-5073). An E2 polypeptide, as
defined herein, may or may not include the C-terminal anchor sequence or portions
thereof. Moreover, an E2 polypeptide may also include all or a portion of the p7
region which occurs immediately adjacent to the C-terminus of E2. As shown in
Figures 1 and 2A-2C, the p7 region is found at positions 747-809, numbered relative
to the full-length HCV-1 polyprotein (amino acid positions 575-637 of SEQ ID
N0:2). Additionally, it is known feat multiple species of HCV E2 exist (Spaete et al.,
Virol. (1992) 188:819-830; Selbv et al.. J. Virol (1996)70:5177-5182; Grakoui et al.,
J. Virol. (1993) 62:1385-1395; Tomei et al.,./ Virol. (1993)67:4017-4026).
Accordingly, for purposes of the present invention, the term "E2" encompasses any of
these species of E2 including, without limitation, species that have deletions of 1-20
or more of me amino acids from the N-terminus of the E2, such as, e.g, deletions of 1,
2, 3,4,5....10...15,16,17,18,19... etc. amino acids. Such E2 species include those
beginning at amino acid 387, amino acid 402, amino acid 403, etc.
Representative El and B2 regions from HCV-1 are shown in Figures 2A-2C
and SEQ ID NO:2. For purposes of the present invention, the El and E2 regions are
defined with respect to the amino acid number of the poryprotein encoded by the
genome of HCV-1, with the initiator methionine being designated position 1. See,
e.g., Choo et al., Proc. Natl. Acad. Sci. USA (1991) 88=2451-2455. However, it
should be noted mat the term an "El polypeptide11 or an "E2 polypeptide" as used
herein is not limited to the HCV-1 sequence. In mis regard, the corresponding El or
E2 regions in other HCV isolates can be readily determined by aligning sequences
from the isolates in a manner that brings the sequences into maximum alignment
This can be performed with any of a number of computer software packages, such as
ALIGN 1.0, available from the University of Virginia, Department of Biochemistry
(Attn: Dr. William R. Pearson). See, Pearson et al., Proc. Natl. Acad. Sci. USA
(1988)85:2444-2448.
Furthermore, an "El polypeptide" or an "E2 polypeptide" as defined herein is
not limited to a polypeptide having the exact sequence depicted in the Figures.
Indeed, the HCV genome is in a state of constant flux in vivo and contains several
variable domains which exhibit relatively high degrees of variability between isolates.
A number of conserved and variable regions are known between these strains and, in
general, the amino acid sequences of epitopes derived from these regions will have a
high degree of sequence homology, e.g., amino acid sequence homology of more than
30%, preferably more man 40%, more than 60%, and even more man 80-90%
homology, when the two sequences are aligned. It is readily apparent that the terms
encompass El and E2 polypeptides from any of the various HCV strains and isolates
including isolates having any of flic 6 genotypes of HCV described in Simmonds et
al., J. Gen. Virol. (1993) 74:2391-2399 (e.g., strains 1,2,3,4 etc.), as well as newly
identified isolates, and subtypes of these isolates, such as HCVla, HCVlb etc.
Thus, for example, the term "El" or "E2" polypeptide refers to native El or E2
sequences from any of the various HCV strains, as well as analogs, muteins and
immunogenic fragments, as defined further below. The complete genotypes of many
of these strains are known. See, e.g., U.S. Patent No. 6,150,087 and GenBank
Accession Nos. AJ238800 and AJ238799.
Additionally, the terms "El polypeptide" and "E2 polypeptide" encompass
proteins which include modifications to the native sequence, such as internal
deletions, additions and substitutions (generally conservative in nature), such as
proteins substantially homologous to the parent sequence. These modifications may
be deliberate, as through site-directed mutagenesis, or may be accidental, such as
through naturally occurring mutational events. All of these modifications are
encompassed in the present invention so long as the modified El and E2 polypeptides
function for their intended purpose. Thus, for example, if the El and/or E2
polypeptides are to be used in vaccine compositions, the modifications must be such
that immunological activity (i.e., the ability to elicit a humoral or cellular immune
response to the polypeptide) is not lost
By "E1E2" complex is meant a protein containing at least one El polypeptide
and at least one E2 polypeptide, as described above. Such a complex may also
include all or a portion of the p7 region which occurs immediately adjacent to the
C-terminus of E2. As shown in Figures 1 and 2A-2C, the p7 region is found at
positions 747-809, numbered relative to the full-length HCV-1 polyprotein (amino
acid positions 575-637 of SEQ ID NO:2). A representative E1E2 complex which
includes the ;p7 protein is termed "ElE2goa" herein.
The mode of association of El and E2 in an E1E2 complex is immaterial. The
El and E2 polypeptides may be associated through non-covalent interactions such as
through electrostatic forces, or by covalent bonds. For example, the E1E2
polypeptides of the present invention may be in the form of a fusion protein which
includes an immunogenic El polypeptide and an immunogenic E2 polypeptide, as
defined above. The fusion may be expressed from a polynucleotide encoding an
E1E2 chimera. Alternatively, E1E2 complexes may form spontaneously simply by
mixing El and E2 proteins which have been produced individually. Similarly, when
co-expressed and secreted into media, me El and E2 proteins can form a complex
spontaneously. Thus, the term encompasses E1E2 complexes (also called aggregates)
that spontaneously form upon purification of El and/or E2. Such aggregates may
include one or more El monomers in association wife one or more E2 monomers.
The number of El and E2 monomers present seed not be equal so long as at least one
El monomer and one E2 monomer are present Detection of the presence of an E1E2
complex is readily determined using standard protein detection techniques such as
polyacrylamide gel electrophoresis and immunological techniques such as
rmmunoprecipitation.
The terms "analog" and "mutein" refer to biologically active derivatives of the
reference molecule, such as ElE2so9, or fragments of such derivatives, that retain
desired activity, such as immunoreactivity in assays described herein. In general, the
term "analog" refers to compounds having a native polypeptide sequence and
structure with one or more amino acid additions, substitutions (generally conservative
in nature) and/or deletions, relative to the native molecule, so long as the
modifications do not destroy immunogenic activity. The term "mutein" refers to
peptides having one or more peptide mimics ("peptoids"), such as those described in
International Publication No. WO 91/04282. Preferably, the analog or mutein has at
least the same immunoreactivity as the native molecule. Methods for making
polypeptide analogs and muteins are known in the art and are described further below.
Particularly preferred analogs include substitutions that are conservative in
nature, i.e., those substitutions that take place within a family of amino acids that are
related in their side chains. Specifically, amino acids are generally divided into four
families: (1) acidic — aspartate and glutamate; (2) basic -- lysine, arginine, histidine;
(3) non-polar — alanine, valine, leucine, isoleucine, proline, phenylalanine,
methionine, tryptophan; and (4) uncharged polar — glycine, asparagine, glutamine,
cysteine, serine threonine, tyrosine. Phenylalanine, tryptophan, and tyrosine are
sometimes classified as aromatic amino acids. For example, it is reasonably
predictable that an isolated replacement of leucine with isoleucine or valine, an
aspartate with a glutamate, a threonine with a serine, or a similar conservative
replacement of an amino acid with a structurally related amino acid, will not have a
major effect on the biological activity. For example, the polypeptide of interest, such
as an E1E2 polypeptide, may include up to about 5-10 conservative or
non-conservative amino acid substitutions, or even up to about 15-25 or 50
conservative or non-conservative amino acid substitutions, or any integer between
5-50, so long as the desired function of the molecule remains intact One of skill in
the art can readily determine regions of the molecule of interest mat can tolerate
change by reference to Hopp/Woods and Kyto-Doolittle plots, well known in the art
By "fragment" is intended a polypeptide consisting of only a part of the intact
full-length polypeptide sequence and structure. The fragment can include a
C-terminal deletion an N-terminal deletion, and/or an internal deletion of the native
polypeptide. An "immunogenic fragment" of a particular HC V protein will generally
include at least about 5-10 contiguous amino acid residues of the full-length molecule,
preferably at least about 15-25 contiguous amino acid residues of the full-length
molecule, and most preferably at least about 20-50 or more contiguous amino acid
residues of the full-length molecule, that define an epitope, or any integer between 5
amino acids and the full-length sequence, provided that the fragment in question
retains the ability to elicit an immunological response as defined herein. For a
description of known immunogenic fragments of HCV El and E2, see, e.g., Chien et
al, International Publication No. WO 93/00365.
The term "epitope" as used herein refers to a sequence of at least about 3 to 5,
preferably about 5 to 10 or 15, and not more than about 500 amino acids (or any
integer therebetween), which define a sequence that by itself or as part of a larger
sequence, elicits an immunological response in the subject to which it is administered.
Often, an epitope will bind to an antibody generated in response to such sequence.
There is no critical upper limit to the length of the fragment, which may comprise
nearly the full-length of the protein sequence, or even a fusion protein comprising two
or more epitopes from the HCV polyprotein. An epitope for use in the subject
invention is not limited to a polypeptide having the exact sequence of the portion of
the parent protein from which it is derived. Indeed, viral genomes are in a state of
constant flux and contain several variable domains which exhibit relatively high
degrees of variability between isolates. Thus the term "epitope" encompasses
sequences identical to the native sequence, as well as modifications to the native
sequence, such as deletions, additions and substitutions (generally conservative in
nature).
Regions of a given polypeptide mat include an epitope can be identified using
any number of epitope mapping techniques, well known in the art. See, e.g., Epitope
Mapping Protocols in Methods in Molecular Biology, Vol. 66 (Glenn E. Morris, Ed.,
1996) Humana Press, Totowa, New Jersey. For example, linear epitopes may be
determined by e.g., concurrently synthesizing large numbers of peptides on solid
supports, the peptides corresponding to portions of the protein molecule, and reacting
the peptides with antibodies while the peptides are still attached to me supports. Such
techniques are known in the art and described in, e.g., U.S. Patent No. 4,708,871;
Geysenetal. (1984) Proc. Natl Acad. Set USA 8J.:3998-4002; Geysen et al.
(1985)Proc. Natl. Acad. Sci USA 82:178-182; Geysenetal (1986)M?/ec.
Immunol. 23:709-715. Using such techniques, a number of epitopes of HCV have
been identified. See, e.g., Chien et al., Viral Hepatitis and Liver Disease (1994) pp.
320-324, and further below. Similarly, conformational epitopes are readily identified
by determining spatial conformation of amino acids such as by, e.g., x-ray
crystallography and 2-dimensional nuclear magnetic resonance. See, e.g., Epitope
Mapping Protocols, supra. Antigenic regions of proteins can also be identified using
standard antigenicity and hydropathy plots, such as those calculated using, e.g., the
Omiga version 1.0 software program available from the Oxford Molecular Group.
This computer program employs the Hopp/Woods method, Hopp et al., Proc. Natl.
Acad. Sci USA (1981) 78:3824-3828 for determining antigenicity profiles, and the
Kyte-Doolittle technique, Kyte et al., J. Mol. Biol. (1982) 157:105-132 for hydropathy
plots.
As used herein, the term "conformational epitope" refers to a portion of a
full-length protein, or an analog or mutein thereof, having structural features native to
the amino acid sequence encoding the epitope within the full-length natural protein.
Native structural features include, but are not limited to, glycosylation and three
dimensional structure. The length of the epitope defining sequence can be subject to
wide variations as these epitopes are believed to be formed by the three-dimensional
shape of the antigen (e.g., folding). Thus, amino acids defining the epitope can be
relatively few in number, but widely dispersed along the length of the molecule (or
even on different molecules in the case of dimers, etc.), being brought into correct
epitope conformation via folding. The portions of the antigen between the residues
defining the epitope may not be critical to the conformational structure of the epitope.
For example, deletion or substitution of these intervening sequences may not affect
the conformational epitope provided sequences critical to epitope conformation are
maintained (e.g., cysteines involved in disulfide bonding, glycosylation sites, etc.).
Conformational epitopes are readily identified using methods discussed above.
Moreover, the presence or absence of a conformational epitope in a given polypeptide
can be readily determined through screening the antigen of interest with an antibody
(polyclonal serum or monoclonal to the conformational epitope) and comparing its
reactivity to that of a denatured version of the antigen which retains only linear
epitopes (if any). In such screening using polyclonal antibodies, it may be
advantageous to absorb the polyclonal serum first with the denatured antigen and see
if it retains antibodies to the antigen of interest Conformational epitopes derived
from the El and E2 regions are described in, e.g., International Publication No. WO
94/01778.
An "immunological response" to an HCV antigen or composition is the
development in a subject of a humoral and/or a cellular immune response to
molecules present in the composition of interest For purposes of the present
invention, a "humoral immune response" refers to an immune response mediated by
antibody molecules, while a "cellular immune response" is one mediated by
T-lymphocytes and/or other white blood cells. One important aspect of cellular
immunity involves an antigen-specific response by cytolytic T-cells ("CTLs"). CTLs
have specificity for peptide antigens that are presented in association with proteins
encoded by the major histocompatibility complex (MHC) and expressed on the
surfaces of cells. CTLs help induce and promote the intracellular destruction of
intracellular microbes, or the lysis of cells infected with such microbes. Another
aspect of cellular immunity involves an antigen-specific response by helper T-cells.
Helper T-cells act to help stimulate the function, and focus the activity of, nonspecific
effector cells against cells displaying peptide antigens in association with MHC
molecules on their surface. A "cellular immune response" also refers to the
production of cytokines, chemokines and other such molecules produced by activated
T-cells and/or other white blood cells, including those derived from CD4+ and CD8+
T-cells. A composition or vaccine that elicits a cellular immune response may serve
to sensitize a vertebrate subject by the presentation of antigen in association with
MHC molecules at the cell surface. The cell-mediated immune response is directed
at, or near, cells presenting antigen at their surface. la addition, antigen-specific
T-lymphocytes can be generated to allow for the future protection of an immunized
host The ability of a particular antigen to stimulate a cell-mediated immunological
response may be determined by a number of assays, such as by rymphoproliferation
(lymphocyte activation) assays, CTL cytotoxic cell assays, or by assaying for
T-lymphocytes specific for the antigen in a sensitized subject Such assays are well
known in the art. See, e.g., Erickson et al., J. Immunol (1993) 151:4189-4199; Doe et
al., Eur. J. Immunol (1994)24:2369-2376.
Thus, an immunological response as used herein may be one which stimulates
the production of CTLs, and/or the production or activation of helper T- cells. The
antigen of interest may also elicit an antibody-mediated immune response, including,
or example, neutralization of binding (NOB) antibodies. The presence of an NOB
antibody response is readily determined by the techniques described in, e.g., Rosa et
al., Proc. Nail Acad. Sci. USA (1996) 93:1759. Hence, an immunological response
may include one or more of the following effects: the production of antibodies by
B-cells; and/or the activation of suppressor T-cells and/or y&T-cells directed
specifically to an antigen or antigens present in the composition or vaccine of interest.
These responses may serve to neutralize infectivity, and/or mediate
antibody-complement, or antibody dependent cell cytotoxicity (ADCC) to provide
protection or alleviation of symptoms to an immunized host. Such responses can be
determined using standard immunoassays and neutralization assays, well known in
the art
A component of an HCV E1E2 DNA composition, such as a cationic
microparticle, enhances the immune response to the HCV E1E2 polypeptide produced
by the DNA in the composition when me composition possesses a greater capacity to
elicit an immune response man the immune response elicited by an equivalent amount
of the El E2 DNA delivered without the cationic microparticle. Such enhanced
immunogenicity can be determined by administering me E1E2 DNA with and without
the additional components, and comparing antibody titers or cellular immune
response produced by the two using standard assays such as radioimmunoassay,
ELISAs, lymphoproliferation assays, and the like, well known in the art.
By "isolated" is meant, when referring to a polypeptide, that the indicated
molecule is separate and discrete from the whole organism with which me molecule is
found in nature or is present in the substantial absence of other biological
macro-molecules of the same type. The term "isolated" with respect to a
polynucleotide is a nucleic acid molecule devoid, in whole or part, of sequences
normally associated with it in nature; or a sequence, as it exists in nature, but having
heterologous sequences in association therewith; or a molecule disassociated from die
chromosome.
By "equivalent antigenic determinant" is meant an antigenic determinant from
different sub-species or strains of HCV, such as from strains 1,2,3, etc., of HCV
which antigenic determinants are not necessarily identical due to sequence variation,
but which occur in equivalent positions in the HCV sequence in question. In general
the amino acid sequences of equivalent antigenic determinants will have a high degree
of sequence homology, e.g., amino acid sequence homology of more than 30%,
usually more than 40%, such as more than 60%, and even more than 80-90%
homology, when the two sequences are aligned.
"Homology" refers to flie percent identity between two polynucleotide or two
polypeptide moieties. Two DNA, or two polypeptide sequences are "substantially
homologous" to each odier when the sequences exhibit at least about 50% , preferably
at least about 75%, more preferably at least about 80%-85%, preferably at least about
90%, and most preferably at least about 95%-98% sequence identity over a defined
length of the molecules. As used herein, substantially homologous also refers to
sequences showing complete identity to the specified DNA or polypeptide sequence.
In general, "identity" refers to an exact nucleotide-to-nucleotide or amino
acid-to-amino acid correspondence of two polynucleotides or polypeptide sequences,
respectively. Percent identity can be determined by a direct comparison of the
sequence information between two molecules by aligning the sequences, counting the
exact number of matches between the two aligned sequences, dividing by the length
of the shorter sequence, and multiplying the result by 100. Readily available
computer programs can be used to aid in me analysis, such as ALIGN, Dayhoff, M.O.
in Atlas of Protein Sapience and Structure M.O. Dayhoff ed., 5 Suppl. 3:353-358,
National biomedical Research Foundation, Washington, DC, which adapts the local
homology algorithm of Smith and Waterman Advances in Appl. Math. 2:482-489,
1981 for peptide analysis. Programs for determining nucleotide sequence identity are
available in me Wisconsin Sequence Analysis Package, Version 8 (available from
Genetics Computer Group, Madison, WI) for example, the BBSTFTT, FASTA and
GAP programs, which also rely on the Smith and Waterman algorithm. These
programs arcs readily utilized with the default parameters recommended by the
manufacturer and described in the Wisconsin Sequence Analysis Package referred to
above. For example, percent identity of a particular nucleotide'sequence to a
reference sequence can be determined using the homology algorithm of Smith and
Waterman with a default scoring table and a gap penalty of six nucleotide positions.
Another method of establishing percent identity in the context of the present
invention is to use the MPSRCH package of programs copyrighted by the University
of Edinburgh, developed by John F. Collins and Shane S. Sturrok, and distributed by
IntelliGenetics, Inc. (Mountain View, CA). From this suite of packages the
Smith-Waterman algorithm can be employed where default parameters are used for
the scoring table (for example, gap open penalty of 12, gap extension penalty of one,
and a gap of six). From the data generated the "Match" value reflects "sequence
identity." Other suitable programs for calculating the percent identity or similarity
between sequences are generally known in the art, for example, another alignment
program is BLAST, used with default parameters. For example, BLASTN and
BLASTP can be used using the following default parameters: genetic code = standard;
filter = none; strand = both; cutoff = 60; expect =10; Matrix = BLOSUM62;
Descriptions = 50 sequences; sort by = HIGH SCORE; Databases = non-redundant,
GenBank + EMBL + DDB J + PDB + GenBank CDS translations + Swiss protein +
Spupdate + PEEL Details of these programs can be found at the following internet
address: http://www.ncbi.nlm.gov/cgi-bin/BLAST.
Alternatively, homology can be determined by hybridization of
polynucleotides under conditions which form stable duplexes between homologous
regions, followed by digestion with single-stranded-specific nucleases), and size
determination of the digested fragments. DNA sequences that are substantially
homologous can be identified in a Southern hybridization experiment under, for
example, stringent conditions, as defined for mat particular system. Defining
appropriate hybridization conditions is within me skill of me art See, e.g., Sambrook
et al., supra; DNA Cloning, supra; Nucleic Acid Hybridization, supra.
By the term "degenerate variant" is intended a polynucleotide containing
changes in the nucleic acid sequence thereof, mat encodes a polypeptide having me
same amino acid sequence as the polypeptide encoded by the polynucleotide from
which the degenerate variant is derived. Thus, a degenerate variant of ElE2go9 DNA
is a molecule with one or more base differences in the DNA sequence from which the
molecule is derived but that encodes the same ElE2go9 amino acid sequence.
A "coding sequence" or a sequence which "encodes" a selected polypeptide, is
a nucleic acid molecule which is transcribed (in the case of DNA) and translated (in
the case of mRNA) into a polypeptide in vitro or in vivo when placed under the
control of appropriate regulatory sequences. The boundaries of the coding sequence
are determined by a start codon at the 5' (amino) terminus and a translation stop codon
at the 3' (carboxy) terminus. A transcription termination sequence may be located 31
to the coding sequence.
A "nucleic acid" molecule or "polynucleotide" can include both double- and
single-stranded sequences and refers to, but is not limited to, cDNA from viral,
procaryotic or eucaryotic mRNA, genomic DNA sequences from viral (e.g. DNA
viruses and retroviruses) or procaryotic DNA, and synthetic DNA sequences. The
term also captures sequences that include any of the known base analogs of DNA and
RNA.
An "HCV polynucleotide11 is a polynucleotide that encodes an HCV
polypeptide, as defined above.
"Operably linked" refers to an arrangement of elements wherein the
components so described are configured so as to perform their desired function.
Thus, a given promoter operably linked to a coding sequence is capable of effecting
the expression of the coding sequence when the proper transcription factors, etc., are
present The promoter need not be contiguous with the coding sequence, so long as it
functions to direct the expression thereof. Thus, for example, intervening untranslated
yet transcribed sequences can be present between the promoter sequence and the
coding sequence, as can transcribed introns, and the promoter sequence can still be
considered "operably linked" to the coding sequence.
"Recombinant1' as used herein to describe a nucleic acid molecule means a
polynucleotide of genomic, cDNA, viral, semisynthetic, or synthetic origin which, by
virtue of its origin or manipulation is not associated with all or a portion of the
polynucleotide with which it is associated in nature. The term "recombinant" as used
with respect to a protein or polypeptide means a polypeptide produced by expression
of a recombinant polynucleotide. In general, the gene of interest is cloned and then
expressed in transformed organisms, as described further below. The host organism
expresses the foreign gene to produce the protein under expression conditions.
A "control element" refers to a polynucleotide sequence which aids in the
expression of a coding sequence to which it is linked. The term includes promoters,
transcription termination sequences, upstream regulatory domains, polyadenylation
signals, untranslated regions, including 5'-UTRs and 3'-UTRs and when appropriate,
leader sequences and enhancers, which collectively provide for the transcription and
translation of a coding sequence in a host cell.
A "promoter" as used herein is a DNA regulatory region capable of binding
RNA polymerase in a host cell and initiating transcription of a downstream (3'
direction) coding sequence operably linked thereto. For purposes of the present
invention, a promoter sequence includes the minimum number of bases or elements
necessary to initiate transcription of a gene of interest at levels detectable above
background. Within the promoter sequence is a transcription initiation site, as well as
protein binding domains (consensus sequences) responsible for the binding of KNA
polymerase. Bucaryotic promoters will often, but not always, contain "TATA" boxes
and "CAT" boxes.
A control sequence "directs the transcription" of a coding sequence in a cell
when RNA polymerase will bind the promoter sequence and transcribe me coding
sequence into mRNA, which is men translated into the polypeptide encoded by the
coding sequence.
"Expression cassette" or "expression construct" refers to an assembly which is
capable of directing the expression of the sequences) or gene(s) of interest The
expression cassette includes control elements, as described above, such as a promoter
which is operably linked to (so as to direct transcription of) the sequence(s) or gene(s)
of interest, and often includes a polyadenylation sequence as well. Within certain
embodiments of the invention, die expression cassette described herein may be
contained within a plasmid construct In addition to the components of the expression
cassette, the plasmid construct may also include, one or more selectable markers, a
signal which allows the plasmid construct to exist as single-stranded DNA (e.g., a
M13 origin of replication), at least one multiple cloning site, and a "mammalian"
origin of replication (e.g., a SV40 or adenovirus origin of replication).
"Transformation," as used herein, refers to the insertion of an exogenous
polynucleotide into a host cell, irrespective of the method used for insertion: for
example, transformation by direct uptake, transfection, infection, and the like. For
particular methods of transfection, see further below. The exogenous polynucleotide
may be maintained as a nonintegrated vector, for example, an episome, or
alternatively, may be integrated into the host genome.
By "nucleic acid immunization" is meant the introduction of a nucleic acid
molecule encoding one or more selected immunogens, such as E1E2, into a host cell,
for the in vivo expression of the immunogen. The nucleic acid molecule can be
introduced directly into a recipient subject, such as by injection, inhalation, oral,
intranasal and mucosal administration, or the like, or can be introduced ex vivo, into
cells which have been removed from the host In the latter case, the transformed cells
are reintroduced into the subject where an immune response can be mounted against
me immunogen encoded by the nucleic acid molecule.
The terns "effective amount" or "pharmaceutically effective amount" of an
immunogenic composition, as provided herein, refer to a nontoxic but sufficient
amount of the composition to provide the desired response, such as an immunological
response, and optionally, a corresponding therapeutic effect. The exact amount
required will vary from subject to subject, depending on the species, age, and general
condition of the subject, the severity of the condition being treated, and the particular
macromolecule of interest, mode of administration, and me like. An appropriate
"effective" amount in any individual case may be determined by one of ordinary skill
in the art using routine experimentation.
By "vertebrate subject" is meant any member of the subphylum chordata,
including, without limitation, humans and other primates, including non-human
primates such as chimpanzees and other apes and monkey species; farm animals such
as cattle, sheep, pigs, goats and horses; domestic mammals such as dogs and cats;
laboratory animals including rodents such as mice, rats and guinea pigs; birds,
including domestic, wild and game birds such as chickens, turkeys and other
gallinaceous birds, ducks, geese, and the like. The term does not denote a particular
age. Thus, both adult and newborn individuals axe intended to be covered. The
invention described herein is intended for use in any of the above vertebrate species,
since the immune systems of all of these vertebrates operate similarly.
The term "treatment" as used herein refers to either (1) the prevention of
infection or reinfection (prophylaxis), or (2) the reduction or elimination of symptoms
of the disease of interest (merapy).
2. Modes of Carrying Out the Invention
Before describing the present invention in detail, it is to be understood that this
invention is not limited to particular formulations or process parameters as such may,
of course, vary. It is also to be understood that me terminology used herein is for the
purpose of describing particular embodiments of the invention only, and is not
intended to be limiting.
Although a number of methods and materials similar or equivalent to those
described herein can be used in the practice of the present invention, the preferred
materials and methods are described herein.
Central to the present invention is the discovery that plasmid DNA encoding
HCV E1E2 envelope protein adsorbed onto cationic microparticles induces
significantly enhanced antibody responses as compared to the use of non-adsorbed
plasmid E1E2 DNA. Moreover, the adsorbed DNA induces detectable responses at a
dose an order of magnitude lower than the dose required to produce detectable
antibodies with the non-adsorbed DNA. Additionally, the antibody response induced
by the adsorbed DNA is comparable to the response achieved by administration of the
E1E2 protein while delivery of the non-adsorbed E1E2 DNA barely induces
detectable responses. E1E2 DNA adsorbed to cationic microparticles is more .
effective at priming for potent responses following booster immunizations with
recombinant protein than with the plasmid DNA atone. Moreover, the examples
below evidence the ability of adsorbed E1E2 DNA to produce a cellular immune
response.
Thus, as described in more detail below, subjects are initially administered
DNA encoding ElE2go9 complexes adsorbed to cationic microparticles. Subjects can
subsequently be boosted with DNA compositions comprising DNA encoding E1E2
complexes and/or protein compositions comprising E1E2 protein complexes. The
E1E2 complexes used for boosting can be either ElE2gog, or can be other E1E2
proteins, as described further below, so long as an immune response is generated.
Additionally, the compositions above can be used alone, or in combination with other
compositions, such as compositions comprising other HCV proteins, compositions
comprising DNA encoding other HCV proteins, as well as compositions comprising
ancillary substances. If used in combination with other compositions, such
compositions can be administered prior to, concurrent with, or subsequent to the E1E2
compositions.
In order to further an understanding of the invention, a more detailed
discussion is provided below regarding E1E2 DNA and protein compositions, cationic
microparticles, and additional compositions for use in the subject methods.
E1E2 Polypeptides and Polyudeotides
E1E2 complexes comprise El and E2 polypeptides, associated either through
non-covalent or covalent interactions. As explained above, the HCV El polypeptide
is a glycoprotein and extends from approximately amino acid 192 to amino acid 383
(numbered relative to the polyprotein of HCV-1). See, Choo et aL, Proc. Natl. Acad.
Sci. USA (1991) 88:2451-2455. Amino acids at around 173 through approximately
191 represent a signal sequence for El. An HCV E2 polypeptide is also a
glycoprotein and extends from approximately ammo acid 383 or 384 to amino acid
746. A signal peptide for E2 begins at approximately amino acid 364 of the
polyprotein. Thus, the term "full-length" El or "not truncated" El as used herein
refers to polypeptides that include, at least, amino acids 192-383 of an HCV
polyprotein (numbered relative to HCV-1). With respect to E2, the term "full-length"
or "not truncated" as used herein refers to polypeptides that include, at least, amino
acids 383 or 384 to amino acid 746 of an HCV polyprotein (numbered relative to
HCV-1). As will be evident from this disclosure, E2 polypeptides for use with the
present invention may include additional amino acids from the p7 region, such as
amino acids 747-809.
E2 exists as multiple species (Spaete et al., Virol. (1992) 188:819-830; Selby
etal.,7. Virol. (1996) 70:5177-5182; Grakoui et al., J. Virol. (1993)67:1385-1395;
Tomei et al., J. Virol. (1993) 67:4017-4026) and clipping and proteolysis may occur
at the N- and C-termini of the El and E2 polypeptides. Thus, an E2 polypeptide for
use herein may comprise at least amino acids 405-661, e.g., 400, 401, 402... to 661,
such as 383 or 384-661, 383 or 384-715, 383 or 384-746, 383 or 384-749 or 383 or
384-809, or 383 or 384 to any C-terminus between 661-809, of an HCV polyprotein,
numbered relative to the full-length HCV-1 poryprotein. Similarly, preferable El
polypeptides for use herein can comprise amino acids 192-326,192-330,192-333,
192-360,192-363,192-383, or 192 to any C-tenninus between 326-383, of an HCV
polyprotein.
The E1E2 complexes may also be made up of immunogenic fragments of El
and E2 which comprise epitopes. For example, fragments of El polypeptides can
comprise from about 5 to nearly me full-length of the molecule, such as 6,10,25, SO,
75,100,125,150,175,185 or more amino acids of an El polypeptide, or any integer
between the stated numbers. Similarly, fragments of E2 polypeptides can comprise 6,
10,25, 50,75,100,150,200,250,300, or 350 amino acids of an E2 polypeptide, or
any integer between the stated numbers. The El and E2 polypeptides may be from
the same or different HCV strains.
For example, epitopes derived from, e.g., me hypervariable region of E2, such
as a region spanning amino acids 384-410 or 390-410, can be included in the E2
polypeptide. A particularly effective E2 epitope to incorporate into the E2 sequence
is one which includes a consensus sequence derived from mis region, such as the
consensus sequence
Gly-Ser-Ala-Ala-Arg-Thr-Thr-Ser^ly-Fr^
Gln-Asn, which represents a consensus sequence for amino acids 390-410 of the HCV
type 1 genome. Additional epitopes of El and E2 are known and described in, e.g.,
Chien et al., International Publication No. WO 93/00365.
Moreover, the El and E2 polypeptides of the complex may lack all or a
portion of the membrane spanning domain. The membrane anchor sequence
functions to associate the polypeptide to the endoplasmic reticulum. Normally, such
polypeptides are capable of secretion into growth medium in which an organism
expressing the protein is cultured. However, as described in International Publication
No. WO 98/50556, such polypeptides may also be recovered intracellularly.
Secretion into growth medium is readily determined using a number of detection
techniques, including, e.g., polyacrylamide gel electrophoresis and the like, and
immunological techniques such as immunoprecipitation assays as described in, e.g.,
International Publication No. WO 96/04301, published February 15, 1996. With El,
generally polypeptides terminating wife about amino acid position 370 and higher
(based on the numbering of HCV-1 El) will be retained by the ER and hence not
secreted into growth media. With E2, polypeptides terminating with about amino acid
position 731 and higher (also based on the numbering of the HCV-1 E2 sequence)
will be retained by the ER and not secreted. (See, e.g., International Publication No.
WO 96/04301, published February 15,1996). It should be noted mat these amino
acid positions are not absolute and may vary to some degree. Thus, the present
invention contemplates the use of El and E2 polypeptides which retain the
transmembrane binding domain, as well as polypeptides which lack all or a portion of
the transmembrane binding domain, including El polypeptides terminating at about
amino acids 369 and lower, and E2 polypeptides, terminating at about amino acids
730 and lower, are intended to be captured by the present invention. Furthermore, the
C-terminal truncation can extend beyond the transmembrane spanning domain
towards the N-terminus. Thus, for example, El truncations occurring at positions
lower than, e.g., 360 and E2 truncations occurring at positions lower than, e.g., 715,
are also encompassed by the present invention. All mat is necessary is that the
truncated El and E2 polypeptides remain functional for their intended purpose.
However, particularly preferred truncated El constructs are those mat do not extend
beyond about amino acid 300. Most preferred are those terminating at position 360.
Preferred truncated E2 constructs are those with C-terminal truncations that do not
extend beyond about amino acid position 715. Particularly preferred E2 truncations
are those molecules truncated after any of amino acids 715-730, such as 725. If
truncated molecules are used, it is preferable to use El and E2 molecules that are both
truncated.
The El and E2 polypeptides and complexes thereof may also be present as
asialoglyeoproteins. Such asialoglycoproteins are produced by methods known in the
art, such as by using cells in which terminal glycosylation is blocked. When these
proteins are expressed in such cells and isolated by GNA lectin affinity
chromatography, the El and E2 proteins aggregate spontaneously. Detailed methods
for producing these E1E2 aggregates are described in, e.g., U.S. Patent No. 6,074,852.
Moreover, the E1B2 complexes may comprise a heterogeneous mixture of
molecules, due to clipping and proteolytic cleavage, as described above. Thus, a
composition including E1E2 complexes may include multiple species of E1E2, such
as E1E2 terminating at amino acid 746 (EIE2745), E1E2 terminating at amino acid
809 (ElE2go9), or any of me other various El and E2 molecules described above,
such as E2 molecules with N-terminal truncations of from 1-20 amino acids, such as
E2 species beginning at amino acid 387, amino acid 402, amino acid 403, etc.
It should be noted mat for convenience, the El and E2 regions are generally
defined with respect to the amino acid number relative to the polyprotein encoded by
the genome of HCV-la, as described in Choo et al. (1991) Proc Natl Acad Sci USA 88
:2451, with the initiator methionine being designated position 1. However, the
polypeptides for use with the present invention are not limited to mose derived from
the HCV-la sequence. Any strain or isolate of HCV can serve as the basis for
providing immunogenic sequences for use with the invention. In this regard, the
corresponding regions in another HCV isolate can be readily determined by aligning
sequences from the two isolates in a manner mat brings (he sequences into maximum
alignment.
Various strains and isolates of HCV are known in the art, which differ from
one another by changes in nucleotide and amino acid sequence. For example, isolate
HCV Jl.l is described in Kubo et al. (1989) Japan. Nucl. Acids Res. 17:10367-10372;
Takeuchietal.(1990)GeBe9JL:287-291;Takeuchietal.(1990)y. Gen. Virol.
71:3027-3033; and Takeuchi et al. (1990) Nucl. Acids Res. .18:4626. The complete
coding sequences of two independent isolates, HCV-J and BK, are described by Kato
et al., (1990) Proc. Natl. Acad. Sci. USA 87:9524-9528 and Takamizawa et al., (1991)
J. Virol. 65:1105-1113, respectively. HCV-1 isolates are described by Choo et al.
(1990) Brit Med. Bull. 46:423-441; Choo et al. (1991) Proc. Natl. Acad. Sci. USA
88:2451-2455 and Han et al. (1991) Proc. Natl. Acad. Sci. USA 88:1711-1715. HCV
isolates HC-J1 and HC-J4 are described in Okamoto et al. (1991) Japan J. Exp. Med.
60:167-177. HCV isolates HCT 18, HCT 23, Th, HCT 27, EC1 and EC10 are
described in Weiner et al. (1991) Virol. 180:842-848. HCV isolates Pt-1, HCV-K1
and HCV-K2 are described in Enomoto et al. (1990) Biochem. Biophys. Res.
Comrnun. 170:1021-1025. HCV isolates A, C, D & E are described in Tsukiyama-
Kohara et al. (1991) Virus Genes 5:243-254. HCV E1E2 polynucleotides and
polypeptides for use in the compositions and methods of the invention can be
obtained from any of the above cited strains of HCV or from newly discovered
isolates isolated from tissues or fluids of infected patients.
If delivery of E1E2 complexes as proteins is desired (e.g., for boosting an
immune response) such E1E2 complexes are readily produced recombinantly, either
as fusion proteins or by e.g., cotransfectmg host cells with constructs encoding for the
El and E2 polypeptides of interest Cotransfection can be accomplished either in
trans or cis, i.e., by using separate vectors or by using a single vector which bears
both of the El and E2 genes. If done using a single vector, both genes can be driven
by a single set of control elements or, alternatively, the genes can be present on the
vector in individual expression cassettes, driven by individual control elements.
Following expression, the El and E2 proteins will spontaneously associate.
Alternatively, the complexes can be formed by mixing the individual proteins together
which have been produced separately, either in purified or semi-purified form, or even
by mixing culture media in which host cells expressing the proteins, have been
cultured, if the proteins are secreted. Finally, the E1E2 complexes of the present
invention may be expressed as a fusion protein wherein the desired portion of El is
fused to the desired portion of E2.
Methods for producing E1E2 complexes from full-length, truncated El and E2
proteins which are secreted into media, as well as intracellularly produced truncated
proteins, are known in the art For example, such complexes may be produced
recombinantly, as described in U.S. Patent No. 6,121,020; Ralston et al., J. Virol.
(1993) 67:6753-6761, Grakoui et al., /. Virol. (1993) 67:1385-1395; and Lanford et
al, Virology (1993) 197:225-235.
Thus, polynucleotides encoding HCV El and E2 polypeptides for use with the
present invention can be made using standard techniques of molecular biology. For
example, polynucleotide sequences coding for the above-described molecules can be
obtained using recombinant methods, such as by screening cDNA and genomic
libraries from cells expressing the gene, or by deriving the gene from a vector known
to include the same. Furthermore, me desired gene can be isolated directly from viral
nucleic acid molecules, using techniques described in the art, such as in Houghton et
al., U.S. Patent No. 5,350,671. The gene of interest can also be produced
synthetically, rather man cloned. The molecules can be designed with appropriate
codons for the particular sequence. The complete sequence is men assembled from
overlapping oligonucleotides prepared by standard methods and assembled into a
complete coding sequence. See, e.g., Edge (1981) Nature 292:756: Nambair et al.
(1984) Science 223:1299; and Jay et al. (1984) J. Biol. Chem. 259:6311.
Thus, particular nucleotide sequences can be obtained from vectors harboring
the desired sequences or synthesized completely or in part using various
oligonucleotide synthesis techniques known in the art, such as site-directed
mutagenesis and polymerase chain reaction (PCR) techniques where appropriate.
See, e.g., Sambrook, supra. In particular, one method of obtaining nucleotide
sequences encoding the desired sequences is by annealing complementary sets of
overlapping synthetic oligonucleotides produced in a conventional, automated
polynucleotide synthesizer, followed by ligation with an appropriate DNA ligase and
amplification of the ligated nucleotide sequence via PCR. See, e.g., Jayaraman et al.
(1991) Proa Natl. Acad. Sri. USA 88:4084-4088. Additionally, oligonucleotide
directed synthesis (Jones et al. (1986) Nature 54:75-82), oligonucleotide directed
mutagenesis of preexisting nucleotide regions (Riechmann et al. (1988) Nature
332:323-327 and Verhoeyen etal. (1988) Science 239:1534-1536), and enzymatic
filling-in of gapped oligonucleotides using T4 DNA polymerase (Queen et al. (1989)
Proc. Natl. Acad. Sci. USA 86:10029-10033) can be used to provide molecules having
altered or enhanced antigen-binding capabilities and immunogenicity.
Once coding sequences have been prepared or isolated, such sequences can be
cloned into any suitable vector or replicon. Numerous cloning vectors are known to
those of skill in the art, and the selection of an appropriate cloning vector is a matter
of choice. Suitable vectors include, but are not limited to, plasmids, phages,
transposons, cosmids, chromosomes or viruses which are capable of replication when
associated with the proper control elements.
The coding sequence is then placed under the control of suitable control
elements, depending on the system to be used for expression. Thus, the coding
sequence can be placed under the control of a promoter, ribosome binding site (for
bacterial expression) and, optionally, an operator, so that the DNA sequence of
interest is transcribed into SNA by a suitable transformant The coding sequence may
or may not contain a signal peptide or leader sequence which can later be removed by
the host in post-translatkmal processing. See, e.g., U.S. Patent Nos. 4,431,739;
4,425,437; 4,338,397.
In addition to control sequences, it may be desirable to add regulatory
sequences which allow for regulation of the expression of the sequences relative to
the growth of the host cell Regulatory sequences are known to those of skill in the
art, and examples include those which cause the expression of a gene to be turned on
or off in response to a chemical or physical stimulus, including the presence of a
regulatory compound. Other types of regulatory elements may also be present in the
vector. For example, enhancer elements may be used herein to increase expression
levels of the constructs. Examples include the SV40 early gene enhancer (Dijkema et
al. (1985) EMBOJ. 4:761), me enhancer/promoter derived from the long terminal
repeat (LTR) of the Rous Sarcoma Virus (Gorman et al. (1982) Proc. Natl. Acad. Set.
USA 79:6777) and elements derived from human CMV (Boshart et al. (1985) Cell
4J_:521), such as elements included in the CMV intron A sequence (U.S. Patent No.
5,688,688). The expression cassette may further include an origin of replication for
autonomous replication in a suitable host cell, one or more selectable markers, one or
more restriction sites, a potential for high copy number and a strong promoter.
An expression vector is constructed so that the particular coding sequence is
located in the vector with the appropriate regulatory sequences, the positioning and
orientation of the coding sequence with respect to the control sequences being such
that the coding sequence is transcribed under the "control" of the control sequences
(i.e., RNA polymerase which binds to the DNA molecule at the control sequences
transcribes the coding sequence). Modification of the sequences encoding the
molecule of interest may be desirable to achieve this end. For example, in some cases
it may be necessary to modify the sequence so that it can be attached to the control
sequences in the appropriate orientation; i.e., to maintain the reading frame. The
control sequences and other regulatory sequences may be ligated to the coding
sequence prior to insertion into a vector. Alternatively, the coding sequence can be
cloned directly into an expression vector which already contains the control sequences
and an appropriate restriction site.
As explained above, it may also be desirable to produce mutants or analogs of
the polypeptide of interest Mutants or analogs of HCV polypeptides for use in the
subject compositions may be prepared by the deletion of a portion of the sequence
encoding the polypeptide of interest, by insertion of a sequence, and/or by substitution
of one or more nucleotides within the sequence. Techniques for modifying nucleotide
sequences, such as site-directed mutagenesis, and the like, are well known to those
skilled in the art See, e.g., Sambrook et al., supra; Kunkel, T.A. (1985) Proc. Natl.
Acad. Sci. USA (1985) 82:448; Geisselsoder et al (1987) BioTechniques 5:786; Zoller
and Smith (1983) Methods Enzymol. 100:468; Dalbie-McFarland et al. (1982) Proc.
Natl. Acad. Sci USA 79:6409.
The molecules can be expressed in a wide variety of systems, including insect
mammalian, bacterial, viral and yeast expression systems, all well known in the art.
For example, insect cell expression systems, such as baculovirus systems, are known
to those of skill in the art and described in, e.g., Summers and Smith, Texas
Agricultural Experiment Station Bulletin No. 1555 (1987). Materials and methods for
baculovirus/insect cell expression systems are commercially available in kit form
from, inter alia, Invitrogen, San Diego CA ("MaxBac" kit). Similarly, bacterial and
mammalian cell expression systems are well known in the art and described in, e.g.,
Sambrook et al., supra. Yeast expression systems are also known in the art and
described in, e.g., Yeast Genetic Engineering (Barr et al., eds., 1989) Butterworths,
London.
A number of appropriate host cells for use with the above systems are also
known. For example, mammalian cell lines are known in the art and include
immortalized cell lines available from the American Type Culture Collection
(ATCC), such as, but not limited to, Chinese hamster ovary (CHO) cells, HeLa cells,
baby hamster kidney (BHK) cells, monkey kidney cells (COS), human embryonic
kidney cells, human hepatocellular carcinoma cells (e.g., Hep G2), Madin-Darby
bovine kidney ("MDBK") cells, as well as others. Similarly, bacterial hosts such as E.
coli, Bacillus subtilis, and Streptococcus spp., will find use with the present
expression constructs. Yeast hosts useful in the present invention include inter alia,
Saccharomyces cerevisiae, Candida albicans, Candida maltosa, Hansenula
polymorphs Kluyveromycesfragilis, Kluyveromyces lactis, Pichia guiUerimondii,
Pichia pastoris, Schizosaccharomyces pombe and Yarrowia lipolytica. Insect cells for
use with baculovirus expression vectors include, inter alia, Aedes aegypti,
Autographa californica, Bombyx mori, Drosophila melanogaster, Spodoptera
frugiperda, and Trichoplusia ni.
Nucleic acid molecules comprising nucleotide sequences of interest can be
stably integrated into a host cell genome or maintained on a stable episomal element
in a suitable host cell using various gene delivery techniques well known in the art
See, e.g., U.S. Patent No. 5,399,346.
Depending on the expression system and host selected, the molecules are
produced by growing host cells transformed by an expression vector described above
under conditions whereby me protein is expressed. The expressed protein is men
isolated from the host cells and purified. If the expression system secretes the protein
into growth media, the product can be purified directly from the media. If it is not
secreted, it can be isolated from cell lysates. The selection of the appropriate growth
conditions and recovery methods are within the skill of the art
The above methods of recombinant production can be used to obtain other
polypeptides, such as other HCV polypeptides described below, for administration
with the E1E2 compositions.
Micropartlcles
As explained above, ElEJsw DNA is adsorbed to cationic microparticles prior
to delivery. Moreover, microparticles can be used to deliver other HCV protein
immunogens, as well as DNA encoding the same. For example, microparticles, either
cationic, anionic or uncharged, can also be used in compositions for boosting the
immune response, for example, for subsequent delivery of either E1E2 DNA, E1E2
protein, or for delivery of additional immunogens. If used to deliver protein
immunogens, the immunogen may be entrapped within or adsorbed to the
microparticle.
The term "microparticle" as used herein, refers to a particle of about 100 nm
to about 150 [an in diameter, more preferably about 200 nm to about 30 urn in
diameter, and most preferably about 500 nm to about 10 um in diameter. Preferably,
the microparticle will be of a diameter mat permits parenteral administration without
occluding needles and capillaries. Microparticle size is readily determined by
techniques well known in the art, such as photon correlation spectroscopy, laser
diffractpmetry and/or scanning electron microscopy.
Microparticles for use herein will be formed from materials mat are
sterilizable, non-toxic and biodegradable. Such materials include, without limitation,
poly(a-hydroxy acid), polyhydroxybutyric acid, polycaprolactone, polyorthoester,
poryanhydride, polyvinyl alcohol and ethylenevinyl acetate. Preferably,
microparticles for use with the present invention are derived from a poly( acid), in particular, from a poly(lactide) ("PLA") (see, e.g., U.S. Patent No.
3,773,919) or a copolymer of D^L-lactide and glycolide or grycolic acid, such as a
poly(D,L-lactide-co-glycolide) CPLG" or "PLGA") (see, e.g., U.S. Patent No.
4,767,628), or a copolymer of DJL-lactide and caprolactone. The microparticles may
be derived from any of various polymeric starting materials which have a variety of
molecular weights and, in the case of the copolymers such as PLG, a variety of
lactide:glycolide ratios, the selection of which will be largely a matter of choice,
depending in part on the desired dose of polypeptide and the disorder to be treated.
These parameters are discussed more fully below. Biodegradable polymers for
manufacturing microparticles useful in the present invention are readily commercially
available from, e.g., Boehringer Ingelheim, Germany and Birmingham Polymers, Inc.,
Birmingham, AL.
Particularly preferred polymers for use herein are PLA and PLG polymers.
These polymers are available in a variety of molecular weights, and the appropriate
molecular weight to provide the desired release rate for the polynucleotide or
polypeptide in question is readily determined by one of skill m the art. Thus, e.g., for
PLA, a suitable molecular weight will be on the order of about 2000 to 250,000. For
PLG, suitable molecular weights will generally range from about 10,000 to about
200,000, preferably about 15,000 to about 150,000, and most preferably about 50,000
to about 100,000.
If a copolymer such as PLG is used to form the microparticles, a variety of
lactiderglycolide ratios will find use herein and the ratio is largely a matter of choice,
depending in part on the rate of degradation desired. For example, a 50:50 PLG
polymer, containing 50% D,L-lactide and 50% glycolide, will provide a fast resorbing
copolymer while 75:25 PLG degrades more slowly, and 85:15 and 90:10, even more
slowly, due to the increased lactide component It is readily apparent mat a suitable
ratio of lactide:grycblide is easily determined by one of skill in the art based on me
nature disorder to be treated. Moreover, mixtures of microparticles with varying
lactide:glycolide ratios will find use in me formulations in order to achieve the desired
release kinetics. PLG copolymers with varying lactiderglycolide ratios and molecular
weights are readily available commercially from a number of sources including from
Boehringer Ingelheim, Germany and Binningham Polymers, Inc., Birmingham, AL.
These polymers can also be synthesized by simple polycondensation of the lactic acid
component using techniques well known-in the art, such as described in Tabata et al.,
J. Biomed. Mater. Res. (1988)22:837-858.
Typically, microparticles when used to deliver E1B2 DNA (or other DNA
encoding other HCV immunogens and me like) are prepared such that the DNA is
adsorbed on the surface. For protein delivery, the antigen can either be entrapped or
adsorbed. .Several techniques are known in the art for preparing such microparticles.
For example, double emulsion/solvent evaporation techniques, such as described in
U.S. Patent No. 3,523,907 and Ogawa et al., Chem. Pharm. Bull. (1988) 36:1095-
1103, can be used herein to make the microparticles. These techniques involve me
formation of a primary emulsion consisting of droplets of polymer solution, which is
subsequently mixed with a continuous aqueous phase containing a particle
stabilizer/surfactant
More particularly, a water-in-oil-in-water (w/o/w) solvent evaporation system
can be used to form the microparticles, as described by O'Hagan et al., Vaccine
(1993) 11:965-969 and Jefifory et al., Pharm. Res. (1993) 10:362. In this technique,
the particular polymer is combined with an organic solvent, such as ethyl acetate,
dimethylchloride (also called methylene chloride and dichloromethane), acetonitrile,
acetone, chloroform, and the like. The polymer will be provided in about a 2-15%,
more preferably about a 4-10% and most preferably, a 6% solution, in organic
solvent. The polymer solution is emulsified using e.g., an homogenizer. The
emulsion is then combined with a larger volume of an aqueous solution of an
emulsion stabilizer such as polyvinyl alcohol (PVA) or polyvinyl pyrrolidone. The
emulsion stabilizer is typically provided in about a 2-15% solution, more typically
about a 4-10% solution. The mixture is men homogenized to produce a stable w/o/w
double emulsion. Organic solvents are men evaporated.
The formulation parameters can be manipulated to allow the preparation of
small (30um) microparticles. See, e.g., Jeffery et al., Pharm. Res.
(1993) H):362-368; McGee et al., J. Microencap. (1996). For example, reduced
agitation results in larger microparticles, as does an increase in internal phase volume.
Small particles are produced by low aqueous phase volumes with high concentrations
of PVA. Microparticles can also be formed using spray-drying and coacervation
as described in, e.g., Thomasin et al., /. Controlled Release (1996) 41; 131; U.S.
Patent No. 2,800,457; Masters, K. (1976) Spray Drying 2nd Ed. Wiley, New York;
air-suspension coating techniques, such as pan coating and Wurster coating, as
described by Hall et al., (1980) The "Wurster Process" in Controlled Release
Technologies: Methods, Theory, and Applications (A.F. Kydonieus, ed.), Vol. 2, pp.
133-154 CRC Press, Boca Raton, Florida and Deasy, P.B., Crit. Rev. Ther. Drug
Carrier Syst (1988) S(2):99-139; and ionic gelation as described by, e.g., Lim et al.,
Science (1980) 210:908-910.
Particle size can be determined by, e.g., laser light scattering, using for
example, a spectrometer incorporating a helium-neon laser. Generally, particle size is
determined at room temperature and involves multiple analyses of the sample in
question (e.g., 5-10 times) to yield an average value for the particle diameter. Particle
size is also readily determined using scanning electron microscopy (SBM).
Prior to use of the microparticles, DNA or protein content (e.g., the amount of
DNA or protein adsorbed to the microparticle or entrapped therein) may be
determined so that an appropriate amount of the microparticles may be delivered to
the subject in order to elicit an appropriate immunological response. DNA and
protein content of me microparticles can be determined according to methods known
in the art, such as by disrupting the microparticles and extracting the entrapped or
adsorbed molecules. For example, microparticles can be dissolved in
dimethylchloride and the agent extracted into distilled water, as described in, e.g.,
Cohen et al., Pharm. Res. (1991) 8:713; EWridge et al., Infect. Immun. (1991)
59:2978; and mdridgeetal.,^ Controlled Release (1990)11:205. Alternatively,
microparticles can be dispersed in 0.1 M NaOH containing 5% (w/v) SDS. * The
sample is agitated, centrifoged and the supernatant assayed for the particular agent
using an appropriate assay. See, e.g., O'Hagan et al., Int. J. Pharm. (1994) 103:37-
45.
The particles will preferably comprise from about .05% to about 40% (wAv)
DNA or polypeptide, such as .1% to 30%, e.g., .5%...1%...1.5%...2% etc. to 25%
(w/w), and even more preferably about .5%-4% to about 18%-20% (w/w). The load
of DNA or polypeptide in the microparticles will depend on the desired dose and the
condition being treated, as discussed in more detail below.
Following preparation, microparticles can be stored as is or freeze-dried for
further use. In order to adsorb DNA and/or protein to the microparticles, the
microparticle preparation is simply mixed with the molecule of interest and the
resulting formulation can again be h/ophilized prior to use. Generally, for purposes of
the present invention, approximately 1 ug to 100 mg of DNA, such as 10 ug to 5mg,
or 100 ug to 500 ug, such as 1...5...10...20... 30...40...50...60...100 ug and so on, to
500 ug DNA, and any integer within these ranges, will be adsorbed with the
microparticles described herein.
One preferred method for adsorbing macromolecules onto prepared
microparticles is described in International Publication No. WO 00/050006. Briefly,
microparticles are rehydrated and dispersed to an essentially monomelic suspension
of microparticles using dialyzable anionic or cationic detergents. Useful detergents
include, but are not limited to, any of the various N-methylghicamides (known as
MEGAs), such as heptanoyl-N-memylgkcamide (MEGA-7), octanoyl-N-
methylghicamide (MEGA-8), nonanoyl-N-methylglucamide (MEGA-9), and
decanoyl-N-methyl-glucamide (MEGA-10); cholic acid; sodium cholate; deoxycholic
acid; sodium deoxycholate; taurocholic acid; sodium taurocholate; taurodeoxycholic
acid; sodium taurodeoxycholate; 3-[(3-cholajnidopropyl)dimemylainmoruo] -1-
propane-sulfonate (CHAPS); 3-[(3-cholamidopropyl) dimemylammonioJ-2-hydroxy-
1-propane-sulfonate (CHAPSO); Bdodecyl-N,N-dimemyl-3-ammonio-l-propane-
sulfonate (ZWITTERGENT 3-12); N^4»is-(3-D-gluconeamidopropyl)-
deoxycholanude (DEOXY-BIGCHAP); Boctylglucoside; sucrose monolaurate;
glycocholic acid/sodium glycocholate; laurosarcosine (sodium salt); grycodeoxycholic
acid/sodium glycodeoxycholate; sodium dodceyl sulfate (SDS); 3-(trimemylsilyl)-l-
propanesulfonic acid (DSS); cetrimide (CTAB, the principal component of which is
hexadecyltrimemylammonium bromide); hexadecyltrimefliylanimonium bromide;
dodecyltrimethylammonium bromide; hexadecyltrimemyl-ammonium bromide;
tetradecyltrimemylammonium bromide; benzyl dimethyldodecylammonium bromide;
benzyl dimethylhexadecylammonium chloride; and benzyl
dimethyltetradecylammonium bromide. The above detergents are commercially
available from e.g., Sigma Chemical Co., St Louis, MO. Various cationic lipids
known in the art can also be used as detergents. See Balasubramaniam et al., 1996,
Gene Ther., y.ltt-ll and Gao, X., and L. Huang. 1995, Gene Ther., 2:7110-722.
The microparticle/detergent mixture is then physically ground, e.g., using a
ceramic mortar and pestle, until a smooth slurry is formed. An appropriate aqueous
buffer, such as phosphate buffered saline (PBS) or Tris buffered saline, is then added
and the resulting mixture sonicated or homogenized until the microparticles are fully
suspended. The macromolecule of interest, such as E1E2 DNA or polypeptide, is
then added to die microparticle suspension and the system dialyzed to remove
detergent. The polymer microparticles and detergent system are preferably chosen
such that the macromolecule of interest will adsorb to the microparticle surface while
still maintaining activity of the macromolecule. The resulting microparticles
containing surface-adsorbed macromolecule may be washed free of unbound
macromolecule and stored as a suspension in an appropriate buffer formulation, or
lyophilized with the appropriate excipients, as described further below.
Microparticles rnanufectured in fee presence of charged detergents, such as
anionic or canonic detergents, yield microparticles with a charged surface having a
net negative or a net positive charge. These microparticles can adsorb a greater
variety of molecules. For example, microparticles manufactured with anionic
detergents, such as sodium dodceyl sulfate (SDS) or 3-(trirnethylsilyl)-l-
propanesulfonic acid (DSS), i.e. PLG/SDS or PLG/DSS microparticles, adsorb
positively charged hnrounogens, such as proteins, and are termed "anionic" herein.
Similarly, microparticles manufactured with cationic detergents, such as CTAB, i.e.
PLG/CTAB microparticles, adsorb negatively charged macromolecules, such as DNA
and are termed "cationic" herein.
Other HCV Polypeptides and Polynucleotides
As explained above, the methods of the present invention may employ
other compositions comprising HCV antigens or DNA encoding such antigens. Such
compositions can be delivered prior to, subsequent to, or concurrent with the ElE2go9
DNA compositions, as well as prior to, subsequent to, or concurrent with
compositions for boosting the immune response, if used.
The genome of the hepatitis C virus typically contains a single open reading
frame of approximately 9,600 nucleotides, which is transcribed into a polyprotein.
The full-length sequence of the polyprotein is disclosed in European Publication No.
388,232 and U.S. Patent No. 6,150,087. As shown in Table 1 and Figure 1, An HCV
polyprotein, upon cleavage, produces at least ten distinct products, in the order of
NH2.Core-El-E2-p7-NS2-NS3-NS4a-NS4b-NS5a-NS5b-COOH. The core
polypeptide occurs at positions 1-191, numbered relative to HCV-1 (see, Choo et al.
(1991) Proc. Natl. Acad. Sci. USA 88:2451-2455, for the HCV-1 genome). This
polypeptide is further processed to produce an HCV polypeptide with approximately
amino acids 1-173. The envelope polypeptides, El and E2, occur at about positions
192-383 and 384-746, respectively. The P7 domain is found at about positions
747-809. NS2 is an integral membrane protein with proteolytic activity and is found
at about positions 810-1026 of the polyprotein. NS2, either alone or in combination
with NS3 (found at about positions 1027-1657), cleaves the NS2-NS3 sissle bond
which in turn generates the NS3 N-terminus and releases a large polyprotein that
includes both serine protease and RNA helicase activities. The NS3 protease, found
at about positions 1027-1207, serves to process the remaining polyprotein. The
helicase activity is found at about positions 1193-1657. Completion of poryprotein
maturation is initiated by autocatah/tic cleavage at the NS3-NS4a junction, catalyzed
by the NS3 serine protease. Subsequent NS3-mediated cleavages of the HCV
polyprotein appear to involve recognition of polyprotein cleavage junctions by an
NS3 molecule of another polypeptide. In these reactions, NS3 liberates an NS3
cofactor (NS4a, found about positions 1658-1711), two proteins (NS4b found at about
positions 1712-1972, and NS5a found at about positions 1973-2420), and an
RNA-dependent RNA polymerase (NS5b found at about positions 2421-3011).
?Numbered relative to HCV-1. See, Choo et al. (1991) Proc. Natl. Acad. Sci.
USA 88:2451-2455.
Sequences for the above HCV polyprotein products, DNA encoding the same
and immunogenic polypeptides derived therefrom, are known (see, e.g., U.S. Patent
No. 5,350,671). For example, a number of general and specific immunogenic
polypeptides, derived from the HCV polyprotein, have been described. See, e.g.,
Houghton et al., European Publ. Nos. 318,216 and 388,232; Choo et al. Science
(1989) 244:359-362; Kuo et al. Science (1989) 244:362-364; Houghton et al.
Hepatology (1991) J4.381-388; Chien et aL Proc. Nail. Acad. Sci. USA (1992)
89:10011-10015; Chien et al. J. Gastroent. Hepatol. (1993) 8:S33-39; Chien et al.,
International Publ. No. WO 93/00365; Chien, D.Y., International Publ. No. WO
94/01778. These publications provide an extensive background on HCV generally, as
well as on the manufacture and uses of HCV polypeptide immunological reagents.
Any desired immunogenic HCV polypeptide or DNA encoding the same can
be utilized with the present invention. For example, HCV polypeptides derived from
the Core region, such as polypeptides derived from the region round between amino
acids 1-191; amino acids 10-53; amino acids 10-45; amino acids 67-88; amino acids
86-100; 81-130; amino acids 121-135; amino acids 120-130; amino acids 121-170;
and any of the Core epitopes identified in, e.g., Houghton et al., U.S. Patent No.
5,350,671; Chien et al. Proc. Natl. Acad Set. USA (1992) 89:10011-10015; Chien et
al. J. Gastroent. Hepatol. (1993) 8:S33-39; Chien et al., International Publ. No. WO
93/00365; Chien, D.Y., International Publ. No. WO 94/01778; and U.S. Patent No.
6,150,087, will find use with the subject compositions and methods.
Additionally, polypeptides derived from the nonstructural regions of the virus
will also find use herein. The NS3/4a region of the HCV polyprotein has been
described and the amino acid sequence and overall structure of the protein are
disclosed in Yao et al. Structure (November 1999) 7:1353-1363. See, also,
Dasmahapatra et al., U.S. Patent No. 5,843,752. As explained above, either the native
sequence or immunogenic analogs can be used in the subject formulations.
Dasmahapatra et aL, U.S. Patent No. 5,843,752 and Zhang et al., U.S. Patent No.
5,990,276, both describe analogs of NS3/4a and methods of making the same.
Moreover, polypeptides for use in the subject compositions and methods may
be derived from me NS3 region of the HCV polyprotein. A number of such
polypeptides are known, including, but not limited to polypeptides derived from the
c33c and clOO regions, as well as fusion proteins comprising an NS3 epitope, such as
c25. These and other NS3 polypeptides are useful in the present compositions and are
known in the art and described in, e.g., Houghton et al, U.S. Patent No. 5350,671;
Chien et al. Proc. NatL Acad. Sci. USA (1992) 89:10011-10015; Chien et al. /.
Gastroent Hepatol (1993) 8:S33-39; Chien et al., International Publ. No. WO
93/00365; Chien, D.Y., International Publ. No. WO 94/01778; and U.S. Patent No.
6,150,087.
Additionally, multiple epitope fusion antigens (termed "MEFAs"), as
described in, e.g., U.S. Patent Nos. 6,514,731 and 6,428,792, may be used in the
subject compositions. Such MEFAs include multiple epitopes derived from two or
more of the various viral regions. The epitopes are preferably from more man one
HCV strain, thus providing the added ability to protect against multiple strains of
HCV in a single vaccine.
As explained above, for convenience, the various HCV regions have been
defined with respect to the amino acid number relative to the polyprotein encoded by
the genome of HCV-la, as described in Choo et al. (1991) Proc Natl Acad Sci USA 88
:2451, with the initiator methionine being designated position 1. However, HCV
polypeptides and polynucleotides for use with the present invention are not limited to
those derived from the HCV-la sequence and any strain or isolate of HCV can serve
as the basis for providing antigenic sequences for use with the invention, as explained
in detail above.
The above polynucleotides and polypeptides can be obtained using the
methods of recombinant production described above for E1E2 polypeptides and
polynucleotides.
Immunogenic Compositions and Administration
A. Compositions
Once produced, the E1E2 polynucleotides, polypeptides or other immunogens
may be provided in immunogenic compositions, in e.g., prophylactic (i.e., to prevent
infection) or therapeutic (to treat HCV following infection) vaccine compositions.
The compositions will generally include one or more "pharmaceuticalry acceptable
excipients or vehicles" such as water, saline, glycerol, ethanol^ete. Additionally,
auxiliary substances, such as wetting or emulsifying agents, pH buffering substances,
and the like, may be present in such vehicles.
A carrier is optionally present, e.g., in protein compositions used to boost the
immune response to the ElE2n>9 DNA. Carriers are molecules that do not
themselves induce the production of antibodies harmful to the individual receiving the
composition. Suitable carriers are typically large, slowly metabolized
macromolecules such as proteins, polysaccharides, porylactic acids, porygrycollic
acids, polymeric amino acids, amino acid copolymers, lipid aggregates (such as oil
droplets or liposomes), and inactive virus particles. Such carriers are well known to
those of ordinary skill in the art Furthermore, the immunogenic polypeptide may be
conjugated to a bacterial toxoid, such as toxoid from diphtheria, tetanus, cholera, etc.
Adjuvants may also be present in the compositions to enhance the immune
response, such as but are not limited to: (1) aluminum salts (alum), such as aluminum
hydroxide, aluminum phosphate, aluminum sulfate, etc.; (2) oil-in-water emulsion
formulations (with or without other specific immunostimulating agents such as
muramyl peptides (see below) or bacterial cell wall components), such as for example
(a) MF59 (PCT Publ. No. WO 90/14837; U.S. PatentNos. 6,299,884 and 6,451,325),
containing 5% Squalene, 0.5% Tween 80, and 0.5% Span 85 (optionally containing
various amounts of MTP-PE), formulated into submicron particles using a
microfluidizer such as Model HOY microfluidizer (Microfluidics, Newton, MA),
(b) SAF, containing 10% Squalane, 0.4% Tween 80, 5% pluronic-blocked polymer
L121, and thr-MDP (see below) either microfhiidized into a submicron emulsion or
vortexed to generate a larger particle size emulsion, and (c) Ribi^M adjuvant system
(RAS), (Ribi Immunochem, Hamilton, MT) containing 2% Squalene, 0.2% Tween 80,
and one or more bacterial cell wall components from the group consisting of
monophosphorylipid A (MPL), trehalose dimycolate (TDM), and cell wall skeleton
(CWS), preferably MPL + CWS (Detox™); (3) saponin adjuvants, such as QS21 or
Stimulon™ (Cambridge Bioscience, Worcester, MA) may be used or particles
generated therefrom such as ISCOMs (immunostimulating complexes), which
ISCOMs may be devoid of additional detergent (see, e.g., International Publication
No. WO 00/07621); (4) Complete Freunds Adjuvant (CFA) and Incomplete Freunds
Adjuvant (IFA); (S) cytokines, such as interleukins, such as IL-1, EL-2, EL-4, DL-5,
IL-6, EL-7, IL-12 etc. (see, e.g., International Publication No. WO 99/44636),
interferons, such as gamma interferon, macrophage colony stimulating factor
(M-CSF), tumor necrosis factor (TNF), etc.; (6) detoxified mutants of a bacterial
ADP-ribosylating toxin such as a cholera toxin (CT), a pertussis toxin (PT), or an E.
coli heat-labile toxin (LT), particularly LT-K63 (where lysine is substituted for the
wild-type amino acid at position 63) LT-R72 (where argmine is substituted for die
wild-type amino acid at position 72), CT-S109 (where serine is substituted for the
wild-type amino acid at position 109), and PT-K9/G129 (where lysine is substituted
for the wild-type amino acid at position 9 and glycine substituted at position 129)
(see, e.g., International Publication Nos. W093/13202 and W092/19265); (7)
monophosporyl lipid A (MPL) or 3-O-deacylated MPL (3dMPL) (see, e.g., GB
2220221; EPA 0689454), optionally in the substantial absence of alum (see, e.g.,
International Publication No. WO 00/56358); (8) combinations of 3dMPL with, for
example, QS21 and/or oil-in-water emulations (see, e.g., EPA 0835318; EPA
0735898; EPA 0761231); (9) a polyoxyethylene ether or a polyoxyethylene ester (see,
e.g., International Publication No. WO 99/52549); (10) a saponin and an
immunostimulatory oligonucleotide, such as a CpG oligonucleotide (see, e.g.,
International Publication No. WO 00/62800); (11) an irnmunosthnulant and a particle
of a metal salt (see, e.g., International Publication No. WO 00/23105); (12) a saponin
and an oil-in-water emulsion (see, e.g., International Publication No. WO 99/11241;
(13) a saponin (e.g., QS21) + 3dMPL + BL-12 (optionally + a sterol) (see, e.g.,
International Publication No. WO 98/57659); and (14) other substances that act as
immunostimulating agents to enhance the effectiveness of the composition.
Muramyl peptides include, but ate not limited to
N-acetyl-muramyl-L-threonyl- D-isoglutamine (thr-MDP),
N-acteyl-nonnuramyl-L-alanyl-D-isogmatme (nor-MDP), N-
acetylmuramyl-L-alairyl-I>isogluatDa^
hydroxyphosphoryloxy)-etbylainine (MTP-PE), etc.
Particularly preferred adjuvantB for use in the compositions are submicron oil-
in-water emulsions. Preferred submicron oil-in-water emulsions for use herein are
squalene/water emulsions optionally containing varying amounts of MTP-PE, such as
a submicron oil-in-water emulsions containing 4-5% w/v squalene, 0.25-1.0% w/v
Tween 80 ™ (poryoxyelflrylenesorbitari monooleate), and/or 0.25-1.0% Span 85™
(sorbitan trioleate), and optionally,
N-acerylmuramyl-L-alanyl-D-isogluatniinyl-L-alaiiiiJe-2-
(l'-2'- example, the submicron oil-in-water emulsion known as "MF59" (International
Publication No. WO 90/14837; U.S. Patent Nos. 6,299,884 and 6,451,325; and Ott et
al., "MF59 — Design and Evaluation of a Safe and Potent Adjuvant for Human
Vaccines" in Vaccine Design: The Submit and Adjuvant Approach (Powell, M.F. and
Newman, M.J. eds.) Plenum Press, New York, 1995, pp. 277-296). MF59 contains
4-5% w/v Squalene (e.g., 4.3%), 0.25-0.5% w/v Tween 80™, and 0.5% w/v Span
85TM gad optionally contains various amounts of MTP-PE, formulated into
submicron particles using a microfhiidizer such as Model HOY microfluidizer
(Microfluidics, Newton, MA). For example, MTP-PE may be present in an amount of
about 0-500 ug/dose, more preferably 0-250 ug/dose and most preferably, 0-100
ug/dose. As used herein, the term "MF59-0" refers to the above submicron
oil-in-water emulsion lacking MTP-PE, while me term MF59-MTP denotes a
formulation that contains MTP-PE. For instance, "MF59-100" contains 100 ug
MTP-PE per dose, and so on. MF69, another submicron oil-in-water emulsion for use
herein, contains 4.3% w/v squalene, 0.25% w/v Tween 80™, and 0.75% w/v Span
85TM and optionally MTP-PE. Yet another submicron oil-in-water emulsion is
MF75, also known as SAF, containing 10% squalene, 0.4% Tween 80™, 5%
pluronic-blocked polymer L121, and thr-MDP, also microfluidized into a submicron
emulsion. MF75-MTP denotes an MF75 formulation that includes MIT, such as
from 100-400 ug MTP-PE per dose.
Submicron oil-in-water emulsions, methods of making the same and
immunostimulating agents, such as muramyl peptides, for use in the compositions, are
described in detail in International Publication No. WO 90/14837 and U.S. Patent
Nos. 6,299,884 and 6,451,325.
Other preferred agents to include in the subject compositions are
immunostimulatory molecules such as immunostimulatory nucleic acid sequences
(ISS), including but not limited to, unmemylated CpG motifs, such as CpG
oligonucleotides.
Oligonucleotides containing unmemylated CpG motifs have been shown to induce
activation of B cells, NK cells and antigen-presenting cells (APCs), such as
monocytes and macrophages. See, e.g., U.S. Patent No. 6,207,646. Thus, adjuvants
derived from the CpG family of molecules, CpG dinucleotides and synthetic
oligonucleotides which comprise CpG motifs (see, e.g., Krieg et al. Nature (1995)
374:546 and Davis et al J. Immunol (1998) 160:870-876) such as any of the various
immunostimulatory CpG oligonucleotides disclosed in U.S. Patent No. 6,207,646,
may be used in the subject methods and compositions. Such CpG oligonucleotides
generally comprise at least 8 up to about 100 basepairs, preferably 8 to 40 basepairs,
more preferably 15-35 basepairs, preferably 15-25 basepairs, and any number of
basepairs between these values. For example, oligonucleotides comprising the
consensus CpG motif, represented by the formula 5'-XiCGX2-3', where Xj and X2
are nucleotides and C is unmemylated, will find use as immunostimulatory CpG
molecules. Generally, Xj is A, G or T, and X2 is C or T. Other useful CpG
molecules include those captured by the formula 5'-XiX2CGX3X4, where Xi and X2
are a sequence such as GpT, GpG, GpA, ApA, ApT, ApG, CpT, CpA, CpG, TpA,
TpT or TpG, and X3 and X4 are TpT, CpT, ApT, ApG, CpG, TpC, ApC, CpC, TpA,
ApA, GpT, CpA, or TpG, wherein "p" signifies a phosphate bond. Preferably, the
oligonucleotides do not include a GCG sequence at ot near the 5'- and/or 3' terminus.
Additionally, the CpG is preferably flanked on its 5'-end with two purines (preferably
a GpA dinucleotide) or with a purine and a pyrimidine (preferably, GpT), and flanked
on its 3'-end with two pyrimidines, preferably a TpT or TpC dinucleotide. Thus,
preferred molecules will comprise the sequence GACGTT, GACGTC, GTCGTT or
GTCGCT, and these sequences will be flanked by several additional nucleotides. The
nucleotides outside of mis central core area appear to be extremely amendable to
change.
Moreover, the CpG oligonucleotides for use herein may be double- or
single-stranded. Double-stranded molecules are more stable in vivo while
single-stranded molecules display enhanced immune activity. Additionally, the
phosphate backbone may be modified, such as phosphorodithioate-modified, in order
to enhance the immunostimulatory activity of the CpG molecule. As described in
U.S. Patent No. 6,207,646, CpG molecules with phosphoromioate backbones
preferentially activate B-cells, while those having phosphodiester backbones
preferentially activate monocytic (macrophages, dendritic cells and monocytes) and
NK cells.
CpG molecules can readily be tested for their ability to stimulate an immune
response using standard techniques, well known in the art For example, the ability of
the molecule to stimulate a humoral and/or cellular immune response is readily
determined using the immunoassays described above. Moreover, the immunogenic
compositions can be administered with and without me CpG molecule to determine
whether an immune response is enhanced.
Compositions for use in the invention will comprise a therapeutically effective
amount of DNA encoding the E1E2 complexes (or a therapeutically effective amount
of protein) and any other of the above-mentioned components, as needed. By
"therapeutically effective amount" is meant an amount of an protein or DNA encoding
the same which will induce an immunological response, preferably a protective
immunological response, in the individual to which it is administered. Such a
response will generally result in the development in the subject of an antibody-
mediated and/or a secretory or cellular immune response to the composition. Usually,
such a response includes but is not limited to one or more of the following effects; the
production of antibodies from any of the immunological classes, such as
immunoglobulins A, D, E, G or M; the proliferation of B and T lymphocytes; the
provision of activation, growth and differentiation signals to immunological cells;
expansion of helper T cell, suppressor T cell, and/or cytotoxic T cell and/or y5T cell
populations.
E1E2 protein compositions, e.g., used to boost the immune response following
administration of E1E2«» DNA, can comprise mixtures of one or more of the E1E2
complexes, such as E1E2 complexes derived from more man one viral isolate, as well
as additional HCV antigens. Moreover, as explained above, me E1E2 complexes may
be present as a heterogeneous mixture of molecules, due to cupping and proteolytic
cleavage. Thus, a composition including E1E2 complexes may include multiple
species of E1E2, such as E1E2 terminating at amino acid 746^ (EIB2745), E1E2
terminating at amino acid 809 (ElE2gQ9), or any of the other various El and E2
molecules described above, such as E2 molecules with N-terminal truncations of from
1-20 amino acids, such as E2 species beginning at amino acid 387, amino acid 402,
amino acid 403, etc.
The compositions (bom DNA and protein) may be administered in conjunction
with other antigens and immunoregulatory agents, for example, immunoglobulins,
cytokines, lymphokines, and chemokines, including but not limited to cytokines such
as IL-2, modified EL-2 (cysl25 to serl25), GM-CSF, EL-12, y- interferon, IP-10,
MBPlp, FLP-3, ribavirin and RANTES.
B. Administration
Typically, the immunogenic compositions (both DNA and protein) are
prepared as injectables, either as liquid solutions or suspensions; solid forms suitable
for solution in, or suspension in, liquid vehicles prior to injection may also be
prepared. Thus, once formulated, the compositions are conventionally administered
parenterally, e.g., by injection, either subcutaneously or intramuscularly. Additional
formulations suitable for other modes of administration include oral and pulmonary
formulations, suppositories, and transdermal applications. Dosage treatment may be a
single dose schedule or a multiple dose schedule. Preferably, die effective amount is
sufficient to bring about treatment or prevention of disease symptoms. The exact
amount necessary will vary depending on the subject being treated; the age and
general condition of the individual to be treated; the capacity of the individual's
immune system to synthesize antibodies; the degree of protection desired; the severity
of the condition being treated; the particular macromolecule selected and its mode of
administration, among other factors. An appropriate effective amount can be readily
determined by one of skill in the art. A "therapeutically effective amount" will fall in
a relatively broad range that can be determined through routine trials using in vitro
and in vivo models known in the art The amount of E1E2 DNA and polypeptides
used in the examples below provides general guidance which can be used to optimize
the elicitation of anti-El, anti-E2 and/or anti-ElE2 antibodies.
For example, the immunogen is preferably injected intramuscularly to a large
mammal, such as a primate, for example, a baboon, chimpanzee, or human. The
amount of E1E2 DNA adsorbed to the cationic microparticles will generally be about
1 ug to 500 mg of DNA, such as 5 ug to 100 mg of DNA, e.g., 10 ug to 50 mg, or
100 ug to 5 mg, such as 20... 30...40...50...60...100...200 ug and so on, to 500 ug
DNA, and any integer between the stated ranges. The E1E2 expression constructs of
the present invention are administered using standard gene delivery protocols.
Methods for gene delivery are known in the art. See, e.g., U.S. Patent Nos. 5,399,346,
5,580,859, 5,589,466. E1E2809 DNA can be delivered either directly to the vertebrate
subject or, alternatively, delivered ex vivo, to cells derived from the subject and the
cells rehnplanted in the subject.
Administration of DNA encoding E1E2 polypeptides can elicit a cellular
immune response, and/or an anti-El, anti-E2 and/or anti-ElE2 antibody titer in the
mammal that lasts for at least 1 week, 2 weeks, 1 month, 2 months, 3 months, 4
months, 6 months, 1 year, or longer. E1E2 DNA can also be administered to provide
a memory response. If such a response is achieved, antibody titers may decline over
time, however exposure to the HCV virus or immunogen results in the rapid induction
i of antibodies, e.g., within only a few days. Optionally, antibody titers can be
maintained in a mammal by providing one or more booster injections of the E1E2
polypeptides, as explained above, at 2 weeks, 1 month, 2 months, 3 months, 4 months,
S months, 6 months, 1 year, or more after the primary injection.
Preferably, an antibody titer of at least 10,100,150,175,200,300,400, 500,
750,1,000,1,500,2,000,3,000,5,000,10,000,20,000,30,000,40,000,50,000
(geometric mean titer), or higher, is elicited, or any number between the stated titer, as
determined using a standard immunoassay, such as the immunoassay described in the
examples below. See, e.g., Chien et al., Lancet (1993) 342:933; and Chien et al.,
Proc. Natl. Acad. Sd USA (1992) 89:10011.
For an E1E2 protein boost, generally about 0.1 ug to about 5.0 mg of
immunogen will be delivered per dose, or any amount between the stated ranges, such
as .5 ug to about 10 mg, 1 ug to about 2 mg, 2.5 ug to about 250 ug, 4 ug to about 200
ug, such as 4,5,6,7, 8,9,10...20...30...40...50...60...70...80...90...100, etc., fig pea-
dose. The immunogens can be administered either to a mammal that is not infected
with an HCV or can be administered to an HCV-infected mammal.
Deposits of Strains Useful in Practicing the Invention
A deposit of biologically pure cultures of the following strains was made with
the American Type Culture Collection, 10801 University Boulevard, Manassas, VA.
The accession number indicated was assigned after successful viability testing, and
the requisite fees were paid, made under the provisions of the Budapest Treaty on the
International Recognition of the Deposit of Microorganisms for the Purpose of Patent
Procedure and the Regulations thereunder (Budapest Treaty). This assures
maintenance of viable cultures for a period of thirty (30) years from the date of
deposit. The organisms will be made available by the ATCC under the terms of the
Budapest Treaty, which assures permanent and unrestricted availability of the
progeny to one determined by the U.S. Commissioner of Patents and Trademarks to
be entitled thereto according to 35 U.S.C. §122 and the Commissioner's rules pursuant
thereto (including 37 C.F.R. §1.12 with particular reference to 886 OG 638). Upon
the granting of a patent, all restrictions on the availability to the public of the
deposited cultures will be irrevocably removed.
These deposits are provided merely as convenience to those of skill in the art,
and are not an admission that a deposit is required under 35 U.S.C. § 112. The nucleic
acid sequences of these genes, as well as the amino acid sequences of the molecules
encoded thereby are controlling in the event of any conflict with the description
herein. A license may be required to make, use, or sell the deposited materials, and
no such license is hereby granted.
Phumid Deposit Date ATCCNo.
E1E2-809 August 16,2001 PTA-3643
2. Experimental
Below are examples of specific embodiments for carrying out the present
invention. The examples are offered for illustrative purposes only, and are not
intended to limit the scope of the present invention in any way.
Efforts have been made to ensure accuracy with respect to numbers used (e.g.,
amounts, temperatures, etc.), but some experimental error and deviation should, of
course, be allowed for.
Materials and Methods
Enzymes were purchased from commercial sources, and used according to the
manufacturers' directions.
In the isolation of DNA fragments, except where noted, all DNA
manipulations were done according to standard procedures. See, Sambrook et al.,
supra. Restriction enzymes, T4 DNA ligase, E. coli, DNA polymerase II, Klenow
fragment, and other biological reagents can be purchased from commercial suppliers
and used according to the manufacturers' directions. Double stranded DNA
fragments were separated on agarose gels.
Sources for chemical reagents generally include Sigma Chemical Company,
St. Louis, MO; Alrich, Milwaukee, WI; Roche Molecular Biochemicals, Indianapolis,
IN.
Plasmid design.
The plasmid pCMVtpaElE2p7 (6275 bp) was constructed by cloning HCV-1
encoding amino acids 192 to 809 with the upstream tissue plasminogen activator (tea)
signal sequence into the pnewCMV-H expression vector. The pnewCMV vector is a
pUC19-based cloning vector comprising the following elements: an SV40 origin of
replication, a human CMV enhancer/promoter, a human CMV intron, a human tissue
plasminogen activator (tPA) leader, a bovine growth hormone poly A terminator and
an ampicillin resistance gene.
El E2go9 was expressed from recombinant CHO cells as described previously
(Spaeteetal., Virology (1992) 188:819-830). E1E2 antigen was extracted from
inside the CHO cells with Triton X-100 detergent The B1E2 antigen was purified
using Galanthus nivalis lectin agarose (Vector Laboratories, Burlingame, Calif.)
chromatography and fast flow S-Sepharose cation-exhange chromatography
(Pharmacia). The oil-in-water adjuvant MF59 was manufactured at Chiron Vaccines,
Marburg and has previously been described in detail (Ott et al., "MF59 — Design and
Evaluation of a Safe and Potent Adjuvant for Human Vaccines" in Vaccine Design:
The Subunit and Adjuvant Approach (Powell, M.F. and Newman, MJ. eds.) Plenum
Press, New York, 1995, pp. 277-296)
For the CTL assays, fifty-four peptides (each 20 amino acids in length
overlapping by 10 amino acids) spanning the El and E2 proteins (amino acids 192-
809) of HCV-1 a were synthesized with free amine N-termini and free acid C-termini
by Chiron Mimotopes Pry. Ltd. (Clayton, Australia). The lyophilized peptides were
resuspended in 10% DMSO in water, and then each was diluted to 2 mg/ml. Using
equal volumes of each peptide, 2 pools of 27 peptides each were made: Pool 1 (amino
acids 192-470) and Pool 2 (amino acids 461-740). The recombinant vaccinia virus
(W) expressing HCV-la amino acids 134-966 (Sc59 E12C/B) was generated by
methods previously described (Choo et al., Proc. Natl. Acad. Sci. USA (1994)
91_: 1294-1298). U96-Nunc Maxisorp plates (Nalgene Nunc International, Rochester,
NY), Goat anti-Mouse IgG-HRP conjugate (Caltag Laboratories, Burlingame, CA),
and TMB Mkrowell Peroxidase Substrate System (Kirkegaard & Perry Laboratories,
Gaitfaersburg, MD) were used for the ELISA.
Porylactide-co-glycolide (RG 504, 50:50 lactide:glycolide monomer ratio)
was obtained from Boehringer Ingelhoim, USA. CTAB was obtained from Sigma
Chemical Co., St Louis, U.S.A. and was used as shipped. PLG/CTAB
microparticles were prepared using a solvent evaporation technique essentially as
described previously (Singh et al., Proc. Natl. Acad. Set. USA (2000) 97:811-816;
Briones et al., Pharm. Res. (2001) 18:709-712). The HCV E1E2 plasmid was
adsorbed onto the microparticles by incubating 100 mg of microparticles with a 200
ug/ml solution of DNA in IX TE buffer under gentle stirring at 4°C for 12 hours. The
microparticles were then separated by centrifugation, followed by h/ophilizatkm. The
amount of adsorbed DNA was determined by hydrolysis of the PLG microparticles.
The size distribution of the microparticles was determined using a particle size
analyzer (Malvern Instruments, Malvern, U.K.). The zeta potential was measured on
a DELSA 440 SX Zetasizer (Coulter Corp. Miami, FL).
EXAMPLE 1
Immunization of Mice Using E1E2 DNA Adsorbed to Cationic Microparticles
Three studies on mice were conducted to determine the immunogenicity of
E1E2809 plasmid DNA adsorbed to cationic microparticles. In the first study, groups
of 10 female CB6F1 mice age 6-8 weeks and weighing about 20-25 g were
immunized with E1E2M9 plasmid DNA or PLG/CTAB/ ElE2go9DNA (10 and 100 ug)
at days 0 and 28. The formulations were injected in saline by the TA route in the two
hind legs (50 ul per site) of each animal. Mice were bled on day 42 through the retro-
orbital plexus and the sera were separated. HCV E1E2- specific serum IgG titers
were quantified by ELISA.
In the second study, immunization with 1 and 10 ug of PLG/CTAB/
E1E2809DNA was compared to immunization with 2 |ig of recombinant ElE2go9
protein in MF59 at 0 and 28 days, in groups of 10 mice each. An additional group of
mice was immunized with 10 ug of B1B2m9 plasmid DNA for comparison and seta
was separated for assay on day 42.
In the third mice study, immune responses elicited by ElE2go9 plasmid DNA,
PLG/CTAB/ E1B2m9DNA and DNA prime/protein boost were compared. The initial
immunizations were done with B1B2m» plasmid DNA (10 ug), PLG/CTAB/
ElE2go9DNA (10 fig) or 5 \s% of E1E2«oj protein in MF59. Three groups of 10 mice
each were immunized three times exclusively with PLG/CTAB/ E1E2809DNA,
E1E2«09 plasmid DNA, or E1E2«» protein in MFS9. In addition, two further groups
of mice received two doses of either PLG/CTAB/ ElEZgmDNA or E1E2809 plasmid
DNA (10 |ig), and bom groups were boosted with a third immunization, consisting of
a single dose of E1E2|09 protein (S ug) in MF59. All groups of animals were
immunized on three occasions, separated by four weeks and sera was collected on day
70.
The antibody responses against HCV E1E2 in mice were measured on the sera
collected two weeks after each immunization by ELISA. Microther plates were
coated with 200 ul of the purified HCV B1E2«09 at 0.625 ug/ml overnight at 4 °C.
The coated wells were blocked for 1 hr at 37 °C with 300 ul of 1 % BSA in
phosphate-buffered saline (PBS). The plates were washed five times with a washing
buffer (PBS, 0.3% Tween-20), tapped, and dried. Serum samples and a serum
standard were initially diluted in the blocking buffer and then transferred into coated,
blocked plates in which the samples were serially diluted three-fold with the same
buffer. Plates were washed after 1-hour incubation at 37°C. Horseradish peroxidase
conjugated goat anti-mouse IgG gamma chain specific (Caltag Laboratories, Inc.) was
used to determine the total IgG titer. After the 1-hour incubation at 37°C, plates were
washed to remove unbound antibodies. OPD substrate was used to develop the plates,
and the color reaction was blocked after 30 minutes by the addition of 4N HCL. The
titers of IgG antibodies were expressed as the reciprocal of the sample dilution, in
which the optical density of the diluted sample equaled 0.5 at 492 and 620nm.
In the first study, significantly enhanced serum IgG antibody responses to
E1E2 were induced by adsorbing the ElE28o9 plasmid DNA to PLG/CTAB
microparticles, in comparison to immunization with ElE2go9 plasmid DNA alone at
both doses (10 and 100 u.g of DNA). In addition, it was clear that 10 jig of ElE2g9
plasmid DNA was below the threshold dose needed to induce a detectable response.
In contrast, PLG/CTAB/ ElE2g09DNA induced a potent response at 10 ug (Figure 3).
The second study confirmed the ability of PLG/CTAB/ ElE2go9DNA to
induce a significantly enhanced response over ElE2so9 plasmid DNA alone at 10 \xg,
but also showed mat PLG/CTAB/ErE2gojDNA did not induce a potent response at 1
Ug. In addition, mis study also showed mat PLG/CTAB/ ElE2go9DNA (10 \xg)
induced a comparable response to 2 u.g of ElE2go9 protein adjuvanted with MF59
(Figure 4).
The third study confirmed and extended the observations from the earlier
studies. PLG/CTAB/ ElE2go9DNA was significantly more potent than ElE2go9
plasmid DNA alone at 10 ug after two or three doses, and was comparable to
immunization with 5 \i% ElE2go9 protein in MF59, after two or three doses. In
addition, although three doses of 10 (xg of ElE2go9 plasmid DNA did not induce a
detectable response, two doses of PLG/CTAB/ E1E2809DNA (10 ug) induced a
potent response (Figure 5). Moreover, two doses of PLG/CTAB/ ElEZgwDNA (10
fig ) primed for a potent response following boosting with ElE2go9 protein in MF59,
while ElE2go9 plasmid DNA alone (10 |ig) was less effective as a priming regimen.
Furthermore, three doses of PLG/CTAB/ ElE2go9DNA (10 jig ) was equally potent to
two doses of PLG/CTAB/ ElE2g09DNA (10 ug), followed by a boost with a single
dose of 5 ng ElE2go9 protein in MF59 (Figure 5).
As shown herein, the ElE2so9 plasmid was able to induce detectable titers at a
dose of 100 ug in mice. However, the cationic PLG microparticles with adsorbed
ElE2go9 DNA were remarkably more potent and were comparable to the responses
induced by immunization with recombinant ElE2go9 protein adjuvanted with MF59.
This is in contrast to a previous study using HCV E2 plasmid in mice (Song et al., J.
Virol. (2000) 74:2020-2025). In that study, plasmid DNA even at a high dose (100
fig) was unable to induce detectable antibody responses and a protein booster dose
was required to induce seroconversion. Although the present results are consistent
with previous data on HIV plasmids adsorbed to PLG microparticles (O'Hagan et al,
J. Virol. (2001) 75:9037-9043), the ElE2«o9 antigen expressed from the plasmid used
here is very different from antigens previously evaluated in conjunction with PLG.
The env plasmid previously evaluated (Briones et al., Pharm. Res. (2001) 18:709-712;
O'Hagan et al., J. Virol. (2001) 75:9037-9043) was codon-optimized for high level
expression in mammalian cells, with optimal secretion of antigen (Widera et al., J.
Immunol (2000) 164:4635-4640), while the gag plasmid previously evaluated (Singh
et al, Proc. Natl. Acad. Set USA (2000) 97:811-816; O'Hagan et al., J. Virol. (2001)
75:9037-9043) was also codon-optimizod and is efficiently secreted from cells (Zur
Megede et al., J. Virol. (2000) 74:2628-2635). In contrast, the E1E2809 plasmid used
in the current studies was designed to produce the antigen intracellularly (See, e.g.,
International Publication No. WO 98/50556). Hence, a surprising observation in the
current studies is the ability of the PLG microparticles to induce enhanced antibody
responses to an antigen which is not designed to be secreted from the cells.
In the third mouse study, the ability of ElE2go9plasmid DNA versus
PLG/CTABV ElE2go9DNA to prime for a potent antibody response following a boost
with recombinant ElE2go9 protein in MF59 adjuvant was studied. Although E1E2809
plasmid DNA was able to prime for a boost response by protein, even three doses of
ElE2go9 plasmid DNA (10 ng) alone could not initiate a primary response. In
contrast, two doses of PLG/CTAB/ ElE2sogDNA (10 ug) induced a potent serum
antibody response. In addition, PLG/CTAB/ ElE2go9DNA was also more effective at
priming for a boost response to protein than ElE2go9 plasmid DNA alone.
Furthermore, a very surprising observation was that three doses of PLG/CTAB/
ElE28ogDNA were comparable to two doses, followed by a protein boost On several
previous occasions, DNA has been shown to be ineffective at inducing potent
antibody responses, but the responses have been significantly enhanced by a protein
boost
EXAMPLE 2
Immunization of Rhesus Macaques Using E1E2 DNA Adsorbed
to Canonic Microparticles
Based on the above positive results, the following primate study was
conducted. Groups of three rhesus macaques were immunized with PLG/CTAB/
E1E2m»DNA (lmg), or SO pg of ElE2n» protein in MF59 at weeks 0,4,8 and 24. In
addition, all animals were boosted with 40 jig of ElE2go9 protein in MF59 at week 64
(see, Table 2).
Table 2. Immunization regimen for two groups of three rhesus macaques immunized
with PLG/CTAB/ElE2go9DNA, or El E2«o9 recombinant protein in MFS9.
The antibody responses against HCV E1E2 in rhesus macaques were
measured following the protocol described above. The only difference was mat goat
anti-rhesus (Southern Biotech Association, Inc.) was used as secondary antibody.
Peripheral blood was drawn from the femoral vein while the animals were
under anesthesia. PBMCs were obtained after centrifugation over a Ficoll-Hypaque
gradient and were cultured in 24-well dishes at 5 x 106 cells/well. Of those cells, 1 x
106 were sensitized with 10 uM of a peptide pool (consisting of individual peptides)
for 1 h at 37°C, washed and added to Ibe remaining 4 x 106 untreated PBMCs in 2 ml
of culture medium (RPMI1640,10% heat-inactivated FBS, and 1% antibiotics)
supplemented with 10 ng/ml of EL-7 (R&D Systems, Minneapolis, MN). After 48 h,
5% (final) EL2-contaming supernatant (T-STEM without PHA, Becton Dickinson
Biosciences - Discovery Labware, San Jose, CA) and SO U/ml (final) of rDL-2 were
added to the cultures. Cultures were fed every 3-4 days. After 10 days in culture,
CD8+ T cells were isolated using anti-CD8 Abs bound to magnetic beads (Dynal,
Oslo, Norway) according to the manufacturer's instructions. Purified CD8+ cells
(>93% pure as determined by flow cytometry) were cultured for another 2-3 days
before being assayed for cytotoxic activity. B-LCLs were derived from each animal
using supernatants from the Herpesvirus papio producer cell line S394.
Cytotoxic activity was assessed in a standards 'Cr release assay. Autologous
B-LCLs were incubated with 9.25 rug/ml peptides and 50 mCi slCr for 1.5 hours,
washed three times, and plated into a 96-well plate at 5 x 103 cells/well. The CD8H- T
cells were plated at three effector to target (E:T) cell ratios in duplicate. Effectors and
targets were incubated together for 4 hours in the presence of 3.75 x 10s unlabeled
targets per well that were included to minimize lysis of B-LCLs by H. papio and/or
endogenous foamy virus-specific CTLs. Supernatants (50 ml) were transferred to
Lumaplates (Packard Bioscience, Meriden, CT), and radioactivity was measured with
a Wallac Microbeta 1450 scintillation instrument (Perkin Elmer, Boston, MA).
Percent specific lysis was calculated as 100 x [(mean experimental release - mean
spontaneous release) / (mean maximal release - mean spontaneous release)]. CTL
responses were scored as positive when percent specific lysis at the two highest E:T
cell ratios was greater than or equal to the percent lysis of control targets plus 10
percent.
All three rhesus immunized with E1E28W protein in MF59 showed serum IgG
responses two weeks after the second immunization, which were boosted with a third
immunization. Two of the three rhesus immunized with PLG/CTAB/ElE2go9DNA
responded two weeks after the second immunization, and all three animals responded
following a third immunization. Therefore, seroconversion was achieved in all three
rhesus immunized with PLG/CTAB/ E1E2809DNA following a third dose. There was
no evidence of boosting for the two responding animals for the third dose, although
boosting was seen following the fourth dose of PLG/CTAB/ ElE2go9DNA in all
animals (Table 3). This suggested that die third dose of DNA was spaced too close to
the second to achieve effective boosting. There was a much greater delay between the
third and fourth doses, and boosting was achieved following the fourth dose.
Nevertheless, the levels of IgG induced by PLG/CTAB/ ElE^DNA were generally
lower than the responses induced by E1E2«09 protein in MF59 after each
immunization. However, a single dose of E1E2»09 protein induced excellent boosting
in rhesus previously immunized with PLG/CTAB/ ElE2*o9DNA, while a dose of
protein given to the animals previously immunized four times with protein did not
induce a similar level of boosting. Hence, following five immunizations, comparable
serum antibody responses were achieved in both groups of animals which were
immunized with protein alone in MF59, or immunized with PLG/CTAB/ElE2go9DNA
followed by a single booster dose of ElE2go9 protein in MF59.
Two weeks after the fourth immunization with PLG/CTAB/El&mDNA,
CTL responses from PBMC's were evaluated in all animals. One animal (BB227) out
of the three immunized with PLG/CTAB/ElE2go9DNA showed a peptide-specific
CTL response (Table 4). This animal (BB227) was the weakest responder for
antibodies and only seroconverted weakly following the third dose of
PLG/CTAB/ElE2go9DNA.
To summarize, PLG/CTAB/ElB2go9DNA microparticles induced
seroconversion in 3/3 animals, following three immunizations, and responses were
boosted after a fourth dose. Although there was little boosting of the response to
DNA following the third immunization, the third dose did induce seroconversion in
the one remaining animal which had not yet responded. Although, the serum IgG
responses induced with PLG/CTAB/ElE2go9DNA were significantly less than the
responses induced by the recombinant ElE2go9 protein in MF59, given the previous
poor efficacy of DNA vaccines for the induction of antibody responses in primates
even following large doses on multiple occasions (Gurunathan et al., Ann. Rev.
Immunol. (2000) .18:927-974), me ability of PLG/CTAB/ElE2go9DNA to induce
seroconversion in rhesus macaques is both striking and encouraging.
Although PLG/CTAB/E1E2m»DNA alone was not capable of inducing
comparable serum IgG responses to immunization with ElE2go9 protein in MF59, a
single booster dose of ElE2go9 protein significantly enhanced the antibody responses
in the PLG/CTAB/E1 EZswDNA-immunizod rhesus. Following a single booster dose
with recombinant E1B2m» protein in MF59, me PLG/CTAB/ElE2go9DNA group had
comparable serum IgG titers to the rhesus which had been immunized exclusively
with E1E2«>9 protein in MF59 on five occasions. Since ElE2w>9 is produced as an
intracellular antigenic complex (Heile et al., J. Virol (2000) 74:6885), it is difficult to
manufacture as a recombinant protein at the levels required for a universal HCV
vaccine. Therefore, me ability of PLG/CTAB/BlE2g0 response mat can be boosted with a single dose of E1E2 protein in MF59 provides a
protein dose-sparing option for vaccine development In addition, DNA vaccines can
prime CTL responses which may be important in the protective immune response
against HCV. Generally, protein based vaccines have been meffective for the
induction of CTL responses in non-human primates and humans (Singh and O'Hagan,
Nat. Biotechnol. (1999) 17:1075-1081). In one of the mree rhesus macaques
immunized with PLG/CTAB/ElE2go9DNA, a CTL response was detected following
the fourth immunization. Although CTL was not evaluated in the El E2so»/MF59
immunized animals, the inventors herein have sufficient experience with this adjuvant
to be confident that a CTL response would not have been induced.
EXAMPLE 3
Immunization of Chimpanzees Using E1E2 PNA Adsorbed
to Cationic Microparticles
Groups of chimpanzees were immunized in each thigh as shown in Tables 5
and 6, with 3mg (per Hugh) of a mixture of plasmids as follows:
PLG/CTAB/B1E2«09DNA, PLG/CTAB/HCV NS34a, PLG/CTAB/HCV NS4aNS4b
and PLG/CTAB/HCV NS5. Control animals were not given a vaccine. At month 6,
chimps were challenged intravenously with 100 CID of HCV-H strain.
As shown in the tables, PLG DNA primed anti-ElE2 antibodies.
Additionally, following challenge, the vaccinated animals became viremic but 4/5 of
i'
the animals that were admmistered PLG/CTAB/E1E2m»DNA eventually recovered
and did not progress to the carrier state which in humans is accompanied with the
major pathogenic effects of HCV. In contrast, out of a total of 14 controls challenged
with HCV-H, only 6714 were able to clear the viral infection. These data demonstrate
mat E1E2 DNA, adsorbed to cationic microparticles, exhibits a prophylactic effect
Moreover, following challenge, there was evidence of a more rapid influx of
HCV-specific T cells into the livers of the animals administered
PLG/CTAB/ElE2go9DNA versus the controls, thus further demonstrating the
effectiveness of E1E2 DNA adsorbed to cationic microparticles.
Thus, ElE2$o9 DNA compositions and methods of using the same are
described. Although preferred embodiments of the subject invention have been
described in some detail, it is understood mat obvious variations can be made without
departing from the spirit and the scope of the invention as defined by the claims
herein.
WE CLAIM;
1. A composition consisting essentially of a pharmaceutically
acceptable excipient and a polynucleotide adsorbed to a cationic
micro particle, wherein said polynucleotide comprises a coding
sequence that encodes a hepatitis C virus (HCV) immunogen
operably linked to control elements that direct the transcription
and translation of said coding sequence in vivo, and further
wherein the HCV immunogen is an immunogenic HCV E1E2
complex with a contiguous sequence of amino acids having a at
least 80% sequence identity to the contiguous sequence of
amino acids depicted at positions 192-809 of figures 2A-2C,
with the proviso that said polynucleotide does not encode an
HCV immunogen other than the HCV El E2 complex.
2. The composition as claimed in claim 1, wherein the HCV E1E2
complex consists of the sequence of amino acids depicted at
positions 192-809 of Figures 2A-2C.
3. The composition as claimed in claim 1 or 2, wherein the
cationic microparticle is formed from a polymer selected from
the group consisting of a poly (a-hydroxy acid), a polyhydroxy
butyric acid, a polycaprolactone, a polyorthoester, and a
polyanliydride.
4. The composition as claimed in any one of claims 1 to 3, wherein
the cationic microparticle is formed form a poly (a-hydroxy acid)
selected from the group consisting of poly (L-lactide), poly (D,L-
lactide) and poly (D, L-lactide-co-glycolide).
5. The composition as claimed in any one of claims 1 to 4, wherein
the cationic microparticle is formed from poly (D, L-lactide-co-
glycolide).
6. A composition consisting essentially of:
(a) a pharmaceutically acceptable excipient; and
(b) a polynucleotide adsorbed to a cationic microparticle formed
from poly (D, L-lactide-co-glycolide), wherein said
polynucleotide comprises a coding sequence that encodes a
hepatitis C virus (HCV) immunogen operably linked to
control elements that direct the transcription and translation
of said coding sequence in vivo, and further wherein the HCV
immunogen is an HCV E1E2 complex consisting of the
sequence of amino acids depicted at positions 192-809 of
Figures 2A-2C, with the proviso that said polynucleotide
does not encode an HCV immunogen other than the HCV
E1E2 complex.
7.. A medicament comprising a composition as claimed in any
one of claims 1 to 6 and a second composition comprising a
therapeutically effective amount of an immunogenic HCV
polypeptide and a pharmaceutical^ acceptable excipient.
8. The medicament as claimed in claim 7 wherein the second
composition comprises a therapeutically effective amount
of an immunogenic HCV polypeptide and a pharmaceutical^
acceptable excipient and wherein the immunogenic HCV
polypeptide is an immunogenic HCV E1E2 complex with a
contiguous sequence of amino acids having at least 80%
sequence identity to the contiguous sequence of amino acids
depicted at positions 192-809 of Figures 2A-2C.
9. The medicament as claimed in claim 7 or 8 wherein the second
composition comprises a therapeutically effective amount of an
immunogenic HCV polypeptide and a pharmaceutically
acceptable excipient and wherein the immunogenic HCV
polypeptide is an immunogenic HCV E1E2 complex having the
contiguous sequence of amino acids depicted at positions 192-
809 of Figures 2A-2C.
10. The medicament as claimed any one of claims 7 to 9 wherein
the second composition comprises an adjuvant.
11. The medicament as claimed in claim 10, wherein the adjuvant
is a submicron oil-in-water emulsion capable of enhancing an
immune response to the immunogenic HCV polypeptide and
comprising:
(i) a metabolizable oil, wherein the oil is present in an
amount of 1% to 12% of the total volume; and
(ii) an emulsifying agent, wherein the emulsifying agent is
present in an amount of 0.01% to 1% by weight (w/v) and
comprises polyoxyethylene sorbitan mono-,di-, or triester
and/or a sorbitan mono-, di-, or triester, and wherein the
oil and the emulsifying agent are present in the form of an
oil-in-water emulsion having oil droplets substantially all
of which are about 100 nm to less than 1 micron in
diameter.
oil-in-water emulsion comprises 4-5% (w/v) squalene, 0.25-
1.0% (w/v) polyoxyelthylenesorbitan monooleate, and/or 0.25-
1.0% sorbitan trioleate, and optionally, N-acetylmuramyl-L-
alanyl-D-isogluatminyl-L-alanine-2(r-2'-dipalmitoyl-sn-glycero-
3- Kydroxy-phosphoryloxy)-ethylamine(MTP-PE).
13. The medicament as claimed in claim 11 or 12, wherein the
submicron oil-in -water emulsion consists essentially of about
5% by volume of squalene; and one or more emulsifying agents
selected from the group consisting of polyoxyelthylenesorbitan
monooleast and sorbitan trioleate, wherein the total amount Qf
emulsifying agent (s) present is about 1% by weight (w/v).
14. The medicament as claimed in claim 13, wherein the one or
more emulsifying agents are polyoxyelthylenesorbitan
monooleate and sorbitan trioleate and the total amount of
polyoxyelthylenesorbitan monooleate and sorbitan trioleate
present is about 1% by weight (w/v).
15. The medicament as claimed in one of claims 7 to 14, wherein
the second composition comprises a CpG oligonucleotide.
The medicament as claimed in any one of claims 7 to 15
wherein the composition as claimed in any one of claims 1 to 6
and the second composition are packaged for separate
administration
17. The medicament as claimed in any one of claims 7 to 16
wherein the composition as claimed in any one of claims 1 to 6
and the second composition are packaged for administration of
the second composition subsequent to administration of the
composition as claimed in any one of claims 1 to 6.
18. The composition as claimed in any one of claims 1 to 6 or the
medicament as claimed in any one of claims 7 to 17 for use in
the prophylaxis or therapy of HCV infection.
19. The composition as claimed in any one of claims 1 to 6 or the
medicament as claimed in any one of claims 7 to 17 for use as a
medicament for the prophylaxis or therapy of HCV infection.
20. A medicament ro»r the prophylaxis or therapy of HCV infection,
said medicament comprising:
(a) a therapeutically effective amount of a first composition
consisting essentially of a polynucleotide adsorbed to a
cationic microparticle formed from poly (D, L-lactide-co-
glycolide), wherein said polynucleotide comprises a coding
sequence that encodes a hepatitis C virus (HCV)
immunogen operably linked to control elements that direct
the transcription and translation of said coding sequence
in vivo, and further wherein the HCV immunogen is an HCV
E1E2 complex consisting of the sequence of amino acids
depicted at positions 192-809 of Figures 2A-2C, with the
proviso that said polynucleotide does not encode an HCV
immunogen other than the HCV E1E2 complex, and wherein
said HCV E1E2 complex is capable of expression in vivo; and
(b) a therapeutically effective amount of a second composition
comprising:
(i) an immunogenic HCV E1E2 complex consisting of the
sequence of amino acids depicted at positions 192-809
of Figures 2A-2C;
(ii) an adjuvant; and
(iii) a pharmaceutically acceptable excipient capable of
eliciting an immune response in a subject.
21. The medicament as claimed in claim 20, wherein the adjuvant
is a submicron oil-in-water emulsion capable of enhancing an
immune response to the immunogenic HCV polypeptide and
comprising:
(i) a metabolizable oil, wherein the oil is present in an amount
of 1% to 12% of the total volume; and
(ii) an emulsifying agent, wherein the emulsifying agent is
present in an amount of 0.01% to 1% by weight (w/v) and
comprises polyoxyethylenesorbitan mono-,di-, or triester and/or
a sorbitan mono-, di-, or triester, and wherein the oil and the
emulsifying agent are present in the form of an oil-in-water
emulsion having oil droplets substantially all of which are about
100 nm to less than 1 micron in diameter.
22. The medicament as claimed in claim 21, wherein the
submicron oil-in-water emulsion comprises 4-5% (w/v)
squalene, 0.25-1.0% (w/v) polyoxyelthylenesorbitan
monooleate, and/or 0.25-1.0% sorbitan triocate, and optionally,
N-acetylmuramyl-L-alanyl-D-isogluatminyl-L-alanine-2( 1 '-2'-
dipalmitoyl-sn-glycero-3-^Sydroxy-phosphoryloxy)-
ethylamine(MTP-PE).
23. The medicament as claimed in claim 21 or 22, wherein the
submicron oil-in -water emulsion consists essentially of about
5% by volume of squalene; and one or more emulsifying agent
selected from the group consisting of polyoxyelthylenesorbitan
monooleast and sorbitan trioleate, wherein the total amount of
emulsifying agent(s) present is about 1% by weight (w/v).
24. The medicament as claimed in claim 23, wherein the one or
more emulsifying agents are polyoxyelthylenesorbitan
monooleate and sorbitan trioleate and the total amount of
polyoxyelthylenesorbitan monooleate and sorbitan trioleate
present is about 1% by weight (w/v).
25. The medicament as claimed in one of claims 20 to 24, wherein
die second composition comprises a CpG oligonucleotide.
26. A method of making a composition comprising combining a
pharmaceutically acceptable excipient with a polynucleotide
adsorbed to a cationic microparticle, wherein said
polynucleotide comprises a coding sequence that encodes a
hepatitis C virus (HCV) immunogen operably linked to control
elements that direct the transcription and translation of said
coding sequence in vivo, and further wherein the HCV
immunogen is an immungenic HCV E1E2 complex with a
continuous sequence of amino acids having at least 80%
sequence identity to the contiguous sequence of amino acids
depicted at positions 192-809 of Figures 2A-2C, with the
proviso that said polynucleotide does not encode an HCV
immunogen other than the HCV E1E2 complex.
27. The composition or medicament as claimed in any of claims 1 to
19 or the medicament as claimed in any one of claims 20 to 25
substantially as described herein with reference to any example
hereof.
28. The method as claimed in claim 26 substantially as described
herein with reference to any example hereof.

A composition consisting essentially of a pharmaceutically acceptable
excipient and a polynucleotide adsorbed to a cationic microparticle,
wherein said polynucleotide comprises a coding sequence that
encodes a hepatitis C virus (HCV) immunogen operably linked to
control elements that direct the transcription and translation of said
coding sequence in vivo, and further wherein the HCV immunogen is
an immunogenic HCV E1E2 complex with a contiguous sequence of
amino acids having a at least 80% sequence identity to the contiguous
sequence of amino acids depicted at positions 192-809 of figures 2A-
2C, with the proviso that said polynucleotide does not encode an HCV
immunogen other than the HCV El E2 complex.

Documents:

2347-kolnp-2005-abstract.pdf

2347-kolnp-2005-assignment.pdf

2347-kolnp-2005-claims.pdf

2347-kolnp-2005-correspondence.pdf

2347-kolnp-2005-description (complete).pdf

2347-kolnp-2005-drawings.pdf

2347-kolnp-2005-examination report.pdf

2347-kolnp-2005-form 1.pdf

2347-kolnp-2005-form 18.pdf

2347-kolnp-2005-form 2.pdf

2347-kolnp-2005-form 26.pdf

2347-kolnp-2005-form 3.pdf

2347-kolnp-2005-form 5.pdf

2347-KOLNP-2005-FORM-27.pdf

2347-kolnp-2005-granted-abstract.pdf

2347-kolnp-2005-granted-assignment.pdf

2347-kolnp-2005-granted-claims.pdf

2347-kolnp-2005-granted-description (complete).pdf

2347-kolnp-2005-granted-drawings.pdf

2347-kolnp-2005-granted-examination report.pdf

2347-kolnp-2005-granted-form 1.pdf

2347-kolnp-2005-granted-form 18.pdf

2347-kolnp-2005-granted-form 2.pdf

2347-kolnp-2005-granted-form 26.pdf

2347-kolnp-2005-granted-form 3.pdf

2347-kolnp-2005-granted-form 5.pdf

2347-kolnp-2005-granted-reply to examination report.pdf

2347-kolnp-2005-granted-specification.pdf

2347-kolnp-2005-reply to examination report.pdf

2347-kolnp-2005-specification.pdf


Patent Number 238719
Indian Patent Application Number 2347/KOLNP/2005
PG Journal Number 08/2010
Publication Date 19-Feb-2010
Grant Date 18-Feb-2010
Date of Filing 23-Nov-2005
Name of Patentee CHIRON CORPORATION
Applicant Address 4560 HORTON STREET, EMERYVILLE, CA
Inventors:
# Inventor's Name Inventor's Address
1 SINGH MANMOHAN 4560 HORTON STREET, EMERYVILLE, CA-94608
2 O'HAGAN DEREK 4560 HORTON STREET, EMERYVILLE, CA-94608
3 HOUGHTON MICHAEL 4560 HORTON STREET, EMERYVILLE, CA-94608
PCT International Classification Number A61K
PCT International Application Number PCT/US2004/012510
PCT International Filing date 2004-04-23
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/465,841 2003-04-25 U.S.A.