Title of Invention

A STABLE CHLOROPLAST TRANSFORMATION AND EXPRESSION VECTOR

Abstract A stable chloroplast transformation and expression vector which is capable of introducing multiple genes into a selected plant by a single integration event, said vector comprising as operably linked components, in the 5' to the 3' direction of translation, a promotor operative in said plastids which drives a multi-gene operon codes for a biopharmaceutical protein, said multi-gene operon comprising a first ORF encoding a first protein and a second ORF encoding a second protein, wherein transcription of said multi-gene operon generates a polycistron encoding said first protein and said second protein, wherein at least one of said proteins is a biopharmaceutical protein.
Full Text MULTIPLE GENE EXPRESSION FOR ENGINEERING NOVEL PATHWAYS AND
HYPEREXPRESSION OF FOREIGN PROTEINS IN PLANTS
RELATED APPLICATIONS
This patent application claims the benefit of U.S. Provisional Applications No. 60/185,660,
filed 2/29/00, 60/257,408, filed 12/22/00,60/259,248 filed 12/29/2000 and 60/266,121 filed 2/2/01.
All applications are here incorporated by reference.
STATEMENT REGARDING FEDERALLY SPONSORED FEDERAL RESEARCH
The work of this invention is supported in part by the USDA-NRICGP grants 95-82770,
97-35504 and 98-0185 to Henry Daniell.
FIELD OF INVENTION
This application pertains to the field of genetic engineering of plant genomes, particularly
plastids and to methods of and engineered plants with operons that lead to and result in
overexpression of the gene of interest. This application also pertains to the field of genetic
engineering of algal and bacterial genomes.
DESCRIPTION. OF RELATED ART
Karamata, in U.S. patent No. 4,797,279, proposed the generation of Bacillus thuringiensis
hybrids that have insecticidal properties through conjugation. Conjugation is mediated by a
conjugative plasmid functional in the B.t. kurstaki strain and the B.t. tenebrionis strain. The resulting
hybrid is capable of producing each of the delta-endotoxin crystals typical for a B.t. kurstaki strain
and a B.t. tenebrionis strain.
McBride, in U.S. patent No. 5,545,818 and McBride et. al. (1995), describes a method of
genetically engineering the plastids of a plant or plant cell such they provide increased expression of
the Bacillus thuringiensis insecticidal proteins in the plastids. A construct containing a promoter
functional in plant plastids, a single gene encoding an insecticidal Bacillus thuringiensis toxin, another
DNA sequence encoding a selectable marker, and a transcription termination region capable of
terminating transcription in a plant plastid, is used to affect plant transformation. The transcription
and translation of the B.t. gene product occurs in the plastids.
Daniell et. al., in U. S. patent 5,932,479 (1999), entitled "Genetic engineering of plant
chloroplast," teaches plant cells chloroplast transformed by means of an expression cassette
comprising an exogenous DNA sequence which is stably integrated to the chloroplast genome of the
cell of a target plant. "Stably" integrated DNA sequences are those which are inherited through
genome replication by daughter cells or organisms. This stablility is exhibited by the ability to
establish permanent cell lines, clones, or transgenic plants comprised of a population containing the
exogenous DNA.
Likewise, U.S. patent 5,693,507 (1997) to Daniell and McFadden discloses such stable
integration of the chloroplast by means of an expression cassette which comprises an exogenous
DNA sequence which codes for a desired trait, and the transformed plant.
Daniell, in PCT International Publication WO 99/10513, teaches the composition and use of
universal chloroplast integration and expression by vectors to stably transform and integrate genes
of interest into chloroplast genome of multiple species of plants. This leads to chloroplast expression
of genes of interest. Transformed plants show the highest level of expression. Plants transformed
with insecticidal genes are lethal to insects that are 40,000-fold resistant to Bt. insecticidal proteins.
Significantly, in the prior art inventions use multiple promoters to drive the expression of
multiple genes. Put differently, the inventions of the prior art employ a single promoter to drive a
single monocistron. In contrast, the present invention employs a single promoter to drive
polycistrons, resulting in equal levels of expression of the polycistrons.
All publications and patents are hereby incorporated by reference.
BACKGROUND OF THE INVENTION
In plant and animal cells, nuclear mRNAs are translated monocistronically. This poses a
serious problem when engineering multiple genes in plants. Therefore, in order to express the
polyhydroxybutyrate polymer or Guy"s 13 antibody, single genes were first introduced into individual
transgenic plants, then these plants were back-crossed to reconstitute the entire pathway or the
complete protein. Similarly, in a seven year-long effort, Ye et.al. recently introduced a set of three
genes for a short biosynthetic pathway that resulted in ß-carotene expression in rice. In contrast,
most chloroplast genes of higher plants are co-transcribed. Multiple steps of chloroplast mRNA
processing are involved in the formation of mature mRNAs.
In accordance of the invention expression of polycistrons via the plastid genome, in particular
the chloroplast genome, provides a unique opportunity to express entire pathways in a single
transformation event. Additionally, chloroplast genetic engineering is an environmentally friendly
approach resulting in containment of foreign genes and hyper-expression.
Plant bioremediation (phytoremediation), is the use of plants for in-situ restoration of
contaminated sites. The technique has risen in the last decade as a strong and safe technique to
address with the increasing problems of the pollution of soil and water bodies. In the past other
techniques, such as mechanical and bacterial bioremediation were implemented with little success,
since they were costly and threatened the safety of our environment. Plants, on the other hand, are
advantageous for bioremediation systems since they have a high capacity for adaptation to different
environments and a natural resistance against different toxic pollutants. They are cheap, non-evasive
and help contain disrupted ecosystems. These characteristics make plants an ideal vehicle for
bioremediation.
Mercury is a toxic heavy metal that is commonly released into the environment as a byproduct
of different chemical reactions of modern industries. The present world production of mercury is
about 9000 tons/year (http://www.chem.ualberta.cal.htm). In the environment, mercury is rapidly
methylated by methanogenic bacteria (Ex. Desulfovibrio desulfuricans) producing the 10 fold more
toxic organomercurials (Compeau et. al.) 1985; Gilmour et. al. 1992). Organomercurials are more
toxic due to its increased hydrophobicity, which allows it to cross lipid membranes because it is more
hydrophobic than mercury. Over 90% of the intake of methylmercury is absorbed into blood
compared with only 2% of inorganic mercury (http://www.chem.ualberta.cal.htm) Both
organomercurials and mercury have the tendency to accumulate in the tissue, especially in the
membrane bound organelles. In plants organic mercury crosses the lipid membrane of organelles, for
example chloroplast, where it can poison essential oxidative and photosynthetic electron transport
chains more easily than metallic mercury (Rugh et. al. 1996). In photosynthetic organisms, mercuury
affects the oxygen-evolving complex that is found in the photosystem II and is bound to the thylakoid
membrane (Bernier et al. 1993). Mercury treatment of PSII leads to a strong inhibition of oxygen
evolution by removal of EP33 (one of the proteins of the OEE complex; Bernier et al. 1995).
Mercury reduces the Fm and Fv values due to additional inhibitory sites on the donor side of PSII,
including damage to the light-photochemistry (Rashid et al. 1990). Medical researchers discovered
that high levels of methylmercury cause severe neurological degeneration in birds, cats and humans
(Minamata Disease Research Group, 1968; Harada et. al. 1995). Thus, mercury and
organomercurials are ideal targets for phytoremediation.
In water, mercury pollution also poses a problem. Mercury accumulates in the sediments of
lakes and oceans where methanogenic bacteria live (http://ehpnet.niehs.nih.gov). These bacteria
methylate mercury to produce methylmercury, which is eventually released into water (Harada et
al. 1995). The methylmercury is trapped into the small fish when the water passes through their gills
or they feed on phytoplanktons that carry high concentrations of the pollutant. Predatory fish, as bass
in fresh water and tuna in salt water, live for long periods of time feeding on smaller fish. During
their life span, they can accumulate high levels of methylmercury that can reach 1.0 ppm in normal
water and 30 ppm in areas of high pollution with mercury (http://ehpnet.niehs.nih.gov) Then, humans
and birds feed on contaminated fish and accumulation in their tissue cause severe neurological
damage.
Meagher and colleagues have used a nuclear modified form of the merA and merB genes to
transform plants that are resistant to mercury and organomercurials respectively (Bizily et al. 1999;
Rugh et. al. 1996), U.S. patent 5,965,796 (1999). One of the drawbacks of nuclear genetic
engineerig is that it requires several back crosses to create the complete pathway that detoxifies
mercury and organomercurials (Bizily et al. 2000). This results in variation in expression levels
among different transgenic lines and tolerance to different concentrations of organomercurials, only
in low levels of tolerance (10 µM) (Bizily et al. 2000). Another concern of the use of nuclear
transformed plants in-situ is the escape of the foreign genes via pollen (Daniell 1999; Bogorad, 2000).
The present invention provides a transgenic plant bioremediation system for soil as well as
a transgenic algae/bacteria bioremediation system for water.
Non-obviousness of expression of operons via the chloroplast genome
Despite the potential advantages of chloroplasts for foreign gene expression, it was not
obvious that multiple genes expressed by a single promoter in chloroplasts would be expressed in this
organelle in a coordinated manner. Polycistrons have been observed in chloroplasts in the past but
processing RNA sequences present in between individual transcripts, proteins or enzymes involved
in processing or cofactors necessary for processing of polycistrons have not yet been characterized.
Therefore, it was not obvious to one skilled in the art that multiple foreign gene transcripts would be
properly processed and translated when expressed from a heterologous promoter.
Prior to this patent application there were no published reports of expression of multiple genes
in chloroplasts and there were valid reasons to suggest that it would be problematic. Indeed, despite
several reports of foreign gene expression via the chloroplast genome, no one ever attempted expression
of a bacterial operon via the chloroplast genome because of inadequate understanding of processing of
polycistrons within plastids. All foreign genes engineered via the plastid genome have been driven by
individual promoters and 3" regulatory sequences. It was not known whether 3" terminators and
regulatory sequences were necessary for individual genes of the foreign operon. It is generally believed
that the proteins or enzymes involved in processing may be under the control of the nuclear genome. It
was also believed that there may be several environmental factors involved in processing polycistrons,
including light.
While chloroplast ribosome binding sites have been characterized, it was not obvious that
ribosome binding sites or untranslated regions upstream of bacterial genes would function in plastids.
Also, it was not anticipated that a chaperonin present in a bacterial cell would function within
chloroplasts and help fold the foreign protein or interfere with folding of other chloroplast proteins. It
was certainly unanticipated that it was possible to create cuboidal crystals within chloroplasts duplicating
the functions of a bacterium during sporulation or duplicate bioremediation pathways within plastids.
There was no certainty that the enzymes of the pathway or proteins of the operon would be expressed
in a coordinated manner.
Indeed, the prior art suggested that there might have been unforeseen deleterious effects of high-
level expression of several foreign proteins within chloroplasts on plant growth or development that were
not apparent from the experiences with other transgenes. The pH and oxidation state of the chloroplast
differs from that of bacterial cells in ways that might inhibit or prevent functions of proteins or enzymes.
Because the results of this invention contradicted those teachings of the prior art, this invention was
characterized as breakthrough in plant biotechnology and featured on the cover of Nature Biotechnology
(the most prestigious biotechnology journal in the world) in January 2000. Scientists around the world
have written reviews subsequent to that publication appreciating this invention. Engineering multiple
genes in transgenic plants via the nuclear genome is not only extremely time consuming (taking several
years to accomplish) but is riddled with problems of position effect, gene silencing etc. Therefore, this
accomplishment was characterized as the holy-grail of plant biotechnology.
SUMMARY OF THE INVENTION
By this invention, plastid expression constructs are provided which are useful for genetic
engineering of plant cells and which provide for enhanced expression of several foreign proteins in
plastids utilizing a single transformation event. The transformed plastid is preferably a metabolically
active plastid, such as the chloroplasts found in green and non-green plant tissues including leaves and
other parts of the plant. This invention opens the door to engineering novel pathways for metabolic
engineering and gene stacking, or for multi subunit complex proteins requiring stoichiometric and
coordinated expression of multiple genes. The plastid is preferably one which is maintained at a high
copy number in the plant tissue of interest.
The present invention is applicable to all plastids of plants. These include chromoplasts which
are present in the fruits, vegetables and flowers; amyloplasts which are present in tubers like the potato;
proplastids in roots; leucoplasts and etioplasts, both of which are present in non-green parts of plants.
The plastid expression constructs for use in this invention generally include a single plastid
promoter region and multiple genes of interest to be expressed in transformed plastids. The DNA
sequence of interest may contain a number of consecutive encoding regions, to be expressed as an
operon, for example where introduction of a foreign biochemical pathway into plastids is desired for
metabolic engineering or gene stacking. Plastid expression constructs of this invention is linked to a
construct having a DNA sequence encoding a selectable marker which can be expressed in a plant plastid.
In a preferred embodiment, transformation vectors for transfer of the construct into a plant cell
include means for inserting the expression and selection constructs into the plastid genome. This
preferably comprises regions of homology to the target plastid genome which flank the constructs.
The chloroplast vector or constructs of the invention preferably include a universal chloroplast
expression vector which is capable of importing a desired trait to a target plant species. Such a vector
is competent for stably transforming the chloroplast genome of different plant species which comprises
an expression cassette which is described further herein. Such a vector generally includes a plastid
promoter region operative in said plant cells chloroplast, a gene which is linked to a multi-gene operon
which includes an ORF which codes for a putative chaperonin which facilitat es the folding of the protein
to form proteolyrically stable cuboidal crystals. Preferably, one or more DNA sequences of interest to
be expressed in the transformed plastids.
The invention provides also a plastid vector comprising of a DNA construct. The DNA construct
includes a 5" part of a plastid DNA sequence inclusive of a spacer sequence; a promoter that is operative
in the plastid; at least a heterologous DNA sequence encoding multiple peptides of interest; a gene that
confers resistance to a selectable marker; a multi-gene operon; a transcription termination region
functional in the target plant cells; and a 3" part of the plastid DNA sequence inclusive of a spacer
sequence. The DNA construct is flanked by DNA sequences which are homologous to the spacer
sequence of the target plastid genome. The plastid is preferably a chloroplast. The vector preferably
includes a ribosome binding site and a 5" untranslated region (5"UTR). A promoter operative in the green
and non-green plastids is to be used in conjunction with the
The invention provides a promoter that is operative in the green and non-green plastids of the
target plant cells such as the psbA promoter, rbcL promoter, atpP promoter region, accD promoter, and
the 16SrRNA promoter..
The invention provides a gene, which can be a mutant gene, that confers resistance, such as
antibiotic resistance, to a selectable marker like the aadA gene.
The invention provides a cassette which can be modified to include a selectable marker, a gene
encoding the chaperonin and any desired heterologous gene. Such applications will be beneficial for the
high level production in plants of other desired protein products as well
Further, the invention preferably provides a three-gene insecticidal Bacillus thuringiensis (Bt)
operon which shows operon expression and crystal formation via the chloroplast genome. The operon
comprises of three operably linked components which operate in concert as a biosynthetic pathway: a
distal gene which codes for a insecticidal protein and two open reading frames (ORF). The two ORFs
code for at least one molecule of interest and at least one chaperonin to assist in the folding of the
insecticidal protein. The molecule of interest of this operon can be a peptide, an enzyme, a selectable
marker, or a bio-pharmaceutical, including monoclonals.
This invention also provides for other three-gene operons, particularly insecticidal operon or the
Cry2Aa2 operon. This invention also provides for operons of the Cry or Cyt series.
An operon of this invention further provides that the second ORF (ORF2) codes for a putative
chaperonin. A chaperonin is a molecule which facilitates the folding and assembly of proteins to form
functional proteolytically stable cuboidal crystals. The ORF2 is operably linked to a gene encoding the
insecticidal protein. The invention provides a bacterial chaperonin that is capable of facilitating the
folding and assembly of insecticidal proteins.
This invention also provides crystalized insecticidal proteins such as 8-endotoxin proteins, Cry
proteins such as the Cry2Aa2 proteins, or Cyt proteins.
In accordance of the invention, the introduction blocks of foreign genes in a single operon would
avoid complications inherent in nuclear transformation such as position effect and gene silencing in
putting one gene at a time into random locations in the nuclear genome. Repeated use of a single
promoter causes gene silencing (De Wilte, C. et. al. 2000). Cloning several genes into a single T-DNA
does not avoid the compounded variable expression problem encountered in nuclear transgenic plants.
This invention shows that a bacterial operon can be expressed in a single integration event. Expression
of multiple genes via a single transformation event opens the possibility of expressing foreign pathways
or pharmaceutical proteins involving multiple genes.
The invention provides for the demonstration of expression of abacterial operon or polycistrons
in transgenic plants and opens the door to engineer novel pathways in plants in a single transformation
event.
The invention provides a single vector or construct (or cassette) which encodes more than one
heterologous protein product. This embodiment of the invention provides that a heterologous DNA
fragment that is introduced into a universal vector encodes more than one gene. In one example shown,
this invention discloses, the DNA encodes an operon of three genes and produces proteins from at least
two genes, one of those genes encode a protein and a chaperone protein. This aspect of the invention
-to co-expressing multiple genes - is beneficial if one skilled in the art desires to introduce a biosynthetic
pathway that comprises multiple steps into plants. For example, a three step synthesis of a desired
compound might require three different enzymes. A single transformation will generate a recombinant
plant possessing all three heterologous enzymes which can function in concert to produce the desired
product.
Thus another embodiment of the invention relates to the maximal production of a heterologous
protein by co-expressing it with another polypeptide that induces crystallization of said protein. This
aspect of the invention provides the yield of heterologous gene expression is greatly enhanced if the
desired protein is in crystal form in the transformed plant. The increased yield is because the crystal form
of the proteins protected them from cellular proteases. This is accomplished by co-expressing the desired
gene with a second gene encoding a chaperonin that directs crystallization.
Also, formation of crystals of foreign proteins opens a simple method of purification via
centrifugation. Plants transformed with the cry2Aa2 operon of the invention show a large accumulation
and improved persistence of the expressed insecticidal protein(s) throughout the life of the plant. This
is most likely because of the folding of the insecticidal protein into cuboidal crystals, thereby protecting
it from proteases. This is an environmentally friendly approach because folded crystals improve the
safety of the Bt transgenic plants. In contrast to currently marketed transgenic plants that contain soluble
CRY proteins, folded protoxin crystals will be processed only by those target insects that have high
alkaline gut environment. In addition, absence of insecticidal protein in transgenic pollen eliminates
toxicity to non-target insects via pollen. Expression of the cry2Aa2 operon in chloroplasts provides a
model system for hyper-expression of foreign proteins in a folded configuration enhancing their stability
and facilitating single step purification. This is the first successful demonstration of expression of a
bacterial operon in transgenic chloroplast plants.
The invention provides a model system for large-scale production of foreign protein within
chloroplasts in the folded configuration enhancing their stability and facilitating single-step purification,
for example, biopharmaceuticals such as human serum albumin (HSA) and insulin.
All known methods of transformation can be used to introduce the vectors of this invention
into target plant plastids including bombardment, PEG Treatment, Agrobacterium, microinjection,
etc.
The invention provides transformed crops, like solanaceous plants (monocotyledonous and
dicotyledonous). Preferably, the plants are edible for mammals, including humans.
The invention provides target Bt transgenic plants which are likely to show a more stable protein
expressed at high levels in the chloroplast throughout the growing season. It should increase toxicity of
Bt transgenic plants to target insects and help eliminate the development of Bt resistance. The invention
provides an example of the cry2Aa2 bacterial operon is expressed in tobacco chloroplasts to test the
resultant transgenic plants for increased expression and improved persistence of the accumulated
insecticidal protein(s).
The invention provides transformed plants including leaves which accumulated a high percent of
total soluble protein (close to 50%) in mature leaves and remain stable even in old bleached leaves.
The invention provides transformed plants which are resistant to difficult-to-control insects, like
cotton boll worm, which were killed 100% after consuming transgenic leaves. The invention also
provides plants which contain insecticidal protein fold into cuboidal crystals. Plants which contain
protoxin crystals, which will be processed only by target insects that have high alkaline gut environment,
which should improve safety of Bt transgenic plants. Also, plants are free of insecticidal proteins in
transgenic pollen, which eliminates toxicity to non-target insects via pollen such as Monarch butterfly
larvae. The invention provides electron microscopic proof of the presence of the cuboidal crystals inside
the chloroplast.
The invention also provides an environment friendly approach to engineering insect resistance
to plants because folded crystal products improve the safety of the Bt transgenic plants which will be
edible consume, mammals, including humans.
In another embodiment of the invention provides heterologous DNA sequences which mediate
resistance to (a) heavy metal in transgenic plants or plant cells which express these coding sequences
encoding metal ion reductasesand (b) organomercurial compounds in transgenic plants or plant cells
which express the coding sequence encoding organomercury lyase. Preferably the coding sequence is that
of merA (which encodes mercuric ion reductase) and merB (which encodes organomercury lyase).
The present invention provides a chloroplast universal vector which contains a Mer operon
containing metal resistance coding sequences operably linked to transcriptional and translational control
sequences which are functional in the chloroplast in target plants. Preferably the coding sequence is that
of merA and merB. Also, the present invention provides transgenic plant cells, plant tissue and plants
whose chloroplast has been modified to contain and express two metal resistance coding sequences
operably linked to transcriptional and translational control sequences which are functional in the
chloroplast of target plants. Preferably the coding sequences are that of merA and merB. Also provided
by the present invention are methods for effecting metal resistance in plants by stably transforming a plant
to contain and express two heterologous DNA sequences encoding metal resistance operably linked to
transcriptional and translational control sequences which are functional in the chloroplasts of target
plants. Preferably the coding sequence is that of merA and merB.
The present invention are methods for effecting metal resistance in plants by stably transforming
a green algae or cyanobacteria to contain and express two heterologous DNA sequences encoding metal
resistance operably linked to transcriptional and translational control sequences which are functional in
the target green algae or cyanobacteria. Preferably the coding sequence is that of merA and merB.
A further object of the invention are transgenic plants, algae and bacteria which contain and
express metal resistance and organomercurial compound resistance coding sequences.
Other embodiments of the invention are described in greater detail hereinafter.
BRIEF DESCRIPTION OF THE ACCOMPAYING DRAWINGS
Figure 1 shows (a) Chloroplast expression vector pLD-BD Cry2Aa2 operon (9.8 kb) with PCR
primer landing sites and expected fragment sizes. PCR analysis of untransformed and putative
chloroplast transformants using two primer sets: (b) IP1M; and (c) 3P3M. Lane 1: lkb ladder; Lane 2:
untransformed; Lanes 3-7: pLD-BD Cry2Aa2 operon putative transformants; Lane 8: pLD-BD
Cry2Aa2operon plasmid DNA.
Figure 2 shows the Southern blot analysis of T0 and T1 generations. A. The 0.81 kb probe
BamH1-Bglll fragment containing the chloroplast flanking sequence. Untransformed plants generate a
4.47 kb fragment. B. Vector map showing Cry2Aa2 operon transformed 32P labeled fragments of 8.42
kb and 1.42 kb. C. Lane 1: 1 kb ladder; Lane 2: untransformed; Lanes 3-7; TO transgenic lines; Lanes
8-9: Tl transgenic lines.
Figure 3 shows the 10% SDS-PAGE gel stained with R-250 Coornassie Blue. Loaded protein
concentrations are provided in parenthesis. Lanes 1: prestained protein standard; Lane 2: partially
purified Cry2Aa2 protein from E. Coli (5 µg); Lane 3: Single Gene derived Cry2Aa2 pellet extract
solubilized in 50mM NaOH (22.4 µg); Lane 4: Single Gene derived Cry2Aa2 supernatant (66.5 µg);
Lane 5: Operon Derived Cry2Aa2 supernatant (58.6 µg); Lane 7: untransformed tobacco pellet extract
solubilized in 50mM NaOH (29.8 µg); Lane 8: untransformed tobacco supernatant (30.4 µg). Colored
compounds observed in the supernatant of transgenic plants interfered with the DC Bio-Rad protein
assays but not in the pellet.
Figure 4 shows the quantification of Single Gene derived Cry2Aa2 and Operon Derived Cry2Aa2
proteins by ELISA as a percentage of total soluble protein in young, mature, and old transgenic leaves.
A: Single Gene derived Cry2Aa2 expression shown as a percentage of total soluble protein. B: Operon
derived Cry2Aa2 expression shown as a percentage of total soluble protein.
Figure 5 shows the insect bioassays of untransformed tobacco leaves (A,D,G), Single Gene
derived Cry2Aa2 transformed leaves (B,E,H) and Operon Derived Cry2 Aa2 transformed leaves (C,F,I).
A, B, C: bioassays with H. virescens; D, E, F: bioassays with H. zea; G, H, I: bioassays with S. exigua.
Figure 6 shows the electron micrographs of Operon Derived Cry2 Aa2 leaf sections in young (A),
mature (B,D) and old, bleached leaf (C). Single Gene derived Cry2Aa2 mature leaf (E), mature
untransformed leaf (F).
Figure 7 shows the phenotypes of untransformed (A) or transformed with the cry2Aa2 gene (B)
or cry2Aa2 operon (C).
Figure 8 shows a pLD-merAB chloroplast vector.
Figure 9 shows transformed E. Coli grown in 100 µm HgCl2. Transformed E. coli cells
containing the vectors pLD-merAB and pLD-MerAB-3"UTR grown in LB at different concentrations
of HgCl2. Plates show transformed cells growing at 100 µM HgCl2. No growth was observed in the
control.
Figure 10 shows chloroplast transgenic plants. A: Transgenic plant shoot induction in RMOP
with 500µg/ml Spec. B: Transgenic plant root induction in MSO with 500 µg/ml Spec. C: Transgenic
plant grown in soil.
Figure 11 shows integration of the mer operon into the chloroplast genome. A: PCR using
specific primers that land in the gene cassette (5P/2M) show a product of 3.8kb size (clones2,4, 5,7,
9, 11). Clones 1 and 3 show no integration of the cassette. Positive control, is plasmid pLD-merAB-
3"UTR. Negative control is untransformed plant DNA. B: PCR using specific primers that land within
the native chloroplast genome (3P/3M), eliminate mutants (clone 3), showing integration of the cassette
into the chloroplast genome (clones: 1, 2, 4, 5, 6, 7,9, 11. 1.6 kb PCR product).
Figure 12 shows the Chlorella vulgaris vector construct.
Figure 13 shows the Synechocystis vector construct.
Figure 14 shows the Lemna vector construct.
Figure 15 shows the Sugarcane vector construct.
Figure 16 shows confirmation of Lemna vector construct.
Figure 17 shows confirmation of Sugarcane vector construct.
Figure 18 shows other vectors suitable for operon expression.
DETAILED DESCRIPTION OF THE INVENTION
This invention is related to transformation of the plastid genome applicable to all plastids of
plants. These include chromoplasts which are present in the fruits, vegetables and flowers;
amyloplasts which are present in tubers like the potato; proplastids in roots; leucoplasts and
etioplasts, both of which are present in non-green parts of plants
The invention provides in one aspect a single vector or construct which encodes more than one
heterologous protein product. The second aspect of the invention relates to the; maximal production of
a heterologous protein by co-expressing it with another polypeptide or a chaperone that induces
crystallization of said protein.
The first aspect of the invention provides that a heterologous DNA fragment that is introduced
into a plastid vector (described below) encodes more than one gene. In one example, the DNA encodes
an operon of three genes and produces proteins from three genes. This aspect of the invention to co-
expressing multiple genes is beneficial if one desires to introduce a biosynthetic pathway into plants that
comprises multiple steps. For example, a three step synthesis of a desired compound might require three
different enzymes. Co-expressing all three enzymes in the chloroplast can be accomplished according
to this invention. Thus, a single transformation will generate a recombinant plant possessing all three
heterologous enzymes which can function in concert to produce the desired product.
The second aspect of the invention is that the yield of heterologous gene expression is greatly
enhanced if the desired protein is in crystal form in the transformed plant, as provided by this invention.
This is accomplished by co-expressing the desired gene with a second gene encoding a chaperone protein
that directs crystallization. Data given in the specification shows almost 100 fold greater amounts of
insecticidal protein can be found in plants co-expressing the chaperone protein versus plants having only
the gene encoding the insecticidal protein. The expression cassette itself can be modified to include a
selectable marker, a gene encoding the chaperone protein and any desired heterologous gene. Such
applications will be beneficial for the high level production in plants of other desired protein products as
well.
A further aspect of the invention describes a plant bioremediation system. A plant bioremediation
system employing chloroplast transformants have a number of advantages. First, plants have the genetic
capacity (using hundreds, even thousands, of genes) to extract at least 16 metal cation and oxyanion
nutrients from the soil and ground water. This capacity can be chemically and genetically manipulated
to extract environmental pollutants. Second, plants have extensive root systems to help in this mining
effort; typical estimates are as high as l00xl06 miles of roots per acre [Dittmer, H. J. (1937) Amer. J.
Botany 24-.417-420]. The root systems of various macrophytes can reach up to 40 feet into the soil, hi
addition, plants are photosynthetic and govern as much as 80% of the available energy at any given time
in most ecosystems. Through photosystem I (a system not found in photosynthetic bacteria), they use
light energy to generate large amounts of reducing power (as NADPH) that can be used to efficiently
reduce metal ions. Plants photosynthetically fix CO2 and reduce it to make their own carbon/energy
source. This reduced carbon energy is used by plant roots to live heterotrophically. This redox power
can also be used to reduce toxic metal ions like Hg(II) [Rugh et al. (1996) supra]. Many plants can
produce large amounts of biomass annually with the potential both to enrich contaminated soil with
carbon and nutrients and/or remove metal ions from the soil. The site of action of mercury within the
chloroplasts, ability to express bacterial operon via the chloroplast genome, and several other
environmental benefits of chloroplast genetic engineering make this an advantageous system for metal
remediation.
An additional benefit of the metal resistant plants is their ability to harvest metals; precious and
semi-precious metals can be reduced and thereby trapped in plant tissues. These metals include can
include gold, silver, platinum, rhenium, copper, palladium, nickel, zinc and cadmium, where the
corresponding metal ions are reduced by the metal resistance gene product in those plants.
In addition, this invention also introduces a novel approach for mercury and organomercurial
bioremediation in water. Two organisms are used as model systems. One is Synechocystis, a
photosynthetic bacterium (Cyanobacterium) that grows in salt and fresh water (in a high temperature
range, from ice to hot springs). The other is Chlorella vulgaris, a green algae that grows in fresh water.
These organisms are transformed with the merA and merB genes (mer operon) to remove mercury and
organomercurials from water. Transformed cells could be applied for sludge treatment and in water
treatment to remove organomercury and mercury form water and sediments before releasing them to the
environment, especially from industrial effluents that generate byproducts with mercury.
"Metal resistance" means that a non-naturally occurring organism is not inhibited by the presence
of at least one of divalent cations of mercury, cadmium, cobalt, trivalent cations of gold, and monovalent
silver ion, at concentrations (levels) at which a naturally occurring (wild-type) counterpart of the non-
naturally occurring organism is inhibited or exhibits symptoms of toxicity. It is not intended that the term
metal resistance refer to resistance to unlimited concentration of metal ions, but rather the term is relative
in that it relies on comparison to the properties of a parental strain.
A "metal resistance coding sequence" is one which encodes a protein capable of mediating
resistance to at least one metal ion, including, but not limited to, divalent cations of mercury, nickel,
cobalt, trivalent cations of gold, and by monovalent cations of silver. Also within the scope of this
definition are mutant sequences which determine proteins capable of mediating resistance to divalent
cations of lead, cadmium and copper.
An "organomercurial resistance coding sequence" is one whose protein product mediates
resistance to such organic mercury compounds as alkylmercurials and certain aromatic mercurials, for
example, mono- or dimethylmercury, typically in conjunction with a metal resistance gene such as merA.
As specifically exemplified herein, the organomercurial resistance gene is the methylmercury lyase gene
(merB) and its gene product confers resistance to organomercurial compounds such as methymercury,
p-chloromercuribenzoate (PCMB) and p-hydroxymercuribenzoate in conjunction with the merA gene
product (mercury ion reductase).
The metal resistance protein (MerA protein, mercuric ion reductase) is exemplified by that from
Tn21, a bacterial mercury resistance transposon originally isolated from the IncFII plasmid NR1. In
addition to reducing mercuric ions, the Tn21 MerA reduces trivalent gold and monovalent silver cations
[Summers and Sugarman (1974) Journal of Bacteriology 119:242-249]. Monovalent silver and certain
divalent metal cations have been shown to be competitive inhibitors of mercuric ion reduction in vitro
[Rinderle et al. (1983) Biochemistry 22:869-876]. MerA mediates resistance to trivalent gold, divalent
cobalt, divalent copper and divalent nickel cations as well as divalent ionic mercury.
It is understood that nucleic acid sequences from nucleotide 14 through nucleotide 1708, or
MerApe 20, MerApe 29, MerApe 38 or MerApe 47 will function as coding sequences synonymous with
the exemplified merApe9 coding sequence. Nucleic acid sequences are synonymous if the amino acid
sequences encoded by those nucleic acid sequences are the same. The degeneracy of the genetic code
is well known to the art; i.e., for many amino acids, there is more than one nucleotide triplet which serves
as the codon for the amino acid; for expression in plant cells or tissue it is desired that codon usage
reflect that of plant genes and that CpG dinucleotides be kept low in frequency in the coding sequence.
It is also well known in the biological arts that certain amino acid substitutions can be made in protein
sequences without affecting the function of the protein. Generally, conservative amino acid substitutions
or substitutions of similar amino acids are tolerated without affecting protein function. Similar amino
acids can be those that are similar in size and/or charge properties, for example, aspartate and glutamate
and isoleucine and valine are both pairs of similar amino acids. Similarity between amino acid pairs has
been assessed in the art in a number of ways. For example, Dayhoff et al. (1978) in Atlas of Protein
Sequence and Structure, Vol. 5, Suppl. 3, pp. 345-352, which is incorporated by reference herein,
provides frequency tables for amino acid substitutions which can be employed as a measure of amino acid
similarity. Dayhoff et al."s frequency tables are based on comparisons of amino acid sequences for
proteins having the same function from a variety of evolutionarily different sources.
The expression of merB in plants confers resistance to and/or the ability to detoxify
organomercurials including, but not limited to, alkylmercury compounds wherein the alkyl group is either
straight chain or branched, alkenyl mercury compounds, allyl mercury, alkynyl mercury compounds,
aromatic mercury compounds, wherein there are from one to about 6 aromatic rings, and other
organomercurials including but not limited to humic acid-containing mercury compounds. The MerB
protein also mediates resistance to and/or detoxifies organo-metals including, but not limited to, organic
lead, organic cadmium and organic arsenic compounds, where those organometals can be alkyl, aklenyl,
alkynyl or aromatic metal compounds.
Coding sequences suitable for expression in a plant are operably linked downstream of a
constitutive or a regulated promoter construct. Transgenic plants can be constructed by use of
chloroplast universal vector containing a 5" a part of a chloroplast spacer sequence, a promoter that is
operative in the chloroplast of the target plant cells, at least two heterologous DNA sequences encoding
merA and merB, a gene that confers resistance to a selectable marker; a transcription termination region
functional in the target plant cells; and a 3" part of the chloroplast spacer sequence. Alternatively, the
vector may not contain a terminator.
The mer operon-expressing plants can be used in the remediation of mercury-contaminated soil
to block the biomagnification of methyl mercury up the food chain. Deep-rooted trees like cottonwood
and sweetgum, which inhabit bottom lands, can be transfomred to express mer A and merB. These
species have roots that grow in the same general area of the sediment as sulfate-reducing bacteria. As
the transgenic plant roots take up methyl mercury, MerB breaks the carbon mercury bond to produce
Hg(II). Hg(II) is a highly reactive metal ion and should end up sequestered in plant tissues bound to
various thiol groups.
Hg(II) produced from the MerB reaction and additional Hg(II) taken up from the environment
through its normal mining of nutrients is reduced to Hg(0) by the MerA reaction. Hg(0) is released
directly from the roots or transpired up the vascular system of the plant, as are waste gasses like CO2
from some plants [Dacey, J.W. (1980) Science 210:1017-1019; Dacey, J.W. (1981) Ecology 62:1137;
Raven et al. (1986) In: Biology of Plants, Worth Publishers, N.Y., p.775]. By lowering the total levels
in the soil, less methyl mercury will be produced by sulfate-reducing bacteria. Using the MerA and MerB
together in transgenic plants at contaminated sites lowers total Hg(II) levels and destroys environmental
methyl mercury, thus preventing a large portion of the methyl mercury from moving through the
environment.
The Hg(0) entering the environment joins the enormous and stable pool of Hg(0) in the
atmosphere (Nriagu (1979) In: The Biogeochemistry of Mercury in the Environment, (New York:
Elsevier) with half life of over one year. Because Hg(0) is not easily returned to earth, this pool is not
thought to contribute less significantly to manmade contamination of the environment. In contrast,
atmospheric Hg(II) species (i.e., mercury released from coal burning or methyl mercury released
naturally) are rapidly returned to earth by rain and dry deposition with a half-life of about 1-2 weeks.
Thus, volatilization of relatively small amounts of Hg(0) with good air circulation effectively removes
mercury from terrestrial and aquatic environments.
Once a transgenic plant population expressing MerA and MerB is established, these plants
efficiently process mercury. Over the subsequent few decades these plants remove or detoxify most
mercury from at a site. Relying only on currently available biological and chemical processing, the efflux
rates of Hg(0) from mercury contaminated sites are extremely slow. At one such government site it is
estimated that only 10 kg of the 80,000 kg present in the soil is released as Hg(0) per year (Lindberg et
al. (1995) Environ. Sci. Tech. 29,126-135). The levels of atmospheric mercury at this and most sites (4-
10 ug/m.sup.3) are 10,000 fold below what the EPA/OSHA recommend as the maximimum allowable
levels (U.S. Public Health Service (1994) Toxicological Profile for Mercury. In: Regulations and
Advisories, U.S. Public Health Service, Washington, D.C., pp. 261 -269). Even if transgenic plants at this
site increased the efflux rate of metallic mercury 200 times, the level of atmospheric mercury would still
be 50 fold below these allowable levels. The transgenic plants of the present invention allow the efficient
removal of toxic metal compounds such as methyl mercury and ionic mercury from soil, sediment, and
aquatic environments, thus meeting a longfelt need for efficient bioremediation of metal and organometal
contaminated sites.
The Operons of the Vector
The cry2Aa2 Operon. The preferred embodiment of the invention is the use of Bacillus thuringiensis
(Bt) cry2Aa2 operon as a model system to demonstrate operon expression and crystal formation via the
chloroplast genome of tobacco. This operon contains three open reading frames (ORFs). Cry2Aa2 is
the distal gene of this operon. The ORF immediately upstream of cry2Aa2 codes for a putative
chaperonin that facilitates the folding of cry2Aa2 (and other selected target proteins) to form
proteolytically stable cuboidal crystals. Because CRY protein levels decrease in plant tissues late in the
growing season or under physiological stress, a more stable protein expressed at high levels in the
chloroplast throughout the growing season should increase toxicity of Bt transgenic plants to target
insects and help eliminate the development of Bt resistance. The function of the third ORF is not yet
known. The invention comprises the operon with the third gene and also with the operon without the
third gene.
The mer Operon. Another embodiment of the invention uses the mer Operon. The genes for mercury
resistance are known as Mer genes, they are found in operons of bacterial pasmids; different genes
constitute operons, but the two most important are: the merA that codes for the mercuric ion reductase
and the merB that codes for the organomercurial lyases (Foster, 1983; Summers et al. 1978, 1986). Mer
A is a 1.7kb gene that needs NADPH as a co-factor to reduce mercury to a volatile, non-reactive and
less toxic form of mercury (HgO) (Begley et al. 1986). Mer B is a 638bp gene that undergoes the
protonolysis of organomercurials by removing the organic group and releasing elemental mercury, which
is detoxified by merA (Jackson et al. 1982). A polycistron containing both genes allows effective
degradation of mercury and organomercurials
Alternative Operons
Other Cry or Cyt operons may be used in this invention. Any operon which comprises at least
one of the 133 genes shown in the article MMBR, September 1998, pages 805-873, Vol 62, No. 4,
Revision of the Nomenclature for the BT Insecticidal Crystal Proteins by Crickmon et al., the genes of
which codes for the corresponding BT protein; and the chaperonin which facilitates protein folding can
be used. Likewise, any operon which comprises at least one of the toxins enumerated in Table 15.1 or
at least one of the of Molecular Biotechnology by Glick and Pasternak can be used. Similarly, any
operon which comprises a gene which codes for a delta-endotoxin and the chaperonin which facilitates
protein folding can be used. In addition, any operon which comprises at least a plasmid identified in
Table 13.1 of the of Molecular Biotechnology by Glick and Pasternak can be used.
The Chaperonins
Chaperonins are a class of a protein referred to as chaperones which has been shown to consist
of helper proteins in chain folding and assembly with the cells (Gierasch and King, 1990). They
facilitate the folding and assembly of newly synthesized polypeptide chains into functional three-
dimensional structures by preventing off-pathway reactions during folding that lead to aggregation
(Agashe VR et. al. 2000). Chaperonins provide a sequestered environment in which folding can proceed
unimpaired by intermolecular interactions between non-native polypeptides (Agashe VR et. al. 2000).
Those skilled in the art will be familiar with the E. Coli chaperonins: groEL and groES (Viitanen PV et.
al. 1995), (Gierasch and King, 1990). Plant chaperonins chaperonin-60 and chaperonin-10, which are
homologous of gro-EL and gro-ES, respectively. Homologous of the E. Coli groEL and groES continue
to be identified. For instance, a stable complex of the chaperonins has been isolated and crystallized from
the extremely thermophilic bacterium Thermus thermophilus (Lissin NM et. al. 1992). Likewise, plant
chaperonins - located both in plastids and the cytosol, continue to be identified (Baneyx F. et. al., 1995;
Viitanen PV et. al., 1995; Burt WJ et. al. 1994, Grellet F. et. al. 1993; Bertsch U et. al., 1992). These
articles are hereby incorporated in their entirety by reference.
The preferred embodiment of this invention use of those bacterial chaperonins that are capable
of facilitating the crystallization of the Bt endotoxin polypeptides by means of the UV Ct vector and in
the transformed plants.
The Vectors
This invention contemplates the use of vectors which are capable of stably transforming the
chloroplast genome. Such vectors include chloroplast expression vectors such as pUC,
pBlueScript, pGEM, and all others identified by Daniell in US patents number 5,693,507 and
5,932,479. These publications and patents are herein incorporated by reference to the same extent as
if each individual publication or patent was specifically and individually indicated to be incorporated
by reference.
Universal Vector. A preferred embodiment of this invention utilizes a universal integration and
expression vector competent for stably transforming the chloroplast genome of different plant species
(Universal Vector). The universal vector and its construction have been described by the earlier
Publication No. WO99/10513, International publication date: 4 March 1990, which is herein incorporated
in its entirety.
The 4.0 kb cry2Aa2 operon was inserted into the universal chloroplast expression vector pLD
CtV2 (5.8 kb) to form the final E. coli and tobacco shuttle vector pLD-BD Cry2Aa2 operon (9.8 kb)
(Fig. 1 A). This vector could be used to transform chloroplast genomes of several plant species because
the flanking sequences are highly conserved among higher plants. This vector contains the 16S rRNA
promoter (Prrn) driving the aadA gene (aminoglycoside 3"- adenylyltransferase) for spectinomycin
selection and the three genes of the cry2Aa2 operon. The terminator is the psbA 3" region from the
tobacco chloroplast genome from a gene coding for the photosystem II reaction center component. The
16S rRNA promoter is one of the strong chloroplast promoters recognized by both nuclear and plastid
encoded RNA polymerases in tobacco and the psbA 3" region stabilizes the transcript of foreign genes.
This construct integrates both genes into the spacer region between the chloroplast transfer RNA genes
coding for isoleucine and alanine within the inverted repeat (IR) region of the chloroplast genome by
homologous recombination. The integration into these transcribed spacer regions allow the gene to be
inserted without interfering with gene coding regions. Also, each genome will contain two gene copies
due to integration into the two inverted repeat regions resulting in a higher copy number (7,000-8,000
copies per cell) and higher levels of expression. However, the two genes may also be integrated outside
of the IR region resulting in a lower copy number. Chloroplast transgenic plants were obtained as
described previously by Daniell (1993, 1997).
Mer operon vectors with and without terminator: In order to understand the role of 3"UTRs
in chloroplast foreign gene expression (in mRNA stability and transcription termination), chloroplast
vectors with and without 3" UTRs were made. The PCR products, merA and merB were cloned
independently into the pCR2.1 vector (In Vitrogen). Then, the orientation of the merB gene integration
was checked. Once the correct orientation was found, the vector TA-merB was cut with a Clal/EcoRV.
MerA was cut with Clal and EcoRV, and the fragment (merA) was isolated by gel electrophoresis.
Then, the merB and merA genes were ligated. After the ligation, both genes (merB and merA) in-frame
were ready for insertion into the pLD vector. After cutting pLD vector with PstI to linearize the vector
and to remove the terminator, the merB-merA cassette extracted from the TA-vector was ligated into
the pLD vector (Fig. 8). The final step was to check for correct orientation. Thus the pLD-rnerAB
vector lacking 3" UTR was constructed.
To make the pLD-merA.B-3"UTR, specific set of primers were used to amplify the whole cassette
from the TA-merAB vector. The 5" primer was designed with an EcoRV site and the 3" primer with a
Xbal site. These restriction sites allowed the integration into the pLD vector only in the right orientation.
Chloroplast integration of foreign genes
Foreign gene integration into the chloroplast genome was determined by PCR screening of
chloroplast transformants (Fig. 1 A,B,C). Primers were designed to eliminate spectinomycin mutants and
nuclear integration. The first primer set, 1P1M, lands one primer (1P) on the 3" end of the 16s rRNA
flanking sequence and another primer (1M) on aadA (Fig. 1A). This is to distinguish between
spectinomycin mutants and true spectinomycin transformants. A 1.6 kb fragment is seen in true
transformants (Fig. 1B, lanes 3,5,6,7). Lane 4 shows a spectinomycin mutant with no PCR product.
Untransformed tobacco DNA (lane 2) expectedly shows no product, while pLD-BD cry2Aa2 operon
plasmid DNA in lane 8 produced the 1.6 kb fragment. The second primer set, 3P3M, lands one primer
(3P) on the native chloroplast genome adjacent to the point of integration, and another primer (3M) on
the aadA gene (Fig. 1 A). This primer set generated a 1.65 kb PCR product in chloroplast transformants
(Fig. 1C, lanes 3,5,6,7). Untransformed tobacco DNA (lane 2) showed no PCR product, and pLD-BD
cry2Aa2 operon plasmid DNA in lane 8 also showed no PCR product because 3P lands on native
chloroplast DNA. Lane 4 was negative for chloroplast integration and again proving this transformant
to be a spectinomycin mutant.
Southern blot analysis was done to further demonstrate site-specific chloroplast integration of the
4.0 kb cry2Aa2 operon and to determine heteroplasmy or homoplasmy (Fig. 2). Bglll digested DNA
from transformed plants produce 8.42 kb and 1.4 kb fragments (Fig. 2B) when probed with the 0.81 kb
probe (Fig. 2A) that hybridizes to the trn\ and trnA flanking sequences. Transgenic plant DNA (T0 and
T1) produced the 8.42 kb and 1.4 kb fragments (Fig. 2C, lanes 3-9). A 4.47 kb fragment (Fig. 2A) is
seen in untransformed plant DNA (Fig. 2C lane 2). T0 plant DNA also shows this native untransformed
4.47 kb fragment (Fig. 2C, lanes 3-7), thereby showing heteroplasmy in the T0 generation. This 4.47 kb
native band is absent from the T1 generation (Fig. 2C, lanes 8-9), thus indicating homoplasmy. If only
a fraction of the genomes were transformed, the gene copy number should be less than 8,000 per cell.
Confirmation of homoplasmy in T1 transgenic lines indicates that the Cry2Aa2 operon gene copy number
could be as many as 7000-8,000 per cell.
CRY2Aa2 protein expression and quantification: Expression profile of the operon derived (OD)
Cry2Aa2 and single gene derived (SG) Cry2Aa21 is shown on a Coomassie stained SDS-PAGE gel (Fig.
3). The primary goal of this experiment is to investigate the location of the operon derived Cry2Aa2
protein (the pellet or supernatant) and correlate with cuboidal crystals observed in electron micrographs
(see Figure 6). Lane 2 contains partially purified 65 KD Cry2Aa2 from E. coli. Because crystalline
Cry2Aa2 inclusion bodies are solubilized at high alkaline pH, the 50mM NaOH solubilized pellet was
analyzed from each plant sample after centrifugation for 20 min at 13,000g (lanes 3,5,7). Results show
that OD Cry2Aa2 expression forms crystalline inclusion bodies because the protein is found mostly in
the pellet after centrifugation (lanes 5-6). In contrast, expression of SG Cry2Aa2 is observed in both the
pellet and the supernatant (lanes 3-4). No Cry2Aa2 expression was seen in untransformed tobacco in
either the supernatant or the pellet (lanes 7, 8).
Cry 2Aa2 polypeptides (Fig. 3, lanes 3,5) were scanned using Storm 840 Gel Scanner and Image
Quant Software (Molecular Dynamics). The operon-derived expression results only in a 2.5 fold more
accumulation of Cry2Aa2 than that of single gene derived cry2Aa2 in the pellet fraction; this does not
correlate with more than 100 fold difference observed in ELISA (Figure 4). The reason for this
discrepancy is the extreme difference in solubilization between SG Cry2Aa2 derived amorphous inclusion
bodies and the OD Cry2Aa2 derived cuboidal crystals, as reported previously.
Despite the large difference in protein accumulation (as shown by ELISA and electron micrographs, Figs.
4,6), the concentration of solubilized protein loaded in the pellet fraction was similar in SG Cry2Aa2 and
OD Cry2Aa2 (Figure 3, lanes 3,5). Attempts to completely solubilize crystalline inclusion bodies for
SDS PAGE analysis were not successful because higher pH interfered with gel electrophoresis and
repeated dilution decreased protein concentration below detectable levels in Coornassie stained gels.
However, for quantification using ELISA it was possible to completely solubilize crystalline
inclusion bodies under optimal conditions and dilute the protein to fit within the linear range of the
Cry2aA2 standard. Therefore, protein expression levels of SG Cry2Aa2 and OD Cry2Aa2 were
quantified using ELISA (Fig. 4). Additionally, CRY protein accumulation in young, mature, and old
transgenic leaves derived from a single gene or operon was compared to investigate their stability over
time. Young, mature, and old leaves expressed SG Cry2Aa2 at 0.014%, 0.36%, and 0.03% respectively
(Fig. 4A). Cry2Aa2 levels peaked in the mature leaf (0.36%) and drastically declined to 0.03% as the
plant senesced. However, young, mature, and old leaves containing OD Cry2Aa2 accumulated at 34.9%,
45.3%, and 46.1 % respectively (Fig. 413). As these transgenic plants aged, OD Cry2Aa2 concentrations
remained stable and did not decline like the SG Cry2Aa2. The presence of the operon-expressed putative
chaperonin should enable the toxin to be folded into stable crystalline structures that are protected from
degradation. Based on quantitative expression, the cry2Aa2 operon derived expression levels are
comparable to that of the RuBisCo, the most abundant protein on earth that compromises up to 65% of
leaf soluble protein.
Insect Bioassays: Five-day-old tobacco budworm (Heliothis virescens), ten day old cotton bollworm
(Helicoverpa zed) and beet armyworm (Spodoptera exigua) larvae consumed the entire leaf after 24 hrs
on the untransformed control (Figs. 5A, D, G). H. virescens feeding on SG Cry2Aa2 leaves died after
5 days (Fig. 5B) while insects died after 3 days on OD Cry2Aa2 leaves (Fig. 5C). For SG Cry2Aa2, H.
zea consumed considerable leaf material after 24 hr, stopped feeding after three days and died after five
days (Fig.5E). H. zea consumed very little OD Cry2Aa2 material after 24 hours, stopped feeding, and
died after five days (Fig. 5F). S. exigua feeding on SG Cry2Aa2 (Fig. 5H) or OD Cry2Aa2 (Fig. 51)
were lethargic after 24 hours and died after 48 hours. Milkweed leaves dusted with OD Cry2A2
transgenic pollen were not toxic to Monarch butterfly larvae (data not shown) confirming earlier
observations that foreign proteins are not present in tobacco pollen.
Electron Microscopic Analysis: Untransformed and transgenic leaf sections were immunogold-labeled
with a Cry2A polyclonal antibody (Fig. 6). Figures A-C show developmental OD Cry2Aa2 in
chloroplasts in young, mature, and old leaves, respectively. In a young green OD Cry2Aa2 transgenic
leaf (Fig. 6A), labeled Cry2Aa2 occupies a significant amount of the chloroplast, but no crystalline
structures are observed. In a mature green OD Cry2Aa2 transgenic leaf (Fig. 6B), labeled Cry2Aa2
occupies a larger amount of the chloroplast than the younger leaf, resulting in crystals. Theses cuboidal
crystals are essentially identical to those expressed in wild-type Cry2Aa2 crystals, or recombinantly in
Bt or E coli. In an old bleached OD Cry2Aa2 transgenic leaf (Fig. 6C), labeled Cry2Aa2 maintains the
crystalline structure and occupies the highest volume of the chloroplast observed, despite being bleached
and senescent. These findings correlate with OD Cry2Aa2 ELISA results. In young developing leaves,
OD Cry2Aa2 begins accumulation (34.9%), folds Cry2Aa2 into a cuboidal configuration in mature leaves
occupying more cell volume (45.3%), and maintains this cuboidal structure and volume in old leaves
(46.1 %). Essentially, as the transgenic OD Cry2Aa2 plant ages, OD Cry2Aa2 is accumulated, folded
and maintained.
Figure 6D is a mature green OD Cry2Aa2 transgenic leaf showing crystal formation with no
immunogold label. This probably occurs because as the Cry2Aa2 is folded by the putative chaperonin,
epitopes are concealed thereby decreasing labeling. Crystal formation in Fig. 6D would cause the OD
Cry2Aa2 to pellet after centrifugation as seen in SDS-PAGE Fig. 3 (lane 5). In EM analysis of mature
leaves expressing SG Cry2Aa2 (Fig. 6E), protein aggregation is observed, although no crystalline folding
is seen. Cry2Aa2 immunogold labeling occurs in an area of much lower density than is seen in OD
Cry2Aa2 transgenic plants suggesting lower expression. These results also correlate with ELISA (0.3 6%
in SG Cry2Aa2 in mature leaves). There is no localized antibody observed in untransformed tobacco
(Fig. 6F).
Transgenic phenotypes: Phenotypes of OD Cry2Aa2 transgenic plants are not morphologically different
from SG Cry2Aa2 transgenic plants (Fig. 7). Therefore, higher levels of expression and accumulation
of CRY proteins did not visibly impact their phenotype. Both transgenic plants flowered and set seeds.
Characterization of OD Cry2Aa2 T1 transgenic plants for stable integration and transmission of foreign
genes has been shown earlier (Fig. 2).
Possibility of Gene Pyramiding
This invention enables expression of polycistrons in the chloroplast genome. In contrast to prior
efforts in engineering gene expression in transgenic plants, the present invention allows for this
achievement in a single transformation event that is environmentally safe. The invention thus opens the
possibility for gene pyramiding: the insertion of multiple insecticidal genes. The invention contemplates
operons which include not only Bacillus thuingiensis (B.t.) insecticidal toxin genes, but also non-B.t.
insecticidal toxin genes such as cholesteral oxidase, alpha-amylase inhibitors, protease inhibitors, the
cowpea trypsin inhibitors, and the potato proteinase inhibitor II. Inclusion of multiple heterologous
insecticidal toxin genes retards the ability of insects to develop resistance to bio-pesticides.
Expression of Biological Pathways
Further, this invention provides a method of engineering biological pathways into the chloroplast
genome in a single transformation event that is environmentally safe. Because gene expression is
controlled by one promoter, DNA sequences encoding the different genes necessary in a pathway can
be co-expressed to the same levels. Once expressed, the genes of the pathway can act in concert. Gene
expression can result in synthesis of enzymes that confer desired traits such as degradation of metal ions,
herbicides, pesticides, solvents, toulene, napthalene, and other xenobiotics. An example is the chloroplast
transformation of plant chloroplasts with the Mer operon leading to the biodegradation of mercury and
organomercurials. Other pathways include the pigment biosynthesis pathway, biosynthetic pathways for
enzymes that are could confer desired traits such as degradation of xenobiotic compounds noted above,
pathways for amino acids such as the lysine biosynthetic pathway, and pathways for the synthesis of
vitamins, carbohydrates, fatty acids, biopolymers and polyesters. Further examples are provided in
chapters 12 and 13 of Molecular Biotechnology by Glick and Pasternak, which is herein incorporated
by reference. Other xenobiotics which can be degraded using the system of this invention include those
given in U.S. patent 4,259,444 to Chakrabarty which is herein incorporated by reference.
Expression of pathways can result in the production of compounds such as ammo acids, fatty
acids, carbohydrates, polymers, vitamins, antibiotics and dyes.
Efficient Expression of Bio-pharmaceuticals
The ability to express polycistrons also opens up the possibility of efficiently expressing bio-
pharmaceuticals such as monoclonal antibodies. Those skilled in the art will know the four DNA
sequences encoding proteins necessary to compose the molecule. Those skilled in the art will also know
that these proteins should be produced in equal amounts (the same stoichiometric ratio). The PCT
application entitled "Production of Antibodies in Transgenic Plastids," filed on 2/28.2001 by Daniell, is
hereby incorporated by reference to offer examples of such proteins. This invention allows for the
coordinated expression of these sequences because they are driven by the same promoter. This method
avoids the problems of the prior art; namely the pitfalls of nuclear transformation such as the positional
effect and gene silencing.
Application to Other Plants.
This invention provides any higher plants, such as monocotyledonous and dicotyledonous plant
species. The plants that may be transformed via the universal vector with an antibiotic selectable marker
may be solanacious plants or plants that grow underground. Most importantly, this invention is
applicable to the major economically important crops such as maize, rice, soybean, wheat, and cotton.
A non-exclusive list of examples of higher plants which may be so transformed include cereals such as
barley, corn, oat, rice, and wheat; melons such as cucumber, muskmelon, and watermelon; legumes such
as bean, cowpea, pea, peanut; oil crops such as canola and soybean; solanaceous plants such as tobacco;
tuber crops such as potato and sweet potato; and vegetables like tomato, pepper and radish; fruits such
as pear, grape, peach, plum, banana, apple and strawberry; fiber crops like the Gossypium genus such
as cotton, flax and hemp; and other plants such as beet, cotton, coffee, radish, commercial flowing plants,
such as carnation and roses; grasses, such as sugar cane or turfgrass; evergreen trees such as fir, spruce,
and pine, and deciduous trees, such as maple and oak.
The invention now being generally described, it will be more readily understood by reference to
the following examples which are included for purposes of illustration only and are not intended to limit
the present invention.
In the experimental disclosure which follows, all temperatures are given in degrees centigrade
(degree), weight are given in grams (g), milligram (mg) or micrograms (.mu.g), concentrations are given
as molar (M), millimolar (mM) or micromolar (.mu.M) and all volumes are given in liters (1), milliliters
(ml) or microliters (.mu.l), unless otherwise indicated.
The invention is exemplified in the following non-limiting examples which are only for illustrative
purposes and are not intended to limit the scope of the invention..
EXAMPLE 1
Bombardment and selection of transgenic plants: Tobacco plants were grown aseptically under
fluorescent lights in the laboratory. Seeds were germinated on MSO medium at 27°C with photoperiods
of 16 hour light and 8 hour dark. Microcarriers coated with pLD-BD Cry2Aa2 operon DNA was used
to bombard sterile leaves using the Bio-Rad PDS-1000/He biolistic device as described by Darnell (1997).
Bombarded leaves were subjected to two rounds of selection on RMOP medium containing 500 µg/ml
of spectinomycin to regenerate transformants.
PCR Analysis: DNA was extracted from leaves using the Q1AGEN DNeasy Plant Mini Kit. PCR was
done using the Perkin Elmer Gene Amp PCR System 2400. All PCR reactions were performed using
the Qiagen Taq DNA Polymerase Kit. Primer sequences used were: IP (5"-
ACAATGTAGCCGTACTGGA AGGTGCG GGTG-3"), 1M (5"-CGCGCTT AGC
TGGATAACGCCACGGAA-3"), 3P(5"-AAAA CCCGTCCTCA GTTCGGATTGC-3"), and 3M (5"-
CCGCGTTGTTTCATCAA GCCTTACG-3"). Samples were run for 30 cycles with the following
sequence: 94°C for 1 minute, 70°C for 1.5 minutes, and 72°C for 3 minutes. PCR products were
separated on 0.8% agarose gels.
Southern Blot Analysis: DNA from transformed and untransformed plants was digested with BgIII and
transferred to a nylon membrane by capillary action. The 0.81 kb probe was generated by digesting pLD-
CtV2 vector DNA with BamHl/BgIII and labeled with 32P using the ProbeQuant™ G-50 Micro
Columns (Amersham). Labeled probe was hybridized with the nylon membrane using the Stratagene
QUICK-HYB hybridization solution and protocol.
SDS-PAGE Analysis: Transgenic and untransformed leaf material (600 mg) was ground to a powder
in liquid nitrogen. Protein extraction buffer from the Cry2Aa2 plate kit from Envirologix (Portland,
Maine) used for quantification was added to the powder and further grinding was performed. The
mixture was centrifuged at 4°C at 13,000g for 20 minutes. The supernatant was removed, boiled in
sample buffer, and loaded on a 10% SDS-PAGE gel. The pellet was resuspended in 50mM NaOH and
centrifuged at 4°C at 5000g for 5 minutes to pellet cell debris. The supernatant was removed, boiled in
sample buffer, and loaded on a 10% SDS-PAGE gel at 200V for 4 hours. Gels were stained for 2 hours
with R-250 Coomassie Blue and destained overnight in 40% methanol and 10% acetic acid. The DC
protein assay by Bio-Rad was used to determine total soluble and pellet protein concentration as followed
by protocol.
ELISA: A Cry2Aa2 plate kit from Envirologix was used. Leaves expressing the SG Cry2Aa2, the OD
Cry2Aa2, and untransformed tobacco were quantified and compared. Approximately 20 mg of leaf was
ground in 100 µl of 50mM NaOH to solubilize CRY proteins. Transgenic leaf extracts were diluted to
fit in the linear range of the provided Cry2aA2 standard. The µ Quant microtiter plate reader from Bio-
Tek read the plate at 450 nanometers (nm). A 1ppm Cry2Aa2 standard was supplied by the kit and was
used in the linear range between 200-1000 ng for quantification. Color development is proportional to
Cry2Aa2 concentration in the sample extract. The DC protein assay by Bio-Rad was used to determine
total soluble protein concentration as followed by protocol.
Insect Bioassays: Leaf disc bioassays were conducted on ca. 2 cm2 excised leaf material, and placed on
distilled water-soaked cardboard lids in 50 x 12 mm plastic petri dishes. Insects used were susceptible
H. virescens (YDK) obtained from Fred Gould, North Carolina State University, H. zea obtained from
the USDA AIRS facility in Tifton, GA and S. exigua from the lab of William Moar. Insects were tested
as five day or ten day old. All larvae were reared on typical lepidopteran artificial diet prior to use. Two
insects were assayed per leaf sample, except H. zea in which only 1 insect was added per leaf sample due
to the cannibalistic nature of the insect (2 leaf samples for H. zea). All leaf samples for each replicate
were from the same leaf. Two samples were evaluated per treatment, and observed daily for mortality
and leaf damage for 5 days. Treatments were replicated three times.
Transmission Electron Microscopy and Immunogold Labeling: Immunogold labeled electron
microscopy was performed as described by A. J. Vrekleij et. al.. Sections were first incubated with 0.05M
glycine in PBS buffer (l0mM phosphate buffer, 150mM NaCl pH 7.4) for 15 minutes to inactivate
residual aldehyde groups. The grids were then blocked by placing them onto drops of PBS with 5% BS A
and 0.1 % CWFS gelatin supplemented with 5% normal serum for 30 minutes, washed on drops of
incubation buffer 3 times for 5 min each, and then incubated for 45 min with the polyclonal Cry2Aa2 to
detect tobacco expression (diluted 1:10,000 in incubation buffer). To remove unbound primary antibody,
sections were washed on drops of incubation buffer 6X5 min each. Sections were then incubated for
2 hours with a goat anti-rabbit IgG secondary antibody conjugate to 10nm gold diluted 1:100 in
incubation buffer. Sections were subsequently washed 6X5 minutes in incubation buffer, 3X5 min
with PBS, and post-fixed in 2% glutaraldehyde diluted in PBS for 5 min. Following post-fixation,
sections were washed in PBS 3X5 minutes, in distilled water 5X2 min each, and post-stained using
uranylacetate and lead citrate. Sections were then examined in a Zeiss EM 10 transmission electron
microscope at 60kv.
EXAMPLE 2
E. Coli Transformants. Due to the similarity of protein synthetic machinery (Brixey et al. 1997),
expression of all metal resistance conferring chloroplast vectors are first tested in E.coli before their use
in tobacco transformation. The activity of the enzymes, mercury ion reductase (merA) and
organornercurial lyase (merB) are tested by transforming E. coli (XLI-blue) with the recombinant
plasmids and growing them in LB solid medium with HgCl2 (Fig. 9). The cells, control (XLI-bue), pLD-
merAB and pLDmerAB-3"UTR are grown in different concentrations of Hg Cl2. Control cells do not
grow even at concentrations less than 25 µM HgCl2 but the transformed cells grow well even at 100 µM
HgCl2-(Fig. 10). The ability to grow at these high concentrations of mercury in which control is not able
to grow, confirms the functionality of both enzymes. Control and transformed clones are grown in LB
with 500µg/rnl of spectinomycin for 24 hours at 37" C. When OD600 is measured, 1.247 for the clone with
3" UTR, 0.165 for the clone lacking the 3" UTR, and zero absorbance for the control is observed. As
expected the pLD-merAB-3"UTR transformed clone shows a higher growth rate probably caused by the
3" effective termination which allows cells to make more copies of the mer operon transcript that contain
only the aadA, merA and merB genes. In chloroplast genome we expect a minor effect in the
transcription termination efficiency because the terminator of the genes close to the cassette and
downstream can serve as a terminator, once it is integrated in the chloroplast genome by homologous
recombination.
Bombardment and regeneration of chloroplast transgenic plants: Tobacco (Nicotiana tabacum var.
Petit Havana) plants are grown aseptically by germination of seeds on MSO medium (Daniell 1993).
Fully expanded, dark green leaves of about two month old plants are bombarded as described by Daniell
(1997). The plants are maintained under 500µg/ml spectinomycin selection in the three phases; first
selection (RMOP medium), second round of selection (RMOP medium) and third selection MSO
(rooting medium) (Fig. 10). After these selection events, positive transformants are transferred to soil
(Fig 10). The plants are tested for integration of the genes in the chloroplast at first round of selection
and before transplanting them to soil. The use of PCR with specific primers that land in the chloroplast
genome and in the gene cassette allows us to eliminate mutants and show integration of the selectable
marker gene and the mer genes (Fig. 11). After PCR testing, the plants are grown in soil and the seeds
are collected.
Polymerase Chain Reaction: PCR is done using DNA isolated from control and transgenic plants to
distinguish a) true chloroplast transfomants from mutants and b) chloroplast transformants from nuclear
transformants. Primers for testing the presence of the aadA (a gene that confers spectinomycin
resistance) in transgenic plants are landed on the aadA coding sequence and 16S rRNA gene
(primers 1IP&1M). In order to test chloroplast integration of the mer genes, one primer is landed on the
aadA gene while another is landed on the native chloroplast genome (primers 3P&3M). No PCR product
is obtained with nuclear transgenic plants using this set of primers. The primer set (5P & 2M) is used
to test integration of the entire gene cassette without any internal deletion or looping out during
homologous recombination, by landing on the respective recombination sites. This screening is essential
to eliminate mutants and nuclear transformants. In order to conduct PCR analyses in transgenic plants,
total DNA from unbombarded and transgenic plants are isolated as described by Edwards et al. (1991).
Chloroplast transgenic plants containing the mer gene are moved to second round of selection in order
to achieve homoplasmy.
Southern Blot Analysis: Southern blots are done to determine the copy number of the introduced
foreign gene per cell as well as to test homoplasmy. There are several thousand copies of the chloroplast
genome present in each plant cell. Therefore, when foreign genes are inserted into the chloroplast
genome, it is possible that some of the chloroplast genomes have foreign genes integrated while others
remain as the wild type (heteroplasmy). Therefore, in order to ensure that only the transformed genome
exists in cells of transgenic plants (homoplasmy), the selection process is continued. In order to confirm
that the wild type genome does not exist at the end of the selection cycle, total DNA from transgenic
plants is probed with the chloroplast border (flanking) sequences (the trnl-trnA fragment). If wild type
genomes are present (heteroplasmy), the native fragment size will be observed along with transformed
genomes. Presence of a large fragment (due to insertion of foreign genes within the flanking sequences)
and absence of the native small fragment should confirm homoplasmy (Daniell et al.,1998; Kota et al.,
1999; Guda et al., 2000).
The copy number of the integrated gene is determined by establishing homoplasmy for the transgenic
chloroplast genome. Tobacco Chloroplasts contain 5000-10,000 copies of their genoine per cell (Daniell
et al. 1998). If only a fraction of the genomes are actually transformed, the copy number, by default,
must be less than 10,000. By establishing that in the transgenics, the merAB inserted transformed
genome is the only one present, one could establish that the copy number is 5000-10,000 per cell. This
is done by digesting the total DNA with a suitable restriction enzyme and probing with the flanking
sequences that enable homologous recombination into the chloroplast genome. The native fragment
present in the control should be absent in the transgenics. The absence of native fragment proves that
only the transgenic chloroplast genome is present in the cell and there is no native, untransformed,
chloroplast genome, without the mer genes present. This establishes the homoplasmic nature of our
transformants, simultaneously providing us with an estimate of 5000-10,000 copies of the foreign genes
per cell.
Northern Blot Analysis: Northern blots are done to test the efficiency of transcription of the merAB
operon. Total RNA is isolated from 150 mg of frozen leaves by using the "Rneasy Plant Total RNA
Isolation Kit" (QiagenInc.,Chatsworth,CA). RNA(10-40 µg) is denatured by formaldehyde treatment,
separated on a 1.2% agarose gel in the presence of formaldehyde and transferred to a nitrocellulose
membrane (MSI) as described in Sambrook et al. (1989). Probe DNA (merAB gene coding region) is
labeled by the random-primed method (Promega) with 32P-dCTP isotope. The blot is pre-hybridized,
hybridized and washed as described above for southern blot analysis. Transcript levels are quantified by
the Molecular Analyst Program using the GS-700 Imaging Densitometer (Bio-Rad, Hercules, CA).
Plant Bloassays
Germination/Growth Experiments: Seeds of wild-type (Nicotiana tabacum var Petit Havana),
transgenic plant pLD-MerAB, and transgenic plant pLD-MerAB-3"UTR are sterilized, vernalized at 4"
C for at least 24h, and germinated on 1% Phytoagar plates (GIBCO/BRL) made with Murashige and
Skoog (4.3g/liter, GIBCO/BRL) medium containing PMA (phenylmercuric acetate) or mercuric chloride.
Seedlings are grown at 22° C with a 16 h light/8 h dark period.
Mercury Vapor Assays: Elemental mercury is relatively insoluble and volatile and lost quickly from cells
and media. Volatilized Hg° is measured on a Jerome 431 mercury vapor analyzer (Arizona Instrument,
Phoeniz, AZ) (Rugh, C.L. et al., 1996). Approximately 5-10 seedlings (10-14 day old, 10-25 mg total
wet weight) are incubated in 2ml of assay medium (50mm Tris.HCL, pH 6.8/50mM NaCl/25uM HgCl2)
in a l6xl30 mm test tube with a side arm for gas removal. The Hg Cl2 is added to initiate the assay.
The amount of Hg° produced is assayed by bubbling air through the bottom of the sample for 12 sec at
3cm3/sec and measuring the release of Hg°. The time zero assay will be taken immediately after the
seedlings are placed in the medium. The sample is then reassayed every minute for 10 minutes. The
volatilized Hg° is measured by passing the air sample released from the side arm directly over the gold
foil membrane resistor of a Jerome 431 mercury vapor analyzer. The instrument is repeatedly
standardized with known quantities of Hg° (10-200 ng), reduced from HgCl2 with excess SnCl2. The
amount of mercury evolved is normalized by dividing the number of nanograms of Hg° measured by the
number of milligrams of seedling tissue in the assay.
Photosynthetic studies: From transgenic plants and untransformed plants, intact chloroplasts are
isolated for photosynthetic studies. O2 evolution is studied in an oxygen evolution electrode in the
absence or presence of different concentrations of HgCl2 and PMA. Electron transport is studied with
suitable electron donors/acceptors to study photosystem I, II or both. PAGE is used to examine the
composition of PSII complex, especially EP33, after incubation of cells or chloroplasts or thylakoid
membranes with different concentrations of HgC 12 and PMA. In vivo chloroplast fluorescence is studied
to monitor changes in control and transformed cells or chloroplasts to measure Fo, Fm, Fv.
Inheritance of Introduced Foreign Genes: While it is unlikely that introduced DNA would move from
the chloroplast genome to nuclear genome, it is possible that the gene could get integrated in the nuclear
genome during bombardment and remain undetected in Southern analysis. Therefore, in initial tobacco
transformants, some are allowed to self-pollinate, whereas others are used in reciprocal crosses with
control tobacco (transgenics as female accepters and pollen donors; testing for maternal inheritance).
Harvested seeds (Tl) are germinated on media containing spectinomycin. Achievement of homoplasmy
and mode of inheritance is classified by looking at germination results. Homoplasmy is indicated by
totally green seedlings (Daniell et al., 1998) while heteroplasmy is displayed by variegated leaves (lack
of pigmentation, Svab & - Maliga, 1993). Lack of variation in chlorophyll pigmentation among progeny
also underscores the absence of position effect, an artifact of nuclear transformation. Maternal
inheritance is demonstrated by sole transmission of introduced genes via seed generated on transgenic
plants, regardless of pollen source (green seedlings on selective media). When transgenic pollen is used
for pollination of control plants, resultant progeny would not contain resistance to chemical in selective
media (will appear bleached; Svab and Maliga, 1993). Molecular analyses confirms transmission and
expression of introduced genes, and T2 seed are generated from those confirmed plants by the analyses
described above.
EXAMPLE 3
Chlorella vulgaris transformation vector: The region 16S to 23S of the Chlorella vulgaris chloroplast
genome is amplified by PCR using specific primers complementary to rrnl6 and to rrn23. The PCR
product will be cloned into pCR 2.1 vector available from Promega. The PCR product 16S to 23S is
removed from the pCR2.1 vector by a blunt end restriction endonuclease and cloned into the pUC 19 in
which the multiple cloning site has been removed using a blunt end restriction enzyme (Pvull). Then the
cassette containing the promoter, the antibiotic resistance gene and the merAB genes is inserted into the
new vector (Chlorella transformation vector) using a blunt end restriction enzyme (HincII) that is present
in the spacer region between trnA and trnT. The final construct is used for the transformation of
Chlorella vulgaris (Fig. 12).
Bombardment and transformation of Chlorella vulgaris: The biolistic transformation method
(Sanford et al. 1993) is optimized for transformation of Chlorella vulgaris. Chlorella is grown in liquid
heterotrophic medium (5 sporulation agar) at 25° C to late-log phase (~6 x 106 cells/ml). To prepare a
monolayer for bombardment (2x107), cells are collected onto prewetted 45mm GVWP filters (Millipore)
under gentle (30 mBar) vacuum. Gold particles are coated with the transforming plasmid. (Sanford et
al. 1993) The monolayer filters are bombarded. Immediately after bombardment, filters are transferred
to selective solid media containing 500µg/ml spectinomycin and incubated at 22° C under high light.
After approximately 6 weeks, green colonies are picked from a background of bleached cells onto
selective plates and grown for an additional 1-2 weeks. Colonies are harvested and screened for
integration of foreign genes when they reached a diameter of approximately 5mm.
Chlorella vulgaris Bioassays: Growth and colonies formation bioassay are performed as explained in
the plant germination growth experiment; the only change is the use of Chlorella specific media.
Mercury vapor assays: Mercury vapor assays are performed in the way explained for plants above
except changing the growth media specific to Chlorella, including temperature and light intensity.
Photosynthetic studies: Photosynthetic studies are performed in the way explained for plants above
except untransformed and transformed Chlorella cells will be directly used to study the effect of mercury
toxicity.
EXAMPLE 4
Synechocystis transformation vector: The region 16S to 23 S of the Synechocystis genome is amplified
by PCR using specific primers complementary to rrn 116 and to rrn23. The PCR product is cloned into
the pCR 2.1 vector available from Promega. The PCR product 16S to 23S is removed from the pCR2.1
vector by a blunt end restriction endonuclease and cloned into pUC 19 in which the multiple cloning site
has been removed using a blunt end restriction enzyme (Pvull). Then the cassette containing the
promoter, the antibiotic resistance gene and the merAB genes is inserted into the new vector
(Synechocystis transformation vector) using a blunt end restriction enzyme (Hindi) that is present in the
spacer region between trnI and trnA. The final construct will be used for the transformation of
Synechocystis (Fig. 13).
Transformation of Synechocystis: A fresh culture of wild type in BG-11 (heterotrophic medium) plus
glucose is grown to OD730 = 0.5 after 2-3 days of culture. Cells are spun down in sterile 50 ml tubes at
room temperature and resuspended in the original growth medium to OD730= 2.5. Transforming DNA
is added to resuspended cells in sterile glass culture tubes. Tubes are placed in rack in the growth
chamber at 30° C for 6 hours and shaken for 3 hours. Cells (200 µl) are plated on a sterile filter that has
been placed on a BG- 11 plus glucose plate and spread around. After growth for 24 hours and they are
transferred to filters on appropriate medium containing spectinomycin or mercuric chloride.
Synechocystis Bioassays: Growth and colonies formation bioassay are performed as explained in the
plant germination-growth experiment; the only change is the use Synechocystis growth media.
Mercury vapor assays: Mercury vapor assays are performed in the way explained for plants above
except changing the growth media specific to the Synechocystis, including temperature and light intensity.
Photosynthetic studies: Photosynthetic studies are performed in the way explained for plants above
except untransformed and transformed Synechocystis cells are directly used to study the effect of mercury
toxicity.
EXAMPLE 5
Lemna transformation vector: The Lemna chloroplast vector, as shown in Fig. 14, is constructed in
the same way as explained above for tobacco, with the exception that the Lemna chloroplast DNA
flanking sequences are used.
Bombardment and regeneration of transgenic plants: Lemna plants are transformed and regenerated
in the way explained for tobacco in Example 1 above.
Plant Bioassays: Various plant bioassays are performed as explained for tobacco in Example 1 above.
EXAMPLE 6
Sugarcane transformation vector: The Sugarcane chloroplast vector, as shown in Fig. 15, is
constructed in the same way as explained above for tobacco, with the exception that the Sugarcane
chloroplast DNA flanking sequences are used.
Bombardment and regeneration of transgenic plants: Sugarcane plants are transformed and
regenerated in the way explained for tobacco in Example 1 above.
Plant Bioassays: Various plant bioassays are performed as explained for tobacco in Example 1 above.
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WE CLAIM:
1. A stable chloroplast transformation and expression vector which is
capable of introducing multiple genes into a selected plant by a single
integration event, said vector comprising as operably linked components,
in the 5" to the 3" direction of translation, a promoter operative in said
plastids which drives a multi-gene operon codes for a biopharmaceutical
protein, said multi-gene operon comprising a first ORF encoding a first
protein and a second ORF encoding a second protein, wherein
transcription of said multi-gene operon generates a polycistron encoding
said first protein and said second protein, wherein at least one of said
proteins is a biopharmaceutical protein.
2. A vector as claimed in claim 1, wherein an other gene of the operon codes
for a putative chaperonin which facilitates the folding of the protein.
3. A vector as claimed in claim 1, wherein the protein is insulin or human
albumin.
4. A vector as claimed in claim 1, wherein another gene of the operon codes
for another biopharmaceutical protein other than the gene which codes for
the putative chaperonin, which protein is expressed in stoichtmetric ratio.
5. A vector as claimed in claim 3, wherein the genes of the operon, other
than the gene which codes for the putative chaperonin, codes for
biopharmaceutical proteins which are expressed in stoichimetric ratio.
6. A vector as claimed in claims 1, 2 or 3, which comprises collecting the
protein product in a folded configuration, thereby enhancing their stability,
and facilitating single step purification.
7. A vector as claimed in claim 1, wherein the biopharmaceutical protein is a
monoclonal antibody.
8. A vector as claimed in claim 7, wherein the protein is produced in the
same stoichiometric ratio.
9. A vector as claimed in claim 1, wherein said another gene of the operon is
selected from the group of cholesterol oxidase, alpha-amylase inhibitors,
and proteinase inhibitors.
10. The vector as claimed in any one of claims 1-6, 8-9, wherein the promoter
is a one functional in green or non-green plastids.
11. The promoter as claimed in claim 10, wherein said promoter is selected
from the group of psbA, accD, or 16srRNA promoters.
12. A vector as claimed in claim 1, where the protein is human serum albumin.
13. A vector as claimed in claim 1, which further comprises flanking each side
of the expression cassette, flanking DNA sequences which are
homologous to a DNA sequence inclusive of a spacer sequence of the
target chloroplast genome, which sequence is conserved in the
chloroplast genome of different plant species, whereby stable integration
of the heterologous coding sequence into the chioroplast genome of the
target plant is facilitated through homologous recombination of the flanking
sequences with the homologous sequences in the target chloroplast
genome.
14. A stable chloroplast transformation and expression vector substantially as
herein described.
15. A method of transforming a chloroplast of a selected plant species or the
progeny thereof to confer insect resistance and producing on a large-scale
foreign protein substantially as herein described.
16. The method of phytoremediation of mercury and organomercurials in soil
and ground water substantially as herein described.
17. The method of transforming a chloroplast of a selected photosynthetic
organism to confer greater resistance to metal ions substantially as herein
described.
A stable chloroplast transformation and expression vector which is capable of
introducing multiple genes into a selected plant by a single integration event, said
vector comprising as operably linked components, in the 5" to the 3" direction of
translation, a promoter operative in said plastids which drives a multi-gene
operon codes for a biopharmaceutical protein, said multi-gene operon comprising
a first ORF encoding a first protein and a second ORF encoding a second
protein, wherein transcription of said multi-gene operon generates a polycistron
encoding said first protein and said second protein, wherein at least one of said
proteins is a biopharmaceutical protein.

Documents:

in-pct-2002-01086-kol-granted-abstract.pdf

in-pct-2002-01086-kol-granted-assignment.pdf

in-pct-2002-01086-kol-granted-claims.pdf

in-pct-2002-01086-kol-granted-correspondence.pdf

in-pct-2002-01086-kol-granted-description (complete).pdf

in-pct-2002-01086-kol-granted-drawings.pdf

in-pct-2002-01086-kol-granted-form 1.pdf

in-pct-2002-01086-kol-granted-form 18.pdf

in-pct-2002-01086-kol-granted-form 2.pdf

in-pct-2002-01086-kol-granted-form 26.pdf

in-pct-2002-01086-kol-granted-form 3.pdf

in-pct-2002-01086-kol-granted-form 5.pdf

in-pct-2002-01086-kol-granted-letter patent.pdf

in-pct-2002-01086-kol-granted-reply to examination report.pdf

in-pct-2002-01086-kol-granted-sequence listing.pdf

in-pct-2002-01086-kol-granted-specification.pdf


Patent Number 212618
Indian Patent Application Number IN/PCT/2002/01086/KOL
PG Journal Number 49/2007
Publication Date 07-Dec-2007
Grant Date 04-Dec-2007
Date of Filing 22-Aug-2002
Name of Patentee AUBURN UNIVERSITY
Applicant Address 309 SAMFORD HALL, AUBURN UNIVERSITY, AL 36849
Inventors:
# Inventor's Name Inventor's Address
1 DANIELL, HENRY 1255 MARINA POINT, NO.315 CASSELBERRY, FL 32707
2 MOAR, WILLIAM 309 SAMFORD HALL, AUBURN UNIVERSITY, AL 36849
PCT International Classification Number A 01 H 5/02
PCT International Application Number PCT/US01/06276
PCT International Filing date 2001-02-28
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/185,660 2000-02-29 U.S.A.