Title of Invention

VACCINE COMPOSITION

Abstract The invention relates to a vaccine which comprises at least one antigen and a peptide comprising a sequence R¿1?-XZXZ¿N?XZX-R¿2?, whereby N is a whole number between 3 and 7, preferably 5, -X is a positively charged natural and/or non-natural amino acid residue, Z is an amino acid residue selected from the group consisting of L, V, I, F and/or W, and R¿1? and R¿2? are selected independently are from the other from the group consisting of -H, -NH¿2?, -COCH¿3?, -COH, a peptide with up to 20 amino acid residues or a peptide reactive group or a peptide linker with or without a peptide; X-R¿2? may also be an amide, ester or thioester of the C-terminal amino acid residue, as well as the use of said peptide for the preparation of an adjuvant for enhancing the immune response to at least one antigen.
Full Text FORM 2
THE PATENTS ACT 1970
[39 OF 1970]
&
THE PATENTS RULES, 2003
COMPLETE SPECIFICATION
[See Section 10; rule 13]
"VACCINE COMPOSITION"
INTERCELL AG (Formerly known as Intercell Biomedizinische Forschungs- und Entwicklungs AG], of Campus Vienna Biocenter 6, A-1030 Vienna, Austria,

The following specification particularly describes the invention and the manner in which it is to be performed:


The present invention relates to vaccines comprising at least one antigen and an immunostimulating substance.
Host protection from invading pathogens involves cellular and hu-moral effectors and results from the concerted action of both non -adaptive (innate) and adaptive (acquired) immunity. The lat¬ter is based on specific immunological recognition mediated by
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receptors, is a recent acquisition of the immune system, and is
present only in vertebrates. The former evolved before the devel¬opment of adaptive immunity, consisting of a variety of cells and molecules distributed throughout the organism with the task of keeping potential pathogens under control (Soman, H. (2000)), (Zanetti, M. (1997)).
B and T lymphocytes are the mediators of acquired antigen-spe¬cific adaptive immunity, including the development of immunologi¬cal memory, which is the main goal of creating a successful vaccine (Schijns, V. (2000)). Antigen presenting cells (APCs) are highly specialized cells that can process antigens and display their processed fragments on the cell surface together with mole¬cules required for lymphocyte activation. This means that APCs are very important for the initiation of specific immune reac¬tions. The main APCs for T lymphocyte activation are dendritic calls (DCs), macrophages, and B cells, whereas the main APCs for B cells are follicular dendritic cells. In general DCs are the most powerful APCs in terms of initiation of immune responses stimulating quiescent naive and memory B and T lymphocytes.
The natural task of APCs in the periphery (e.g. DCs or Langerhans
cells) is to capture and process antigens, thereby being acti-
vated they start to express lymphocyte co-stimulatory molecules,
migrate to lymphoid organs, secrete cytokines and present anti-
gens to different populations of lymphocytes, initiating antigen-
specific immune responses. They not only activate lymphocytes,
under certain circumstances, they also tolerize T cells to anti-
gens (Banchereau, J. (1998))., "
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Antigen recognition by T lymphocytes is major histocompatibility complex (MHC)-restricted.,A given T lymphocyte will recognize an antigen only when the peptide is bound to a particular MHC mole-cule. In general, T lymphocytes are stimulated only in the pres-ence of self MHC molecules, and antigen is recognized only as peptides bound to self MHC molecules. MHC restriction defines T lymphocyte specifity in terms of the antigen recognized and in terms of the MHC molecule that binds its peptide fragment.
Intracellular and extracellular antigens present quite different challenges to the immune system, both, in terms of recognition and of appropriate response. Presentation of antigens to T cells is mediated by two distinct classes of molecules - MHC class I (MHC-I) and MHC class II (MHC-II), which utilize distinct antigen processing pathways. Mainly one could distinguish between two ma¬jor antigen processing pathways that have evolved. Peptides de¬rived from intracellular antigens are presented to CD8+ T cells by MHC class I molecules, which are expressed on virtually all cells, while extracellular antigen-derived peptides are presented to CD4+ T cells by MHC-H molecules (Monaco, J. (1992); Harding, C. (1995)). However, there are certain exceptions to this dichot-omy. Several studies have shown that peptides generated from en-docytosed particulate or soluble proteins are presented on MHC-I molecules in macrophages as well as in dendritic cells (Harding, C. (1996); Brossart, P. (1997)). Therefore APCs like dendritic cells sitting in the periphery, exerting high potency to capture and process extracellular antigens and presenting them on MHC-I molecules to T lymphocytes are interesting targets in pulsing them extracellularily with antigens in vitro and in vivo.
The important and unique role of APCs, including stimulating ac¬tivity on different types of leukocytes, is reflecting their cen¬tral position as targets for appropriate strategies in developing successful vaccines. Theoretically one way to do so is to enhance or stimulate their natural task, the uptake of antigen(s). Once" pulsed with the appropriate antigens the vaccine is directed against, APCs should start to process the taken.up antigen(s), thereby being activated, expressing lymphocyte co-stimulatory molecules, migrating to lymphoid organs, secreting cytokines and presenting antigens to different populations of lymphocytes

thereby initiating immune responses.

Activated T cells generally secrete a number of effector cyto¬kines in a highly regulated fashion, e.g. interleukin 2 (IL-2), IL-4, IL-5, IL-10 and interferon-y (IFN-y) . The functional detec¬tion, of cytotoxic T lymphocyte responses to specific antigens (e.g. tumor antigens, in general antigens administered in a vac¬cine) is commonly monitored by an ELISpot assay (enzyme-linked immunospot assay), a technique analyzing cytokine production at the single cell level, in the present invention an ELISpot assay for the cellular immunity promoting cytokine IFN-y was used to monitor successful peptide-specific T cell activation.
It has previously been shown that polycations efficiently enhance the.uptake of MHC class I-matched peptides into tumor cells, a peptide or protein pulsing process which was called "TRANSload-ing" (Buschle, M. (1997)). Furthermore, we have shown that poly-cations are able to "TRANSload" peptides or proteins into antigen presenting cells in vivo as well as in vitro (Buschle, M. (1998)). In addition, co-injection of a mixture of poly-L-ar-ginine or poly-L-lysine together with an appropriate peptide as a vaccine protects animals from tumor growth in mouse models (Schmidt, W. (1997)). This chemically defined vaccine is able to induce a high number of antigen/peptide-specific T cells. That was shown to be at least partly attributable to an enhanced up¬take of peptides into APCs mediated by the polycation (Buschle, M. (1998)) indicating that APCs when pulsed in vivo with antigens can induce T cell-mediated immunity to the administered antigen.
As opposed to adaptive immunity, which is characterized by a highly specific but relatively slow response, innate immunity is based on effector mechanisms that are triggered by differences in the structure of microbial components relative to the host. These mechanisms can mount a fairly rapid initial response, which mainly leads to neutralization of the noxious agents. Reactions of innate immunity are the only defense strategy of lower phyla and have been retained in vertebrates as a first line host de¬fense before the adaptive immune system is mobilized.
In higher vertebrates the effector cells of innate immunity are

neutrophils, macrophages, and natural killer cells and probably "also dendritic cells (Mizukawa, N. (1999)), whereas the humoral components in this pathway are the complement cascade and a vari¬ety of different binding proteins (Boman, H. (2000)).
A rapid and effective component of innate immunity is the produc¬tion of a large variety of microbicidal peptides with a length of usually between about 12 and about one hundred amino acid resi¬dues . Several hundred different antimicrobial peptides have been isolated from a variety of organisms, ranging from sponges, in¬sects to animals and humans, which points to a wide-spread dis¬tribution of these molecules. Antimicrobial peptides are also produced by bacteria as antagonistic substances against competing organisms.
in EP 0 905 141 Al a peptide fragment of a limulus anti-LPS fac¬tor (LALF) having antiviral action is disclosed. This LALF pep¬tide does not specifically enhance an immune response but enhances the non-specific defences of mononuclear cells and can also be used in a prophylactic way or further the peptide can also be administered topically to a wound site to stimulate an enhanced wound healing and repair.
Main sources of antimicrobial peptides are granules of .neutro¬phils and epithelial cells lining the respiratory, gastro-intes-tinal and genitourinary tracts. In general they are found at those anatomical sites most exposed to microbial invasion, are secreted into internal body fluids or stored in cytoplasmic gran¬ules of professional phagocytes (neutrophils) (Ganz, T. (1997); Ganz, T. (1998); Ganz, T. (1999); Boman, H. (2000); Gudmundsson, GH. (1999)).
It has been shown previously (Austrian patent application A 1416/2000) that naturally occuring, cathelicidin-derived anti¬microbial peptides or derivatives thereof have an immune response stimulating activity and therefore constitute highly effective adjuvants.
The aim of the present invention is to provide an adjuvant/ "carrier peptide" that is able to strongly enhance the immune re-

sponse to a specific co-administered antigen and therefore con-stitutes a highly effective adjuvant.
This object is solved by a vaccine which comprises at least one antigen and a peptide comprising a sequence R1-XZXZNXZX-R2, whereby
- N is a whole number between 3 and 7, preferably 5,
- X is a positively charged natural and/or non-natural amino acid
residue,
- z is an amino acid residue selected from the group consisting
of L, V, I, F and/or W, and
- R1 and R2 are selected independantly one from the other from the
group consisting of -H, -NH2, -COCH3/ -COH, a peptide with up to 20 amino acid residues or a peptide reactive group or a peptide linker with or without a peptide; X-R2 may also be an amide, ester or thioester of the C-terminal amino acid residue.
Besides naturally occuring antimicrobial peptides, synthetic an¬timicrobial peptides have been produced and investigated. The synthetic antimicrobial peptide KLKLLLLLKLK-NH2 was shown to have significant chemotherapeutic activity in Staphylococcus aureus-infected mice; human neutrophils were activated to produce the superoxide anion (O2-) via cell surface calreticulin. The exact number and position of K and L was found to be critical for the antimicrobial activity of the synthetic peptide (Nakajima, Y. (1997); Cho, J-H. (1999)).
it has now been surprisingly shown within the course of the pres¬ent invention that peptides according to the present invention comprising a sequence R1-XZXZNXZX-R2, whereby
- N is a whole number between 3 and 7, preferably 5,
- X is a positively charged natural and/or non-natural amino acid
residue,
- Z is an amino acid residue selected from the group consisting
of L, v, I, F and/or W, and
- R1 and R2 are selected independantly one from the other from the
group consisting of -H, -NH2, -COCH3, -COH, a peptide with up to 20 amino acid residues or a peptide reactive group or a peptide linker with or without a peptide; X-R2 may also be an
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amide or ester (or even thioester) of the C-terminal amino
acid residue (in the following termed as "peptides A") TRANSload antigenic peptides or proteins into APCs far more efficiently than known adjuvants, including naturally occuring antimicrobial peptides. They further have a strong immune response stimulating activity and therefore constitute highly effective adjuvants.
Preferably, the C-terminus is not modified (COOH or COO"), since this form is even bettet than the amidated form of the peptide.
In the scope of the present invention the sequence may be ami-dated at its carboxy-enfl or carry a further amino acid sequence, however, preferably the carboxy-end is free.
Furthermore, in the scope of the present invention, all the X comprised in the peptides alpha may represent the same amino acid residue. Preferably, however, in one peptide alpha x represents only one specific amino acid residue, e.g. either K or R, etc. The same can be applied with respect to Z: all the Z in the pep¬tides alpha may be one single amino acid species or different amino acid species: e.g. either L or V etc.. This is especially the case for the ZN-portion in the middle of the formula, which may be e.g. L5 or L3 as well as LVIFW, LILFLLIW, WIF, W3L2, and all other combinations of this motiv, being between 3 and 7 amino acids at length, preferably from 4 to 6 amino acid residues, es¬pecially 5 amino acid residues. These residues are also preferred for the R1 and R2 portion (e.g. that more than 50%, preferably more than 80%, especially more than 90% of Ri and/or R2 are L, I, F, V and/or W, if Ri and/or R2 are peptides) . Preferably Ri and R2 are the same, advantageously they are both H (i.e. free amino- or carboxy-termini).
Under the scope of the present invention the term "non-natural" comprises any amino aci Peptide Ri-KLKL5KLK-R2 is specifically preferred, however also Ri-KIKL5KIK-R2, Ri-KVKL5KVK-R2, R1-KFKL5KVK-R2, Ri-KLKL6KLK^R2, Ri-KWKW5KLK-R2, R1-KWKWL3WKWK-R2, R1-KLKL4KLK-R2 or permutations with
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respect to positions of I, F, V, W and L are advantageous.
Of course, the vaccine may comprise two or more antigens depend¬ing on the desired immune response. The antigen(s) may also be modified so as to further enhance the immune response.
Preferably, proteins or peptides derived from viral or bacterial pathogens, from fungi or parasites, as well as tumor antigens (cancer vaccines) or antigens with a putative role in autoimmune disease are used as antigens (including derivatized antigens like glycosylated, lipidated, glycolipidated or hydroxylated anti¬gens) . Furthermore, carbohydrates, lipids or glycolipids may be used as antigens themselves. The derivatization process may in¬clude the purification of a specific protein or peptide from the pathogen, the inactivation of the pathogen as well as the prote¬olytic or chemical derivatization or stabilization of such a pro¬tein or peptide. Alternatively, also the pathogen itself may be used as an antigen. The antigens are preferably peptides or pro¬teins, carbohydrates, lipids, glycolipids or mixtures thereof.
According to a preferred embodiment, T cell epitopes are used as antigens. Alternatively, a combination of T cell epitopes and B cell epitopes may also be preferred.
The antigens to be used in the present compositions are not critical. Also mixtures of different antigens are of course pos¬sible to be used according to the present invention. Preferably, proteins or peptides derived from a viral.or a bacterial pathogen or from fungi or parasites are used as such antigens (including derivatized antigens or glycosylated or lipidated antigens or polysaccharides or lipids). Another preferred source of antigens are tumor antigens. Preferred pathogens are selected from human immunodeficiency virus (HIV), hepatitis A and B viruses, hepati¬tis C virus (HCV), rous sarcoma virus (RSV), Epstein Barr vi¬rus (EBV) influenza virus, Rotavirus, Staphylococcus aureus, Chlamydia pneumonias, Chlamydia trachomatis, Mycobacterium tuber¬culosis, Streptococcus pneumonias, Bacillus anthracis, Vibrio cholerae, Plasmodium sp. (PI. falciparum, Pi. vivax, etc.), As¬pergillus sp. or Candida albicans. Antigens may also be molecules expressed by cancer cells (tumor antigens). The derivation proc-
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ass may include the purification of a specific protein from the pathogen/cancer cells, the inactivation of the pathogen as well as the proteolytic or chemical derivatization or stabilisation of such a protein. In the same way also tumor antigens (cancer vac¬cines) or autoimmune antigens may be used in the pharmaceutical composition according to the present invention. With such compo¬sitions a tumor vaccination or a treatment for autoimmune dis¬eases may be performed.
In the case of peptide antigens the use of peptide mimotopes/ago¬nists /superagonists /antagonists or peptides changed in certain positions without affecting the immunologic properties or non-peptide mimotopes/agonists/superagonists/antagonists is included in the current invention. Peptide antigens may also contain elon¬gations either at the carboxy or at the amino terminus of the peptide antigen facilitating interaction with the polycationic compound(s) or the immunostimulatory compound(s). For the treat¬ment of autoimmune diseases peptide antagonists may be applied.
Antigens may also be derivatized to include molecules enhancing antigen presentation and targeting of antigens to antigen pre¬senting cells.
In one embodiment of the invention the pharmaceutical composition serves to confer tolerance to proteins or protein fragments and peptides which are involved in autoimmune diseases. Antigens used in this embodiments, serve to tolerize the immune system or down-regulate immune responses against epitopes involved in autoimmune processes.
Preferably, the antigen is a peptide consisting of 5 to 60, pref¬erably 6 to 30, especially 8 to 11, amino acid residues. Antigens of this length have been proven to be especially suitable for T cell activation. The antigens can further be coupled with a tail, e.g. according to A 657/2000, US. 5,726,292 or WO98/01558.
The antigen may be mixed with the peptides of the present inven¬tion or otherwise specifically formulated e.g. as liposome, re¬tard formulation, etc.. The antigen may also be covalently or non-covalently bound to the peptide according to the present in-

vention. Preferably, the antigens are covalently bound to the peptide as R1 or R2 residues or to side chains of the amino acid residues of the peptide/ especially to the K and R side chain.
The relative amounts of the ingredients of the present composi¬tion are highly dependent on the necessities of the individual composition. Preferably between 10 ng and 1 g of antigen and pep¬tide alpha are applied. Preferred amounts of antigen/peptide al¬pha lie in the range of 0.1 to 1000 ug antigen per vaccination and 0.1 to 1000 ug peptide A. The composition according to the present invention may further contain auxiliary substances, such as buffers, salts, stabilizers. immunostimulants, antioxidants, etc., or other effective substances, such as antiinflammators or antinociceptive drugs.
The present compositions may be applied to a patient, e.g. a vac¬cination candidate, in efficient amounts, e.g. at weekly, bi¬weekly or monthly intervals. Patients to be treated with the pre¬sent composition may al2° be vaccinated repeatedly or only once. A preferred use of the present invention is the active immuniza¬tion, especially of humans or animals without protection against the specific antigen.
The present coposition may be applied subcutaneously, intra-mus-cularly, rectally, intravenally, intradermally, intrapinnally, transdermally as well as by oral uptake.
Of course, the vaccine according to the present invention can comprise any further suftstance, as for example any other pharma¬ceutical^ acceptable carrier, etc. The vaccine according to the present invention may be formulated according to known methods, e.g. as i.v. vaccines, PNA vaccines, transdermal vaccines, topi¬cal vaccines, intranasal vaccines and as combination vaccines. The dosages may be selected by standard processes for vaccines which are improvements ot known vaccines, however, a lower dosage than the known vaccine is possible for the same protection and therefore preferred.
Preferably, the vaccine is provided in a storage-stable form, e.g. lyophilized, optionally provided in combination with a suit-

able reconstitution solution.
The amino acid residues according to the present invention may be D- or L-amino acids. Preferably, all or at least more than 80% of the residues belong to only one species (D or L). Most preferred, all amino acids in the peptide according to the present invention are of the same species (D or L). In some forms, the peptide ac¬cording to the present invention may also comprise additional amino acid residues inserted in the sequence of peptide alpha, however, no A, G and T residues should be contained in the hydro¬phobic portion (Z, zN) of the peptide.
Preferably, in the peptide sequence X is an amino acid residue selected from the group consisting of K, R, ornithine and/or ho-moarginine. Again the X of one peptide alpha can be different amino acid residues selected from this group however, it is pref¬erable that X is either K or R or ornithine or homoarginine in one peptide alpha. .
According to a preferred embodiment of the present invention in the peptide sequence X is. K. The peptide alpha comprising this amino acid as X has beeh shown to be particularly strong in in¬ducing an immune response.
Preferably, in the peptide sequence Z is selected from the group consisting of L, V, I, F and/or W. As mentioned for X, also the Y can represent in one peptide alpha different amino acid residues. However, it is preferred that Z of one peptide alpha is only one amino acid residue, e.g- either L or v or I or F or W, whereby L and I residues are most preferred followed by F, followed by V and followed by W (L>I>F>V>W).
Still preferred, in the peptide alpha sequence Z is L (or I, es¬pecially L). Thereby, the peptide alpha is able to induce a par¬ticularly strong immune response.
Most preferred the peptide alpha is H-KLKLLLLLKLK-H. Of course, also the physiological form of this peptide (e.g. with a proto-nated N-terminus (NH3+ ) and a deprotonated C-terminus (COO-)) shall be deemed to be incorporated in this formula (as for all

peptides according to the present invention).
According to a further advantageous embodiment, in the peptide sequence R1 and/or R2 is/are 10 to 20 amino acid residues. Thereby a peptide alpha is provided which has a length with which a par¬ticularly strong immune response is induced or improved.
According to an advantageous embodiment of the present invention, the amino acid residues of R1 and/or R2 are non-negatively charged amino acid residues.
Again, the amino acid residues can be natural and/or non-natural amino acid residues. By adding non-negatively charged amino acid residues at either one or both ends of the peptide alpha this peptide shows a strong capability for improving or inducing an immune response.
Preferably, R1 and/or R2 form a hydrophobic tail for the peptide A. Therefore, the amino acid residues of R1 and/or R2 are prefera¬bly selected from the group consisting of L, V, I, F and/or W. Still preferred, the amino acid residues of R1 and/or R2 are se¬lected from the group consisting of L, I and/or F. Most preferred the additional amino acid residues are L. These peptides alpha show a particularly strong capability of inducing a higher immune response.
According to a preferred embodiment of the present invention the amino acid residues of R3 and/or R2 are positively charged natural and/or non natural amino acid residues. Preferably, the additio¬nal amino acid residues are selected from the group consisting of K, R, ornithine and/or homoarginine. Still preferred the amino acid residues of R1 and/or R2 are K. These peptides alpha also show a particularly good capability of improving the immune re¬sponse.
It is preferred, that the amino acid residues of R1 and/or R2 are selected from the first group (consisting of L, V, I, F and/or W) or the second group (consisting of positively charged amino acid residues). However, it is also possible, that the amino acid residues of R1 and/or R2are selected from both groups for.one
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single peptide alpha.
The peptide may be linked to the peptide alpha core of the pres¬ent invention by normal peptide bounds or via peptide reactive groups or peptide linkers. Peptide reactive groups are chemical groups suitable for binding peptides or proteins. Therefore, the N- or C-terminus of the present peptide alpha may be chemically modified to comprise a Chemical modification (e.g. iminothioane, 3-mercaptopropionyl,...) allowing the covalent attachment of a peptide or an antigen, respectively. Alternatively, peptide alpha may comprise a suitable peptide linker, i.e. a linker molecule being able to form a link between the core peptide alpha (e.g. the peptide without R1 and/or R2) and e.g. an antigen linked or linkable thereto. The peptide according to the present invention may be present with or without the peptide/antigen being bound to the peptide reactive group and/or the peptide linker. Such chemi-cal modifications and suitable peptide linkers are well available to the skilled man in the art.
Preferably, the vaccine comprises at least one further immune re-sponse stimulating substance. As immune response stimulating sub-stance any substance or molecule can be used which is known to be active as an adjuvant. £uch substances are disclosed in W093/19768. Other substances may be e.g. polycations, as for ex-ample polylysine or polyarginine. Other adjuvants may be compo-nents in the form of particles, e.g. silicagel or dextran beads, which are sufficiently £mall so that they can enter into the cells. The addition of this further immune response stimulating substance will render tfte vaccine even more efficient.
Preferably the pharmaceutical composition according to the pres-ent invention, especially in the form of a vaccine, further com-prises a polycationic polymer, preferably a polycationic peptide, especially polyargininer polylysine or an antimicrobial peptide.
The polycationic compound(s) to be used according to the present invention may be any polycationic compound which shows the char-acteristic effect according to the WO 97/3 0721. Preferred polyca-tionic compounds are selected from basic polypeptides, organic polycations, basic polyaminoacids or mixtures thereof. These
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polyaminoacids should have a chain length of at least 4 ammo acid residues. Especially preferred are substances containing peptidic bounds, like polylysine, polyarginine and polypeptides containing more than 20%, especially more than 50% of basic amino acids in a range of more than 8, especially more than 20, amino acid residues or mixtures thereof. Other preferred polycations and their pharmaceutical compositons are described in WO 97/30721 (e.g. polyethyleneimine) and WO 99/38528. Preferably these polypeptides contain between 20 and 500 amino acid residues, es¬pecially between 30 and 200 residues.
rhese polycationic compounds may be produced chemically or recom-binantly or may be derived from natural sources.
^ationic (poly)peptides may also be polycationic anti-bacterial microbial peptides. These (poly)peptides may be of prokaryotic or eukairyotic origin or may be produced chemically or recombinantly. Peptides may also belong to the class naturally occurring antimi¬crobial peptides. Such host defense peptides or defensives are also a preferred form of the polycationic polymer according to the present invention. Generally, a compound allowing as an end product activation (or down-regulation) of the adaptive immune system, preferably mediated by APCs (including dendritic cells) is used as polycationic polymer.
Especially preferred for use as polycationic substance in the present invention are cathelicidin derived antimicrobial peptides Dr derivatives thereof (A 1416/2000, incorporated herein by ref¬erence) , especially antimicrobial peptides derived from mammalian cathelicidins, preferably from human, bovine or. mouse.
Furthermore, also neuroactive compounds, such as (human) growth tiormone (as described e.g. in WO01/24822) may be used as immu-nostimulants.
Polycationic compounds derived from natural sources include HIV-REV or Hiv-TAT (derived cationic peptides, antennapedia peptides, chitosan or other derivatives of chitin) or other peptides de¬rived from these peptides or proteins by biochemical or recombi¬nant production. Other preferred polycationic compounds are

cathelin or related or derived substances from cathelicidm, es¬pecially mouse, bovine or especially human cathelicidins and/or cathelicidins. Related or derived cathelicidin substances contain the whole or parts of the cathelicidin sequence with at least 15-20 amino acid residues. Derivations may include the substitution or modification of the natural amino acids by amino acids which are not among the 20 standard amino acids. Moreover, further cationic residues may be introduced into such cathelicidin mole¬cules. These cathelicidin molecules are preferred to be combined with the antigen/vaccine composition according to the present in-vention. However, these cathelin molecules surprisingly have turned out to be also effective as an adjuvant for a antigen without the addition of further adjuvants. It is therefore possi-ble to use such cathelicidin molecules as efficient adjuvants in vaccine formulations with or without further immunactivating sub-stances.
Preferably, the immune response stimulating substance is a cyto-kine. Cytokines play an important role in activating and stimu-lating B cells, T cells and NK cells, macrophages, dendritic cells and various other cells participating in inducing immune responses. Any cytokine can be used which will additionally en-hance the immune response to the antigen(s).
Preferably, the vaccine according to the present invention fur-ther comprises an immunostimulating/immunogenic nucleic acid, preferably an oligodeoxynucleotide containing deoxyinosine, an oligodeoxynucleotide containing deoxyuridine, an oligodeoxynu-cleotide containing a methylated or unmethylated CG motif or an inosine and cytidine containing nucleic acid molecule.
The immunogenic nucleic acids to be used according to the present invention can be of synthetic, prokaryotic and eukaryotic origin. In the case of eukaryotic origin, DNA should be derived from, based on the phylogenetic tree, less developed species (e.g. in-sects, but also others). In a preferred embodiment of the inven-tion the immunogenic oligodeoxynucleotide (ODN) is a synthetically produced DNA-molecule or mixtures of such mole-cules. Derivates or modifications of ODNs such as thiophosphate substituted analogues (thiophosphate residues substitute for

phosphate) as for example described in US patents US 5,723,335 and US 5,663,153, and other derivatives and modifications, which preferably stabilize the immunostimulatory composition(s) but do not change their immunological properties, are also included. A preferred sequence motif is a six base DNA motif containing an (unmethylated) CpG dinucleotide flanked by two 5" purines and two 3" pyrimidines (5"-Pur-Pur-C-G-Pyr-Pyr-3"). The CpG motifs con¬tained in the ODNs according to the present invention are more common in microbial than higher vertebrate DNA and display dif¬ferences in the pattern of methylation. Surprisingly, sequences stimulating mouse APCs are not very efficient for human cells. Preferred palindromic or non-palindromic ODNs to be used accord¬ing to the present invention are disclosed e.g. in Austrian Pat¬ent applications A 1973/2000, A 805/2001, . EP 0 468 520 A2, WO 96/02555, WO 98/16247, WO 98/18810, WO 98/37919, WO 98/40100, WO 98/52581, WO 98/52962, WO 99/51259 and WO 99/56755 all incorpo¬rated herein by reference. Apart from stimulating the immune sys¬tem certain ODNs are neutralizing some immune responses. These sequences are also included in the current invention, for example for applications for the treatment of autoimmune diseases. ODNs/DNAs may be produced chemically or recombinantly or may be derived from natural sources. Preferred natural sources are in¬sects.
Alternatively, also nucleic acids based on inosine and cyti-dine (as e.g. described in the PCT/EP01/06437) or deoxynucleic acids containing deoxyinosine and/or deoxyuridine residues (de¬scribed in the Austrian patent applications A 1973/2000 and A 805/2001, incorporated herein by reference) may preferably be used as immunostimulatory nucleic acids for the present inven¬tion.
Of course, also mixtures of different immunogenic nucleic acids may be used according to the present invention.
Another aspect of the present invention is the use of the peptide comprising the sequence Ri-XZXZNXZX-R2 (peptide A) as defined above for the preparation of an adjuvant for enhancing the immune response to at least one antigen.
16

According to a preferred embodiment of the invention/ the adju¬vant is added to a vaccine. It is of course possible to admini¬ster the adjuvant directly to the mammal, e.g. preferably before the vaccination. It is, however, easier for the administration to add the adjuvant to a vaccine which is then administered to the mammal all at once.
According to a further aspect, the present invention relates to a method of vaccinating a mammal including humans against a spe¬cific antigen or a group of specific antigens, said method com¬prising the administration of an effective amount of a vaccine according to the present invention to said mammal, including hu¬mans, to.be vaccinated. Alternatively, the method comprises ad¬ministering an effective amount of an adjuvant comprising the peptide alpha as described above, after which a vaccine is admin¬istered.
The invention will be described in more detail by the following examples and figures, but the invention is of course not limited thereto.
Figure 1 shows the TRANSloading capacity of the (synthetic anti¬microbial) peptide KLKLLLLLKLK (SEQ ID. No. 1) in comparison to diverse, previously described "carrier-peptides".
Figure 2 shows the effectivity of peptide variants according to the present invention compared to other peptides.
Figure 3 shows the amount of IFN-y-producing cells in mice vacci¬nated with an antigenic peptide in combination with the (syn¬thetic antimicrobial) peptide KLKLLLLLKLK.
EXAMPLES
Example 1
TRANSloading murine macrophages with a synthetic antimicrobial peptide as "carrier peptide"
To test if the (synthetic antimicrobial) peptide KLKLLLLLKLK is
17

able to function as "carrier-peptide" for antigens, to TRANSload APCs in vitro, which means enhancing the antigen uptake into APCs, a fluorescently labelled peptide was used as antigenic pep¬tide. It was mixed with diverse concentrations of KLKLLLLLKLK and other previously described "carrier-peptides" as indicated.
To compare the efficiency of peptide delivery of these diverse "carrier-peptides", the amount of peptide uptake into APCs was monitored by incubating P388D1 cells (murine monocyte-macrophage antigen presenting cell line; purchased from ATCC (TIB-63)) for 1 h at 37°C with a constant amount of fluorescein-tagged peptide alone or in combination with diverse "carrier-peptides" at con¬centrations indicated. Before analysing the cells by.flow cytome¬try, the cells were washed extensively to remove free peptide. The relative amount of fluorescein-tagged peptide taken up by the cells was measured by flow cytometry.
The antigenic peptide used is an influenza-haemagglutinin-derived MHCclass I (Kd) binding peptide (Buschle, M. (1997)). 2ug of this antigenic peptide (FL-LFEAIEGFI) were mixed with 3 different amounts of each carrier peptide tested at concentrations repre¬senting 101.7, 50.9 and 5.09 nmol positive charges. (Figure 1 shows the fold increase in enhanced peptide uptake compared to peptide alone):
peptide FL-LFEAIEGFI mixed with
(1) + poly-L-arginine (pR 60; 60 mer)
(2) + murine cathelicidin-derived antimicrobial peptide (mCRAMP);
SEQ ID. No. 2 "
(3) + LL-37; SEQ ID. No. 3
(4) + L-indolicidin; SEQ ID. No 4
(5) + KLKLLLLLKLK (free C-terminus); SEQ ID. No. 1
(6) + linear bovine dodecapeptide; SEQ ID. No. 5
(7) + cyclized bovine dodecapeptide
Whereas fluorescence is known to be sparse in cells treated with peptide alone (as shown previously), intense fluorescence of "TRANSloaded" cells was especially found in cells which were TRANSloaded with the (synthetic antimicrobial) peptide KLKLLLLLKLK as "carrier peptide", indicating that it is able to
18

pulse APCs with an antigenic peptide very efficiently.
Example 2
TRANSloading murine macrophages with diverse synthetic antimicro¬bial peptides as "carrier peptides"
Diverse synthetic antimicrobial peptides of the sequence R1-XZXZNXZX-R.2,were tested to function as "carrier-peptide" for anti-gens, to TRANSload.APCs in vitro, which means enhancing the anti-gen uptake into APCs. For that purpose, a fluorescent labelled peptide was used as antigenic peptide. It was mixed with diverse concentrations of peptides comprising a sequence R1-XZXZNXZX-R2 and other previously described "carrier-peptides" as idicated.
To compare the efficiency of peptide delivery of these diverse "carrier-peptides", the amount of peptide uptake into APCs was monitored by incubating P388D1 cells (murine monocyte-macrophage antigen presenting cell line; purchased from ATCC (TIB-63) for 1 h at 37°C with a constant amount of fluorescein-tagged peptide alone or in combination with diverse "carrier-peptides" at con¬centrations indicated. Before analysing the cells by flow cytome¬try, the cells were washed extensively to remove free peptide. The relative amount of fluorescein-tagged peptide taken up by the cells was measured by flow cytometry.
The antigenic peptide used is an influenza-haemagglutinin-derived MHC class I (Kd) binding peptide (Buschle, M. (1997)). 3ug of this antigenic, peptide (FL-LFEAIEGFI) were mixed with 3. different amounts of each carrier peptide tested at concentrations repre¬senting 101.7, 50.9, and 5.09 nmol positive charges. (Figure 2 shows the fold increase in enhanced peptide uptake compared to peptide alone)•
peptide FL-LFEAIEGFI mixed with
(1) poly-L-arginine (60 mer)
(2) Hp(2-20), a cecropin-like antibacterial peptide derived from the ribosomal protein Ll of Helicobacter pylori; SEQ ID. No:6
" (3) LALF-peptide: SEQ ID No:7

(4) murine cathelicidine-derived antimicrobial peptide; SEQ ID No:2
(5) KAKAAAAAKAK-NH2; SEQ ID. No: 8
(6) KGKGGGGGKGK-NH2; SEQ ID. No: 9
(7) KTKTTTTTKTK-NH2; SEQ ID. No: 10
(8) KLKLVIFWKLK-NH2; SEQ ID. No: 11
(9) KVKVWWKVK-NH2; SEQ ID. No: 12
(10) KWKWWWWWKWK-NH2; SEQ ID. No: 13
(11) KFKFFFFFKFK-NH2; SEQ ID. No: 14
(12) RLKLLLLLKLR-NH2; SEQ ID. No: 15
(13) RLRLLLLLRLR-NH2; SEQ ID. No: 16
(14) KLKLLLLLKLK-NH2; SEQ ID. No: 17
(15) KLKLLLLLKLK-COOH (free C-termihus); SEQ ID..N0.I
Whereas fluorescence is known to be sparse in cells treated with peptide alone (as.shown previously), intense fluorescence of
"TRANSloaded" cells was especially found in cells which were TRRANSloaded with the peptide comprising a sequence Ri-XZXZNXZX-R2
(including the above mentioned preferred embodiments) as "carrier peptide", indicating that the peptides according to the present invention are able to pulse APCs with an antigenic peptide very efficiently.
Example 3
Testing the ability to enhance the induction of peptide-specific T cell responses in vivo
For testing the ability of the (synthetic antimicrobial) peptide KLKLLLLLKLK to enhance the induction of peptide-specific T cell responses in vivo, groups of 4 mice (C57BL/6, female, 8 weeks of age, H-2b) were injected subcutaneously into the flank 3 times (days 0, 28, and 56), with an antigenic melanoma peptide (lOOug) derived from TRP-2 (mouse tyrosinase related protein-2) alone or in combination with either poly-L-arginine or the (synthetic an¬timicrobial) peptide KLKLLLLLKLK as "carrier peptide". The amounts of the (synthetic antimicrobial) peptide KLKLLLLLKLK used represent four different amounts at concentrations representing
20

the equal amount (lOOug) of poly-L-arginine in terms of ug, the equal (168ug), the double (336ug) and the triple (504ug) amount of poly-L-arginine in terms of positive charges. The groups of mice were injected as follows (amounts indicated/per mouse).
(1) lOOug peptide
(2) lOOug peptide + lOOug poly-L-arginine (pR 60)
(3) lOOug peptide + lOOug KLKLLLLLKLK
(4) lOOug peptide + 168ug KLKLLLLLKLK
(5) lOOug peptide + 336ug KLKLLLLLKLK
(6) lOOug peptide + 504ug KLKLLLLLKLK
12 days after the 3rd- vaccination, draining (inguinal) lymph nodes were removed and lymph node cells (Figure 3) were activated ex vivo with TRP-2-derived (mouse tyrosinase related protein-2) pep¬tide to determine IFN-y-producing specific cells in an ELISpot assay (number of IFN-y-ELI Spots per million lymph node cells) .
Figure 3 shows that injection of mice with peptide plus increas¬ing amounts of KLKLLLLLKLK resulted in many more IFN-y-producing specific cells than injection of mice with peptide alone or in combination with poly-L-arginine. It has also been confirmed that the peptide KLKLLLLLKLK does not elicit IFN-y-producing peptide-specific T cells (as confirmed by ELISpot-assay), i.e. that only non KLKLLLLLKLK specific T-cells have been obtained in the pres¬ent experiments.
This example clearly demonstrates that the (synthetic anti-micro-bial) peptide KLKLLLLLKLK enhances the induction of peptide-spe-cific T cell responses in vivo.
In summary, the (synthetic antimicrobial) peptide KLKLLLLLKLK showed a high "TRANSloading" and immunostimulating efficiency, indicating that peptides alpha are able to pulse APCs with anti¬genic peptides in vitro and in vivo very efficiently and are good adjuvants/"carrier-peptides" for antigenic peptides in inducing adaptive immune responses.
21

References:
Banchereau, et al. (1998), "Dendritic cells and the control of immunity", Nature 392(6673): 245-52.
Boman (2000), "Innate immunity and the normal microflora", Immu-nol. Rev. 173: 5-16.
Brossart, et al. (1997), "Presentation of exogenous protein anti-gens on major histocompatibility complex class I molecules by dendritic cells: pathway of presentation and regulation by cyto¬kines", Blood 90(4): 1594-9.
Buschle, et al. (1998), "Chemically defined, cell-free cancer vaccines: use of tumor antigen-derived peptides or polyepitope proteins for vaccination", Gene Therapy and molecular Biology 1: 3 09-21.
Buschle, et al. (1997),."Transloading of tumor antigen-derived peptides into antigen-presenting cells", Proc. Natl. Acad. Sci., USA 94(7): 3256-61.
Cho, et al. (1999), "Activation of human neutrophils by a syn¬thetic anti-microbial peptide, KLKLLLLLKLK-NH2, via cell surface calreticulin", Eur. J. Biochem. 266: 878-85.
Ganz, et al. (1997), "Antimicrobial peptides of leukocytes", Curr. Opin. Hematol. 4(1): 53-8.
Ganz, T., (1998), "Antimicrobial peptides of vertebrates", Curr. Opin. Immunol. 10(1): 41-4.
Ganz, et al. (1999), "Antibiotic peptides from higher eukaryo-tes: biology and applications." Mol. Med. Today 5(7): 292-7.
Gudmundsson, et al. (1999), "Neutrophil antibacterial peptides, multifunctional effector molecules in the mammalian immune sys¬tem" , J. Immunol. Methods 232(1-2): 45-54.

Harding (1995), "Phagocytic processing of antigens for presenta¬tion by MHC molecules", Trends in Cell Biology 5(3): 105-09.
Harding (1996), "Class I MHC presentation of exogenous antigens", J". Clin. Immunol. 16.(2): 90-6.
Mizukawa, et al. (1999), "Presence of defensin in epithelial Lan-gerhans cells adjacent to oral carcinomas and precancerous le-sions" , Anticancer Res. 19(4B): 2669-71.
Monaco (1992), "A molecular model of MHC class-I-restr-icted anti-gen processing", Immunol. Today 13(5): 173-9.
Nakajima, et al. (1997), "Chemotherapeutic activity of synthetic antimicrobial peptides: correlation between chemotherapeutic ac¬tivity and neutrophil-activating activity", FEBS Lett. 415: 64-66.
Schijns (2000), "immunological concepts of vaccine adjuvant ac¬tivity", Curr. Opin. Immunol. 12(4) : 456-63.
Schmidt, et al. (1997), "Cell-free tumor antigen peptide-based cancer vaccines", Proc. Natl. Acad. Sci., USA 94 (7) : 3262-7.
Zanetti, et al. (1997), "The cathelicidin family of antimicrobial peptide precursors: a component of the oxygen-independent defense mechanisms of neutrophils", Ann. N. Y. Acad. Sc. 832: 147-62.
-^^3>

WE CLAIM:
1. Vaccine composition characterized in that it comprises at least
one antigen such as herein described and a peptide comprising a
sequence R1-XZXZNXZX-R2, whereby
- N is a whole number between 3 and 7, preferably 5,
- X is a positively charged natural and/or non-natural amino acid
residue,
- Z is an amino acid residue selected from the group consisting of L,
V, I, F and/or W, and -R1 and R2 are selected independently one from the other from the group consisting of -H, -NH2, -COCH3, -COH, a peptide with up to 20 amino acid residues or a peptide reactive group or a peptide linker with or without a peptide; X-R2 may also be an amide, ester or thioester of the C-terminal amino acid residue, wherein said antigen and peptide are present in a range between 0.1 to 1000 |ig each.
2. Vaccine composition as claimed in claim 1, wherein in the peptide sequence, X is an amino acid residue selected from the group consisting of K, R, ornithine and/or homoarginine.
3. Vaccine composition as claimed in claim 2, wherein in the peptide sequence, X is K.
4. Vaccine composition as claimed in any one of claims 1 to 3, wherein in the peptide sequence, Z is selected from the group consisting of L, I and/or F.
5. Vaccine composition as claimed in claim 4, wherein in the peptide sequence, Z is L.
6. Vaccine composition as claimed in claim 1, wherein the peptide sequence is H-KLKLLLLLKLK-H.

7. Vaccine composition as claimed in any one of claims 1 to 6, wherein said peptide sequence R1 and/or R2 contain/s 10 to 20 amino acid residues.
8. Vaccine composition as claimed in claim 7, wherein the amino acid residues of R1 and/or R2 are non-negatively charged amino acid residues.
9. Vaccine composition as claimed in claim 8, wherein the amino acid residues of R1 and/or R2 are selected from the group consisting of L, V, I, F and/or W.
10. Vaccine composition as claimed in claim 9, wherein the amino acid residues of R1 and/or R2 are selected from the group consisting of L, I and/or F.
11. Vaccine composition as claimed in claim 10, wherein the amino acid residues of R1 and/or R2 are L.
12. Vaccine composition as claimed in any one of claims 7 to 11, wherein the amino acid residues of R1 and/or R2 are positively charged natural and/or non-natural amino acid residues.
13. Vaccine composition as claimed in claim 12, wherein the amino acid residues of R1 and/or R2 are selected from the group consisting of K, R, ornithine and/or homoarginine.
14. Vaccine composition as claimed in claim 13, wherein the amino acid residues of R1 and/or R2 are K.
15. Vaccine composition as claimed in any one of claims 1 to 14, wherein it comprises at least one optional! immune response stimulating substance.

16. Vaccine composition as claimed in any one of claims 1 to 15, wherein it optionally comprises an immunostimulatory nucleic acid, preferably an oligodeoxynucleotide containing deoxyinosine, an oligodeoxynucleotide containing deoxyuridine, an oligodeoxynucleotide containing a CG motif or an inosine and cytidine containing nucleic acid molecule, as herein described.
17. Vaccine composition as claimed in any one of claims 1 to 16, wherein it optionally comprises a cytokine as herein described as immune response stimulating substance.
18. Vaccine composition as claimed in any one of claims 1 to 17, wherein it optionally comprises a polycationic peptide, a neuroactive compound or a hormone with growth factor activity, as herein described.
Dated this 26th day of February, 2003.

Documents:

263-mumnp-2003-abstract 1(22-06-2007).doc

263-mumnp-2003-abstract(22-06-2007).pdf

263-mumnp-2003-cancelled page(22-06-2007).pdf

263-mumnp-2003-claims(granted)-(22-06-2007).doc

263-mumnp-2003-claims(granted)-(22-06-2007).pdf

263-mumnp-2003-correspondence 1(20-01-2003).pdf

263-mumnp-2003-correspondence 2(22-06-2007).pdf

263-mumnp-2003-correspondence-ipo(09-11-2006).pdf

263-mumnp-2003-drawing(22-06-2007).pdf

263-mumnp-2003-form 13(10-07-2007).pdf

263-mumnp-2003-form 13(25-06-2007).pdf

263-mumnp-2003-form 18(28-12-2005).pdf

263-mumnp-2003-form 1a(22-06-2007).pdf

263-mumnp-2003-form 1a(26-02-2003).pdf

263-mumnp-2003-form 2(granted)-(22-06-2007).pdf

263-mumnp-2003-form 3(03-07-2003).pdf

263-mumnp-2003-form 3(25-06-2007).pdf

263-mumnp-2003-form 3(26-02-2003).pdf

263-mumnp-2003-form 3(27-07-2004).pdf

263-mumnp-2003-form 5(26-02-2003).pdf

263-mumnp-2003-form-pct-ipea-409.(26-02-2003)pdf.pdf

263-mumnp-2003-form-pct-isa-210(26-02-2003).pdf

263-mumnp-2003-petition under rule 137(25-06-2007).pdf

263-mumnp-2003-power of authority(22-06-2007).pdf

abstract1.jpg


Patent Number 211531
Indian Patent Application Number 263/MUMNP/2003
PG Journal Number 04/2008
Publication Date 25-Jan-2008
Grant Date 01-Nov-2007
Date of Filing 26-Feb-2003
Name of Patentee INTERCELL AG
Applicant Address Campus Vienna Biocenter 6, A-1030 Vienna
Inventors:
# Inventor's Name Inventor's Address
1 JORG FRITZ Neubaugasse 55/1/2B A-1070 Vienna
2 FRANK MATTNER Krottenbachstrasse 267/D12 A-1190 Vienna
3 WOLFGANG ZAUNER Parkgasse 13/22 A-1030 Vienna
4 ESZTER NAGY Taborstrasse 9 A-1020 Vienna
5 MICHAEL BUSCHLE Goethestrasse 2/2/9 A-2380 Perchtoldsdorf
PCT International Classification Number A61K39/39
PCT International Application Number PCT/EP01/12041
PCT International Filing date 2001-10-18
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 A 1789/00 2000-10-18 Austria