Title of Invention

A METHOD OF IDENTIFYING MOLECULE WHICH INTERACT WITH KINASE PROTEINS AND A PROTEIN MODULATOR ADDUCT

Abstract New methods for the rational identification of molecules capable of interacting with specific naturally occurring proteins are provided, in order to yield new pharmacologically important compounds and treatment modalities. Broadly, the method comprises the steps of identifying a switch control ligand forming a part of a particular protein of interest, and also identifying a complemental switch control pocket forming a part of the protein and which interacts with said switch control ligand. The ligand interacts in vivo with the pocket to regulate the conformation and biological activity of the protein such that the protein assumes a first conformation and a first biological activity upon the ligand-pocket interaction, and assumes a second, different conformation and biological activity in the absence of the ligand-pocket interaction. Next, respective samples of said protein in the first and second conformations are provided, and these are screened against one or more candidate molecules by contacting the molecules and the samples. Thereupon, small molecules which bind with the protein at the region of the pocket may be identified. Novel protein-modulator adducts and methods of altering protein activity are also provided.
Full Text

Documents:

1427-CHENP-2005 CLAIMS.pdf

1427-CHENP-2005 CORRESPONDENCE OTHERS.pdf

1427-CHENP-2005 CORRESPONDENCE PO.pdf

1427-CHENP-2005 DESCRIPTION (COMPLETE).pdf

1427-CHENP-2005 DRAWINGS.pdf

1427-CHENP-2005 FORM-1.pdf

1427-CHENP-2005 FORM-18.pdf

1427-CHENP-2005 FORM-3.pdf

1427-CHENP-2005 FORM-5.pdf

1427-CHENP-2005 PCT.pdf

1427-CHENP-2005 PETITION.pdf

1427-CHENP-2005 POWER OF ATTORNEY.pdf

1427-CHENP-2005 SEQUENCE LIST.pdf

EXAMINATION REPORT REPLY.PDF


Patent Number 237750
Indian Patent Application Number 1427/CHENP/2005
PG Journal Number 3/2010
Publication Date 15-Jan-2010
Grant Date 06-Jan-2010
Date of Filing 27-Jun-2005
Name of Patentee DECIPHERA PHARMACEUTICALS, LLC
Applicant Address 1505 Wakarusa Drive, Lawrence, Kansas 66047
Inventors:
# Inventor's Name Inventor's Address
1 FLYNN, Daniel, L 4165 Blackjack Oak Drive, Lawrence, KS 66047
2 PETRILLO, Peter, A 19 Finley Street, Arlington, MA 02474
PCT International Classification Number C12Q 1/42
PCT International Application Number PCT/US2003/041450
PCT International Filing date 2003-12-26
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/437,304 2002-12-31 U.S.A.
2 60/437,415 2002-12-31 U.S.A.
3 60/437,487 2002-12-31 U.S.A.
4 10/746,545 2003-12-24 U.S.A.
5 60/437,403 2002-12-31 U.S.A.