Title of Invention

"A CHROMOGENIC ENZYMATIC SUBSTRATE FOR DETECTION OF MICRO ORGANISM WITH PEPTIDASE ACTIVITY"

Abstract A chromogenic enzymatic substrate, characterized in that it corresponds to formula (I) below: -R1 represent a hydrogen atom, a C1-C12 alkyl group, a C6-C14 aralkyl group, an aryl group, -COOH^-COOR'or-NR"R"', - R2 represents a hydrogen atom, a halogen atom, a C1-C12 alkyl group, -COOH or -COOR', at least one of R1 and R2 being a hydrogen atom or a hologen atom, -R3 represents a hydrogen atom, a halogen atom, -CN, -CONH2, -COOR' or -COR', -R4, R5 and R6 each independently represent a hydrogen atom or a C1-C3 alkyl group, at least one of R4, R5 and R5 being a hydrogen atom, R' represents a hydrogen atom or a C1-C6 alkyl group, - R" and R'" each independently represent a C1-C6 alkyl group, or else R" and R'", together with the nitrogen atom to which they are attached, form a heterocyclic ring containing one or more heteroatoms, - A represents at least one amino acid, and - X represents a blocking agent or nothing.
Full Text Novel enzymatic substrates derived from phenoxazinone and their use as
developer in detection of microorganisms with peptidase activity
The present invention relates to novel chromogenic enzymatic substrates for the
detection of peptidase activity. These substrates can be used in applications comprising
an enzymatic hydrolysis step that produces a physicochemical signal, in particular in
microbiology, biochemistry, immunology, molecular biology, histology, etc. Compared
with the existing substrates, most of which are only fluorigenic, the chromogenic
substrates of the invention can be used in particular in a gelled medium for the
detection of microorganisms since they produce a coloration that does not diffuse in the
reaction medium and is therefore concentrated within the colonies.
The invention also relates to reaction media containing such substrates, to the
use of the substrates or the media for detecting Gram-negative bacteria, Gram-positive
bacteria and yeasts expressing a peptidase activity, and to methods of use.
An enzyme is generally called an aminopeptidase if it is capable of cleaving by
hydrolysis the amide group formed between an acyl of an amino acid and a primary
amine, and an enzyme is generally called a peptidase if it is capable of cleaving by
hydrolysis the amide group formed between the acyl residue of a peptide and a primary
amine. In the present application, the term "peptidase" can denote, as appropriate, both
a peptidase and an aminopeptidase as defined above.
Enzymatic chromogenic substrates for the detection of peptidase activity that do
not diffuse are described and already known in the prior art. Thus, such substrates are
covered by patent applications WO98/04735 and WO99/38995 filed by the applicant.
However, these substrates have various drawbacks: they are difficult to synthesize, the
purity is low and the yields are low. Furthermore, for use in culture media, a very
precise medium composition must be defined in order to observe a color.
The only existing substrates that can be used in solid media for the detection of
microorganisms in mixed cultures are acridine-derived substrates and are described in
PCT patent application WO2004/069804 filed by the applicant.
Molecules derived from phenoxazinone are known for their ability to produce
fluorescence. They can be used :
-as acid-base indicators, as described, for example, in Stuzka, V. et al, 1963,
Collection Czech. Chem. Commun., 28, 1399-1407, or else
- as fluorescent labels, for example for following conformation of modifications of
proteins, as described in Nakanishi J. et al., 2001, Analytical Chemistry, 73(13), 2920-
2928, or else, for example, for the detection of microorganisms as described in US
patent 5,336,600. In the latter case, the compounds described have the drawbacks that
they can only be used in liquid media and that the detection of the microorganisms,
which occurs via the demonstration of bacterial growth, is carried out by modification
of the redox potential. There is therefore no specificity in relation to an enzymatic
activity nor in relation to a bacterial genus or species.
No aminophenoxazinone derivative currently described, and in particular no
resorufamine derivative, has ever been used as a chromogenic enzymatic substrate that
can be used in a gelled medium.
In accordance with the present invention, novel chromogenic enzymatic
substrates for detecting microorganisms expressing a peptidase activity are proposed.
The invention also relates to reaction media containing such substrates, and also to the
use of the substrates or of the media for detecting peptidase activities, and to methods
of use.
The applicant has found, surprisingly, that it is possible to detect
microorganisms expressing a peptidase activity by using novel chromogenic
phenoxazinone derivatives which produce a coloration that does not diffuse in the
reaction medium and is therefore concentrated at the colonies, the peptidase activity
being demonstrated by a modification of the coloration of the colonies in the culture
medium.
After inoculation of the reaction media containing the substrates of the
invention, with the microorganisms to be tested, colonies which are colorless-to-white
are observed when they are not capable of hydrolyzing the substrate. On the other hand,
colored colonies are observed when they are capable of hydrolyzing the substrate of the
invention.
The phenoxazinone derivatives of the invention are both chromogenic and
fluorigenic and have the advantage of having a good detection sensitivity. In addition,
the excitation and the emission of the fluorescence take place in the visible spectrum,
such that the fluorescence can be detected by the naked eye and under normal
illumination.
Thus, a subject of the present invention is chromogenic enzymatic substrates of
formula (I):
(Figure Removed)
in which
- RI represents a hydrogen atom, a C1-C12alkyl group, a C1-C12 aralkyl group, an aryl
group, -COOH, -COOR' or-NR"R'",
-Ra represents a hydrogen atom, a halogen atom, a C1-C12 alkyl group, -COOH or
-COOR',
- RS represents a hydrogen atom, a halogen atom, a C1-C12 alkyl group, -CN, -CONH2,
-COOR1 or -COR,
- R4, RS and Re each independently represent a hydrogen atom, a halogen atom, -COOR'
or a C1-C12 alkyl group, it being understood that at least one of R4, RS and R& is a
hydrogen atom,
- R' represents a hydrogen atom or a C1-C12, alkyl group,
- R" and R1" each independently represent a C1-C12 alkyl group, or else R" and R'",
together with the nitrogen atom to which they are attached, form a heterocyclic ring
containing one or more heteroatoms,
- A represents at least one amino acid, and
- X represents a blocking agent or nothing.
According to the invention, the term "aryl" is in particular intended to mean a
C1-C12aromatic ring, especially phenyl, benzyl, 1-naphthyl or 2-naphthyl. The same is
true of the aryl part of the aralkyl groups. Thus, the alkyl group of theC1-C12 aralkyl
PC
group is C2-C8.
The term C1-C12 alkyl group" is intended to mean a straight or branched alkyl
having from x to y carbon atoms, in the present case from 1 to 12 carbon atoms, from 1
to 6 carbon atoms, or from 1 to 3 carbon atoms or from 2 to 8 carbon atoms. By way of
example, mention may be made of methyl, ethyl, propyl, isopropyl, butyl, isobutyl, tbutyl,
pentyl, isopentyl, hexyl, heptyl, octyl, nonyl, decyl, undecyl and dodecyl.
The term "halogen atom" is intended to mean chlorine, bromine, iodine or
fluorine.
The term "heteroatom" is intended to mean an atom other than a carbon atom,
for instance O, N or S.
The heterocyclic rings that R" and R"' can form may be of any size, but they
preferably contain from 5 to 7 ring members.
Examples of a heterocyclic ring include the morpholine, piperazine, piperidine,
pyrrolidine and imidazolidine rings.
The blocking agents according to the invention include any blocking agent
known to those skilled in the art which is capable of protecting amines. By way of
example, mention may be made of t-butoxycarbonyl (N-tBOC), 9-
fluorenyloxycarbonyl, a solubilizing agent such as succinyl, or else a nonmetabolizable,
i.e. unnatural, amino acid such as pipecolic acid.
The blocking agents are not systematically present in the compounds of the
invention. In this case, i.e. when the compounds of the invention do not have a blocking
agent (X is nothing), the compounds of the invention are in the form of a salt such as
chloride, bromide or trifluoroacetate.
The amino acids that are represented by A in formula (I) are any amino acid
known to those skilled in the art.
According to a specific embodiment, a subject of the present invention is also
chromogenic enzymatic substrates of formula (I):
R
(Figure Removed)
in which
- RI represents a hydrogen atom, a C1-C12 alkyl group, a C1-C12 aralkyl group, an aryl
group, -COOH, -COOR' or-NR"R"',
- R2 represents a hydrogen atom, a halogen atom, a C1-C12 alkyl group, -COOH or
-COOR',
it being understood that at least one of RI and R2 is a hydrogen atom or a halogen atom,
- R3 represents a hydrogen atom, a halogen atom, -CN, -CONH2, -COOR1 or -COR',
- R4, RS and R$, each independently represent a hydrogen atom or a C1-C12 alkyl group,
it being understood that at least one of Rj, RS and R$ is a hydrogen atom,
- R' represents a hydrogen atom or a C1-C12 alkyl group,
-R" and R'" each independently represent aC1-C12 alkyl group, or else R" and R'",
together with the nitrogen atom to which they are attached, form a heterocyclic ring
containing one or more heteroatoms,
- A represents at least one amino acid, and
- X represents a blocking agent or nothing.
According to one embodiment of the invention, A represents an amino acid or a
peptide having at most 10 amino acids, in which the amino acids are identical or
different. Preferably, in the interests of cost of the substrate, A represents an amino acid
or a peptide having at most 4 amino acids, in which the amino acids are identical or
different.
Among the amino acids suitable for the purposes of the invention, mention may,
for example, be made of cc-alanine and p-alanine, leucine, proline and pyroglutamine.
According to one embodiment of the invention, the compounds of the invention
for which RI represents an alkyl group and R2 represents a hydrogen group are
preferred. More preferably, RI represents a C1-C12, or even C1-C12 alkyl group, methyl
and pentyl being particularly preferred.
The compounds for which RI represents a hydrogen atom and R2 represents a
C1-C12 alkyl group constitute another embodiment of the invention. The compounds for
which RI represents an ethyl or hexyl group are preferred.
According to yet another embodiment, the compounds of the invention are such
that RS, RI, RS and R(6each represent a hydrogen atom.
According to another embodiment, the compounds for which RI and R2
represent an alkyl group or a halogen atom and R* represents a hydrogen atom, an alkyl
group or -COOR, where R' is an alkyl group, are also preferred. Preferred alkyl groups
are C1-C12 preferably C\, alkyl groups.
According to another embodiment, the compounds for which RI, R2, RB and R4
are alkyl groups or a hydrogen atom are also preferred. Alkyl groups that are preferred
are C1-C12 preferably Ci, alkyl groups.
The compounds of the invention can be prepared according to the procedure
represented in scheme 1 below :
Scheme 1
(Figure Removed)
According to scheme 1, the appropriate dichloroimine (3) is prepared by
oxidative chlorination of appropriately substituted p-phenylenediamine (1) in the
presence of compound (2) according to the Willstaetter and Mayer protocol (1904). The
dichloroimine (3) thus obtained is then condensed in an ethanolic solution with
appropriately substituted resorcinol (4) so as to give resorufamine (5). The
resorufamine (5) is then reacted with one or more optionally protected amino acids (6)
in a bath cooled to approximately -12°C, to give the compound of formula (I). It should
be noted here that, of course, when A is a single amino acid, A' in compound (6)
corresponds to A of compound (I), but containing an additional hydroxyl group. In
other words, when A is a single amino acid, A' ends with -C(O)OH, whereas A is
connected to -NH- via -C(O)-, losing -OH. When A is a chain of at least two amino
acids, the last amino acid of A' is as described above, i.e. it contains, compared with the
last amino acid of A, an additional hydroxyl group.
This process can be used to prepare all the compounds of the invention.
However, preferably, the compounds of formula (I) for which R\ or R2 is an alkyl group
can be prepared according to the protocol described in scheme 2 below.
Scheme 2
In scheme 2 above, the nitroso compound (8) is prepared by reaction of an
appropriately substituted 3-aminophenol (7) with an alkali metal nitrite, such as sodium
nitrite, in the presence of phosphoric acid or of sulfuric acid, at a temperature of from 0
to -3°C. The nitrosoacetamidophenol compound (8) thus obtained is then reacted with
an appropriately substituted resorcinol (4) in a solvent such as propanol or butanol, in
the presence of sulfuric acid as acid catalyst, and a cyclization agent. The
acetamidophenoxazinone thus obtained is deacetylated by means of a brief period of
heating in the presence of sulfuric acid at 90°C, which process is followed by cooling
and by an aqueous precipitation. The resorufamine (5) thus obtained is then reacted
with one or more optionally protected amino acids (6) as indicated in the protocol of
scheme 1.
The compounds can also be prepared according to the following protocol, as
represented in scheme 3 :
Scheme 3
Synthesis of substituted 2,5-dimethoxyphenols
(Figure Removed)
In scheme 3 above, the compounds of the invention are prepared in 4 stages.
According to the first stage, the appropriately substituted 2,5-dimethoxyphenol
compound (12) is prepared from a hydroquinone compound (9), also appropriately
substituted. This compound (9) is added in dimethylformamide (DMF) with NaH, and
then with methyl iodide, which reaction is followed by stirring at 40°C, to give the
appropriately substituted 2,5-dimethoxyphenyl compound (10). This compound is then
added in trifluoroacetate (TFA) with urotropin under reflux according to the Duff
reaction (Smith WE, 1972, J Org. Chem., 37 : 3972), to give the appropriately
substituted 2,5-dimethoxybenzaldehyde (11). Finally, compound (11) is added in
methanol with magnesium monoperoxyphthalate at 0°C, and then DMF with NaOH
according to the Bayer-Villiger reaction (Capecchi T., et al., 2000, J. Chem. Soc.,
Perkin Trans. 1, 2681), to give the appropriately substituted 2,5-dimethoxyphenol (12).
According to the 2nd stage, the 2,5-dinitrofluorobenzene (17) is prepared from
an appropriately substituted fluoroaniline (13). This compound (13) is added at 0°C in
triethylamine and dichloromethane (DCM) with acetyl chloride, to give the
appropriately substituted N-acetylfluoroaniline (14). This compound is then added with
a mixture of concentrated sulfuric acid and of nitric acid in acetic acid, to give the
appropriately substituted nitroaniline compound (15). This compound (15) is brought to
reflux with hydrochloric acid, to give the nitroaniline compound (16) which is itself
added in acetic acid with sodium perborate at 65°C, to give the compound (17).
According to the 3rd stage, the resorufamine (5) is obtained by reaction of the
2,5-dimethoxybenzene (12) obtained in the 1st stage and of the 2,5-dinitrofluorobenzene
(17) obtained in the 2nd stage, as follows : compounds (12) and (17) are added in DMF
with NaH at ambient temperature, to give the appropriately substituted diaryl ether (18).
This compound (18) is then added in DCM with BBrs, to give the dihydroxydiaryl ether
(19) which is itself added to methanol in the presence of the Pd/C catalyst, to give the
resorufamine (5).
Finally according to the last stage, the resorufamine (5) thus obtained is then
mixed with one or more optionally protected amino acids (6), as indicated in the
protocol of scheme 1.
In the above protocols, the starting reactants (compounds (1), (2), (4), (6), (7),
(9) and (13)) are commercially available, in particular from Sigma.
A subject of the invention is also a reaction medium comprising at least one
chromogenic enzymatic substrate of formula (I) as defined above, alone or in
combination with at least one other enzymatic substrate specific for an enzymatic
activity other than that detected by the substrate according to the invention.
In fact, when microorganisms expressing a peptidase activity are inoculated into
or onto a reaction medium containing the compounds of the invention, a coloration
occurs which does not diffuse in or on the reaction medium and is therefore
concentrated at the colonies.
According to the invention, the term "reaction medium" is intended to mean a
medium that allows the development of at least one enzymatic activity of at least one
microorganism.
This reaction medium can either be used only as a developing medium, or as a
culture and developing medium. In the first case, the culturing of the microorganisms is
carried out before inoculation, and, in the second case, the reaction medium also
constitutes the culture medium, and this constitutes a specific embodiment of the
invention.
The reaction medium may be solid, semi-solid or liquid. The term "solid
medium" is intended to mean, for example, a gelled medium.
Agar is the conventional solid medium in microbiology for culturing
microorganisms, but it is possible to use gelatin, agarose or another gelling agent. A
certain number of preparations are commercially available, for instance Columbia agar,
trypcase-soy agar, MacConkey agar, Sabouraud agar or, more generally, those described
in the Handbook of Microbiological Media (CRC Press).
Preferably, when the reaction medium is also a culture medium, it is in gel form.
The amount of agar in the reaction medium is from 2 to 40g/l. For the solid
media, the amount of agar is preferably from 9 to 25g/l, more preferably from 12 to
14 g/1, and for the semi-solid media, the amount of agar is preferably from 2 to 6 g/1.
The enzymatic substrates of the invention can be used in a wide pH range, in
particular between pH 5.5 and 10.
The concentration of enzymatic substrate of the invention in the reaction
medium is between 0.01 and 1 g/1, preferably between 0.025 and 0.40g/1, and it is
advantageously 0.05 g/1. This is because, at this substrate concentration, a better
coloration contrast is obtained.
The reaction medium may comprise at least one other substrate specific for an
enzymatic activity other than that detected by the substrate according to the invention.
The enzymatic hydrolysis of the other substrate(s) generates a detectable signal that is
different than the signal detected by the substrate of the invention, for instance different
colored or fluorescent products, so as to allow the demonstration, such as the detection
and/or the identification and/or the quantification, of one or more microorganisms.
By way of other specific substrates, mention may be made of substrates of
indoxyl type, such as 5-bromo-4-chloro-3-indoxyl-(3-D-glucoside (BIOSYNTH) or 5-
bromo-6-chloro-3-indoxyl-p-D-galactoside (BIOSYNTH), or any other substrate used
in the detection of microorganisms.
The concentration of the other specific enzymatic substrate is generally between
0.01 and 2 g/1. Those skilled in the art will be able to readily determine such a
concentration according to the substrate used.
The reaction medium may also comprise one or more elements in combination,
such as amino acids, peptones, carbohydrates, nucleotides, minerals, vitamins,
antibiotics, surfactants, buffers, phosphate salts, ammonium salts, sodium salts or metal
salts. Examples of media are described in the applicant's patent applications EP 656 421
and WO99/09 207.
The enzymatic substrates and reaction media of the invention can therefore be
used in the diagnosis of microorganisms with peptidase activity.
Thus, a subject of the present invention is also the use of a chromogenic
enzymatic substrate of formula (I), or of a reaction medium as defined above, for
detecting and/or identifying and/or quantifying, in vitro, microorganisms expressing at
least one peptidase activity.
The invention also relates to a method for detecting and/or identifying and/or
quantifying microorganisms expressing at least one peptidase activity, characterized in
that it consists in :
• providing a reaction medium, as defined above,
• inoculating the medium with a biological sample to be tested,
• leaving this to incubate, and
• revealing the presence of at least one peptidase activity alone or in combination with
at least one other enzymatic activity other than this same peptidase activity.
The inoculation and incubation steps are widely known to those skilled in the
art.
For example the incubation temperature is generally between 20 and 55°C, most
commonly between 25 and 45°C, temperatures of 30, 35 and 37°C being the incubation
temperatures most commonly used. As regards the incubation atmosphere, it is
anaerobic or aerobic without distinction.
The developing is carried out by the naked eye by visualization of a change in
coloration that does not diffuse in the reaction medium and is therefore concentrated at
the colonies.
By way of microorganisms that can be diagnosed by virtue of the enzymatic
substrate of the invention, mention may be made of Gram-negative bacteria, Grampositive
bacteria and yeasts.
By way of Gram-negative bacteria, mention may be made of bacteria of the
following genera : Pseudomonas, Escherichia, Salmonella, Shigella, Enterobacter,
Klebsiella, Serratia, Proteus, Campylobacter, Haemophilus, Morganella, Vibrio,
Yersinia, Acinetobacter, Branhamella, Neisseria, Burkholderia, Citrobacter, Hafnia,
Edwardsiella and Legionella.
By way of Gram-positive bacteria, mention may be made of bacteria of the
following genera : Enterococcus, Streptococcus, Staphylococcus, Bacillus, Listeria,
Clostridium, Mycobacteria and Corynebacteria.
Examples of yeasts include yeasts of the following genera: Candida,
Cryptococcus, Saccharomyces and Trichosporon.
The substrates of the invention are particularly suitable for the detection of
Gram-negative bacteria because both a microorganism growth and a clear coloration of
the colonies are obtained.
In particular, the chromogenic substrates of the invention in which A is Lalanine
have the advantage that they make it possible to clearly differentiate Gramnegative
bacteria from Gram-positive bacteria.
Thus, another subject of the invention consists of a method for differentiating
bacteria in terms of whether they belong to Gram-positive microorganisms or to Gramnegative
microorganisms, characterized in that it consists in :
• providing a reaction medium, as defined above and in which the substituent A of the
chromogenic substrate is L-alanine,
• inoculating the medium with a biological sample to be tested,
• leaving this to incubate, and
• revealing the presence of at least one color variation synonymous with the presence
of Gram-negative microorganism(s).
The chromogenic substrates of the invention in which A is p-alanine or
pyroglutamine have the advantage that they make it possible to distinguish
Pseudomonas aeruginosa from the other genera, and also from the other strains of
Pseudomonas.
Thus, another subject of the invention consists of a method for detecting
Pseudomonas aeruginosa, characterized in that it consists in :
• providing a reaction medium, as defined above and in which the substituent A of the
chromogenic substrate is p-alanine or pyroglutamine,
• inoculating the medium with a biological sample to be tested,
• leaving this to incubate, and
• revealing the presence of at least one color variation synonymous with the presence
of Pseudomonas aeruginosa microorganism(s).
The biological samples to be analyzed are any clinical sample, such as a saliva,
blood, urine or stool specimen or any other sample of which the analysis may aid a
clinician in providing a diagnosis. The sample may also be a product derived from, or a
base product of, the food and/or pharmaceutical industry, in which it is necessary either
to guarantee the absence of pathogenic microorganisms, or to count a contaminating
flora, or to detect specific microorganisms.
The invention will be understood more fully from the following examples, given
by way of nonlimiting illustration.
Example 1 ; Synthesis of 7-N-(N'-t-butoxycarbonvl-lj-a\any\)ammo-2-
chloro-l-pentylphenoxazin-3-one and of 7-N-(N'-t-butoxvcarbonyl-Ij-a\an\l)-
amino-1-pentvlphenoxazin -3-one
1,4-Dichlorobenzoquinonediimine was prepared by chlorination of 1.76g
(lOmmol) of p-phenylenediamine, and was dissolved by heating in the presence of
anhydrous methanol (50ml) and 9 g of urea added to the stirred solution. 1.8 g
(lOmmol) of 5-pentylresorcinol was subsequently added to the solution at 40-50°C
and, after complete dissolution, the reaction mixture was brought to reflux carefully in
order to avoid excessive exothermia. The heating was continued for 1.5 h, after which
time the cooled reaction mixture was added slowly to a well-stirred ice/water mixture
containing ammonia. The precipitate was recovered by suction filtration and was
washed with water and then air dried so as to obtain 2.2 g of crude product consisting of
a mixture of the title compounds, the non-chlorinated product being predominant.
Acetic acid (30%, 200 cm3) from a 2-necked flask was added, dropwise, while
stirring, to a solution consisting of approximately 5 g of sodium borohydride and
200 mg of sodium hydroxide dissolved in 200 cm3 of water. Hydrogen gas was passed
through a 3-necked flask in which the mixture of 7-amino-2-chloro-lpentylphenoxazin-
3-one and 7-amino-l-pentylphenoxazin-3-one (0.564 g) was
dissolved in anhydrous dimethylformamide (15 cm3 by heating and then cooling) and
the solution was diluted with anhydrous tetrahydrofuran (THF) (15 cm3). A Pd/C
catalyst (5%, 200 mg) was added to the solution. The solution was sparged gently with
hydrogen gas and this was continued for a long time after the apparent reduction
(approximately 1 h). The reduction was demonstrated by the solution turning from a
purple color to a grayish-green color. A solution of resorufamine was thus obtained.
In a separate flask, 0.756 g (4.0 mmol) of N-t-Boc-L-a\anine and 0.408 g
(4.0mmol) of N-methylmorpholine were dissolved in anhydrous THF (10 cm3), the
solution was cooled to -20°C and 0.56 cm3 (4.0 mmol) of isobutyl chloroformate was
added, with stirring. The mixture was stirred at -20°C for a further 30 min, after which
time the mixture was introduced, at -10°C, into the solution of resorufamine with
stirring, while at the same time sparging with hydrogen gas. After 15 min, the
introduction of hydrogen was stopped, the system was sealed and the reaction mixture
was stirred overnight at ambient temperature. The reaction mixture was filtered and the
solvent was evaporated off under reduced pressure, the residual solid was dissolved in
dichloromethane (DCM), the DCM solution was filtered and washed with NaHCCh
(5%, twice 50 cm3) and water (50 cm3). The organic phase was dried with MgS04,
filtered and concentrated so as to obtain a residue consisting of the two title products.
They were purified by silica column chromatography, elution being carried out with a
mixture of petrol and ethyl acetate (7:3). The first spot corresponds to 7-N-(N'-t-
M/oxycar6o«.y/-L-alanyl)amino-2-chloro-l-pentyl-phenoxazin-3-one in the form of an
orange solid and the second spot corresponds to 7-N-(N'-t-butoxycctrbonyl-L-a\ai\y\)-
amino-l-pentylphenoxazin-3-one in the form of a brown solid.
Example 2; Synthesis of 7-N-(Arf-r-/mtoA:vcar^o/iv/-B-alanyl)amino-2-chloro-lpentylphenoxazin-
3-one and of l-N-(N'-t-butoxvcarbonvl-$-alsm\l)-ammo-lpentylphenoxazin-
3-one
The protocol described in example 1 above was repeated, except that N-t-Boc-$-
alanine was used in place of Nr-Ztoc-L-alanine.
In order to recover the title compounds, silica column chromatography was
performed, elution being carried out with a mixture of petrol/ethyl acetate (6:4). The
first spot corresponds to 7-N-(N'-t-butoxycarbonyl--a\any\)amino-2-ch\oro-lpentylphenoxazin-
3-one in the form of an orange solid and the second spot corresponds
to 7-N-(N'-t-butoxycarbonyl-fi-a\any\)-ammoA-penty\pherioxazm-3-ot\e in the form of
an orange solid.
Example 3 ; Deprotection of the aminated derivatives
To do this, the compounds obtained in examples 1 and 2 were dissolved in
2 cm3 of TFA (trifluoroacetate) in the following proportions : 0.10 g (0.21 mmol) for
the 7-N-(N'-t-butoxycctrbonyl-L-a\any\)amino-2-ch\oro-1 -pentylphenoxazin-3-one and
80 mg (0.18 mmol) each for the 7-N-(N'-t-butoxycarbonyl-L-a\any\)amino-\-
pentylphenoxazin-3-one, 7-N-(N'-t-butoxycarbonyl-p-alanyl)amino-2-chloro-1 -pentylphenoxazin-
3-one and 7-N-(N'-t-butoxycarbonyl-$-alany\)ammo-1 -pentylphenoxazin-
3-one.
The mixture was kept at ambient temperature for 15 min. The progression of the
reaction was recorded by thin layer chromatography until no further starting material
was demonstrated. The TFA was evacuated off under vacuum and the residue was
completely washed with ether and dried so as to obtain the various compounds in the
form of a trifluoroacetate salt (brown solid), according to the following yields : 0.095 g
(92%) for the 7-N-(N'-t-butoxycarbonyl-L-a\anyl)ammo-2-ch\oroA-penty\phenoxazm-
3-one and 80 mg (97%) each for the 7-N-(N'-t-butoxycarbonyl-L-a\anyl)amino-lpentylphenoxazin-
3-one, 7-N-(Ar'-/-6wtoxycar6orty/-p-alanyl)amino-2-chloro-1 -
pentylphenoxazin-3-one and l-N-(N'-t-butoxycarbonyl-$-a\any\)amino-1 -
pentylphenoxazin-3-one.
Example 4; Synthesis of 7-N-(L-pvroglutamyl)amino-2-chloro-l-pentylphenoxazin-
3-one and 7-N-(L-pyroglutamyl)amino-l-pentylphenoxazin-3-one
The protocol described in example 1 above was repeated, except that 0.516 g of
L-pyroglutamic acid was used in place of the N.Soc-L-alanine.
In order to recover the title compounds, silica column chromatography was
performed, elution being carried out with a mixture of DCM/MeOH (95:5). The first
spot corresponds to 7-N-(L-pyroglutamyl)amino-2-chloro-l-pentylphenoxazin-3-one in
the form of a brown solid and the second spot corresponds to 7-N-(L-pyroglutamyl)-
amino-1 -pentylphenoxazin-3-one in the form of a brown solid.
Example 5 ; Synthesis of 7-N-(N'-t-butoxvcarbonyl-$-si\any\)amino-l3,-dimethylphenoxazin-
3-one and of 7-N-(Ar-/-^M/Qjcvcflr6o/iv/-P-alanyl)amino-l,2,4-trimethylphenoxazin-
3-one
5.1. General procedure for the preparation of dimethoxybenzenes
In a dry round-bottomed, 2-necked flask equipped with a condenser, with a
magnetic stirrer bar and with a calcium chloride protection tube, hydroquinone (1 molar
equivalent) was dissolved in 50 ml of anhydrous dimethylformamide (DMF) and 2.2
molar equivalents of NaH were added in small amounts. After addition of the base and
when the H2 had stopped evolving, 4 molar equivalents of methyl iodide were added
dropwise in 15-20 min. Once the addition was complete, the reaction mixture was
stirred at 40°C for 2 hours. 200 ml of salt water was added to the flask and the resulting
mixture was extracted with diethyl ether (3 times 50 ml). The combined organic layers
were washed with water (twice 50 ml) and the product was dried over MgSO4. The
solvent was evaporated off under reduced pressure and the residue was subjected to
column chromatography.
5.1.1 1,4-Dimethoxy-2,3-dimethylbenzene
The process was carried out as described in point 5.1 above, using 1.957g
(0.01416 mol) of 2,3-dimethylhydroquinone. The product was isolated in the form of a
white solid (2.27 g, 80%) using a 95:5 mixture of light mineral spirit:diethyl ether.
5.1.2. 1,4-Dimethoxy-2 3.5 -trimethylbenzene
The process was carried out as described in point 5.1 above, using 2.175g
(0.01429 mol) of 2,3,5-trimethylhydroquinone. The product was isolated in the form of
a colorless oil (2.367 g, 92%).
5.2. Formylation of dimethoxybenzenes by means of the Duff reaction
1 equivalent of dimethoxybenzene was dissolved in 20ml of TFA and 1.05
equivalents or urotropin were added to the resulting solution. The reaction mixture was
brought to reflux for 2 hours under anhydrous conditions. The TFA was evaporated off
under reduced pressure, the residue was dissolved in 100 ml of ether and the organic
solution was washed with water (3 times 50 ml) and then dried over MgSCO4. The
solvent was evaporated off and the residue was subjected to column chromatography,
elution being carried out with an 80:20 mixture of light mineral spirit (60-80°C):diethyl
ether.
5.2.1. 2,5-Dimethoxy-3,4-dimethylbenzaldehyde
The process was carried out as described in point 5.2 above, using 2.270 g
(0.01366 mol) of l,4-dimethoxy-2,3-dimethylbenzene. The title product was isolated in
the form of a white solid (1.18 g, 44%).
5.2.2 2,5-Dimethoxv-3A6-trimethylbenzaldehyde
The process was carried out as described in point 5.2 above, using 2.274 g
(0.01262 mol) of l,4-dimethoxy-2,3,5-trimethylbenzene. The title product was isolated
in the form of a yellow solid (1.21 g, 46%).
5.3 General procedure for the preparation of phenols using Bayer-Villiger
oxidation
0.033 mol of dimethoxybenzaldehyde was dissolved in 50 ml of methanol and a
suspension of magnesium monoperoxyphthalate (MMPP) (0.018 mol) in 50ml of
20
methanol was added dropwise while keeping the reaction mixture at 0°C. Once the
addition was complete, the reaction mixture was stirred at ambient temperature for 4
hours. The resulting ester was hydrolyzed under basic conditions using 50 ml of 1M
NaOH. After 1 hour, three quarters of the methanol was removed under reduced
pressure, the excess base was neutralized with 1M HC1 and the pH was adjusted to 3.
The phenol was extracted in ethyl acetate (3 times 50 ml), the combined organic layers
were dried over MgSCO4, the solvent was evaporated off and the residue was subjected
to column chromatography.
5.3.1. 2,5-Dimethoxy-3,4-dimethylphenol
The process was carried out as described in point 5.3 above, using 1.126g
(5.797mmol) of 2,5-dimethoxy-3,4-dimethybenzaldehyde. The title product was
isolated in the form of a yellow oil (0.239 g, 23%) using, as eluent, a 60:40 mixture of
light mineral spirit (60-80°C):diethyl ether.
5.3.2. 2.5-Dimethoxv-3A6-trimethvlphenol
The process was carried out as described in point 5.3 above, using 1.205 g
(5.786mmol) of 2,5-dimethoxy-3,4,6-dimethybenzaldehyde. The title product was
isolated in the form of a white solid (0.856 g, 75%) using, as eluent, a 75:25 mixture of
light mineral spirit (60-80°C):diethyl ether.
5.4. General procedure for preparing diaryl ethers
1 molar equivalent of appropriate phenol was dissolved in 10ml of anhydrous
DMF and 1.1 molar equivalents of NaH were added in small amounts. After complete
development of the gas, the resulting sodium phenolate solution was stirred at ambient
temperature for 15 minutes. 1 molar equivalent of a solution of 2,5-
dinitrofiuorobenzene in 5 ml of anhydrous THF was added dropwise to the flask and
the reaction mixture was stirred for 2 hours. At the end, the content of the flask was
poured into 50 ml of water, the mixture was extracted with ether (3 times 50 ml) and
the combined organic layers were dried over MgSO4. The solvent was removed under
reduced pressure and the residue was subjected to column chromatography.
5.4.1 l-(2'.5'-Dmitrophenoxy)-3,4-dimethylbenzene
The process was carried out as described in point 5.4 above, using 0.293 g
(1.575 mmol) of 2,5-dinitrofluorobenzene and 0.287 g (1.575 mmol) of 2,5-dimethoxy21
3,4-dimethylphenol. The title product was obtained in the form of an orange solid
(0.415 g, 76%) after column chromatography using, as eluent, an 85:15 mixture of light
mineral spirit (60-80°C):ethyl acetate.
5.4.2 1 -(2\5'-dinitrophenoxy)-3 A6-trimethvlbenzene
The process was carried out as described in point 5.4 above, using 0.812 g
(4.362 mmol) of 2,5-dinitrofluorobenzene and 0.856 g (4.362 mmol) of 2,5-dimethoxy-
3,4,6-trimethylphenol. The title product was obtained in the form of a yellow solid
(1.412 g, 89%) after column chromatography using, as eluent, a 75:25 mixture of light
mineral spirit (60-80°C):diethyl ether.
5.5. General procedure for deprotecting hydroquinone methyl ethers
1 molar equivalent of dimethyl aryl ether was dissolved in 30 ml of anhydrous
DCM and the mixture was cooled to -78°C. 2.5 molar equivalents of BEr^ in hexane
(1 M) were added dropwise to the cooled solution of ether and the reaction product was
stirred at -78°C for 30 min. The mixture was then heated to ambient temperature and
stirred until the end of the reaction (followed by thin layer chromatography). The
reaction mixture was diluted with 10 ml of methanol at 0°C and was poured into 50 ml
of water. The organic layer was separated and the aqueous layer was washed with ethyl
acetate (3 times 25 ml). The combined organic layers were dried over MgS04. The
solvent was removed and the residue was subjected to column chromatography.
5.5.1. 1 -(2',5'-Dinitrophenoxy)-3,4-dimethyl-2,5-dihydroxybenzene
The title compound was not isolated, but it was formed and then reduced and
cyclized directly according to a reaction in the same container (see point 5.6.1. below).
5.5.2. l-(2'.5'-Dinitrophenoxy)-3.4.6-trimethvl-2,5-dihvdroxybenzene
The process was carried out as described in point 5.5 above, using 0.626 g
(1.728 mmol) of l-(2',5'-dinitrophenoxy)-2,5-dimethoxy-3,4,6-dimethybenzaldehyde.
The title product was isolated in the form of an orange solid (0.435 g, 75%) using, as
eluent, a 70:30 mixture of light mineral spirit (60-80°C):diethyl ether.
5.6. General procedure for preparing 7-aminophenoxazin-3-ones
1.3 mmol of dihydroxydiaryl ether were dissolved in 5 ml of methanol and Pd/C
5% catalyst (10% weight/weight) was added to the solution. The reaction mixture was
stirred at ambient temperature in the hydrogenation apparatus under a hydrogen
atmosphere for 4 hours. Silica was added to the flask (in sufficient amount in view of
the residue load to be introduced into the column chromatography) and the mixture was
vigorously stirred for a further 4 hours with free access to the air. At the end of the
oxidation, the solvent was removed and the residue was subjected to column
chromatography using an eluent gradient, starting from a 50:50 mixture of light mineral
spirit (60-80°C):ethyl acetate, then changing to a 25:75 mixture then a 0:100 mixture of
the same solvents. Finally, a 90:10 mixture of ethyl aceteate:methanol was used as
eluent.
5.6.1. 7-Amino-l.2-dimethylphenoxazin-3-one
The process was carried out as described in point 5.6 above, starting from
0.266 g (0.7636 mmol) of l-(2',5'-dinitrophenoxy)-3,4-dimethyl-2,5-dihydroxybenzene,
according to a reaction in the same container. The title product was obtained in the form
of a reddish-brown solid (0.125 g, 68%).
5.6.2.7 - Amino-1,2,4-trimethy Iphenoxazin- 3 -one
The process was carried out as in point 5.6 above, starting from 0.435 g
(1.3013 mmol) of l-(2',5'-dinitrophenoxy)-3,4,6-trimethyl-2,5-dihydroxybenzene. The
title product was obtained in the form of a reddish-brown solid (0.237 g, 72%).
5.7 General procedure for couplinR a peptide to the 7-aminophenoxazin-3-ones
0.4 mmol of 7-aminophenoxazin-3-one was dissolved in 5 ml of anhydrous
DMF in a small round-bottomed flask containing a magnetic stirrer bar, and 0.010 g of
Pd/C 5% catalyst was added to the solution. The flask was placed in a hydrogenation
apparatus at ambient temperature and a hydrogen atmosphere was maintained while
stirring the reaction mixture for 1 hour. It was possible to confirm complete reduction
by virtue of the fact that the solution changed color from deep purple to grayish-green.
In a separate flask, 0.089 g (0.4719 mmol) of N-t-Boc-a\anim, 0.072 g (0.4719 mmol)
of hydroxybenzotriazole (HOBt) and 0.07ml (0.4719 mmol) of
diisopropylcarbodiimide (DIG) were dissolved in 5 ml of anhydrous DCM and the
reaction mixture was stirred at ambient temperature for 1 hour. After this period, the
content of the second flask was introduced into the first flask (which contained the
reduced form of the 7-aminophenoxazin-3-one) by means of a syringe under an inert
atmosphere. The presence of oxygen from the air was avoided due to the very rapid
oxidation of the reactant. The mixture was stirred for a further 20 hours at ambient
temperature. The reaction mixture was filtered through celite and the solvent was
evaporated off. The residue was redissolved in 20 ml of ethyl acetate, and the organic
layer was washed with 20 ml of 1M HC1, 20 ml of 10% Na2CO3 and 20 ml of water.
The product was dried over MgSCO4, filtered, and evaporated under reduced pressure so
as to obtain a residue that was purified by column chromatography using a 30:70
mixture of light mineral spirit (60-80°C):ethyl acetate as eluent.
5.7.1 l-N-(N'-t-Butoxycarbonyl-$-a\ar\v\)ammo-1,2-dimethylphenoxazin-3-one
The process was carried out as described in point 5.7. above, using 0.110 g
(0.4578 mmol) of 7-amino-l,2-dimethylphenoxazin-3-one. The title product was
obtained in the form of a reddish-brown solid (0.104 g, 55%).
5.7.2 7-N-(N'-t-Butoxvcarbonvl-fi-almy\}ammoA,2A-tnmefaylphenoxazin-3-
one
The process was carried out as described in point 5.7. above, using O.lOOg
(0.3933 mmol) of 7-amino-l,2,4-trimethylphenoxazin-3-one. The title product was
obtained in the form of an orange solid (0.113 g, 68%).
5.8. Deprotection of the N-t-butoxycarbonyl group
0.2 mmol of the corresponding N-t-butoxycarbonyl-protected compound was
dissolved in 3 ml of anhydrous DCM and 1 ml of TFA was added to the solution. The
reaction mixture was stirred at ambient temperature until the end of the reaction
(followed by thin layer chromatography). The solvent and the excess TFA were
evaporated off under reduced pressure and the residue was purified by short column
chromatography using an eluent gradient, starting from a 50:50 mixture of light mineral
spirit (60-80°C):ethyl acetate, then changing to a 0:100 mixture of the same solvents.
Finally, a 90:10 mixture of ethyl acetate:methanol was used as eluent.
5.8.1. 7-N-(p-Alanvnamino-l,2-dimethylphenoxazin-3-one trifluoroacetate salt
The process was carried out as indicated in point 5.8. above, using 0.047 g
(0.1138 mmol) of 7-N-(N'-t-butoxycarbonyl-^alany\)amino-,2-dimQthy\phQrio\azm-
3-one. The title product was obtained in the form of a red solid (0.046 g, 95%).
5.8.2. 7-A-(p-Alanyl)amino-l.2.4rtrimethylphenoxazin-3-one trifluoroacetate
salt
The process was carried out as indicated in point 5.8. above, using 0.081 g
(0.1897mmol) of 7-N-(N'-t-butoxycarbonyl-p-alanyl)amino-l,2,4-
trimethylphenoxazin-3-one. The title product was obtained in the form of a red solid
(0.080 g, 96%).
Example 6 : Preparation of methyl 7-JV-(N'-t-butoxycarbonyl-P-alanyl)amino-lmethvl-
2-chlorophenoxazin-3-one-4-carboxyIate
1.76 g (10 mmol) of 1,4-dichlorobenzoquinoneimine were dissolved in 50 ml of
absolute ethanol with gentle stirring. 1.82 g (10 mmol) of methyl 4-methyl-2,6-
dihydroxybenzoate were added to this stirred solution. The stirred solution was gently
refluxed until the point where a considerable exothermia became apparent, requiring the
flask to be removed from the heat source. After the exothermia had decreased, the
reaction mixture was brought to reflux for a further 30 minutes and allowed to cool to
ambient temperature. After having left the reaction mixture at ambient temperature for
a further 3 hours, the solid product was recovered by suction filtration and washed with
a small amount of hot water followed by suctioning so as to obtain it in as dry a state as
possible, before drying in a desiccator under vacuum. The residue was subjected to
silica gel thin layer chromatography with ethyl acetate as the mobile phase. A
considerable amount of dark-colored base product and also the fluorescent pink
component were observed. The solid product was dissolved in ethyl acetate, filtered and
passed through a silica gel cone. The filtrate is essentially devoid of base product. The
solvent was removed under reduced pressure and the solid product was isolated.
The solid product was subjected to an aminoacylation using f-50C-(3-alanine, as
described above, so as to obtain the title compound.
Example 7; Synthesis of 7-N-C7V -f-6Ktocvcar/>o/iy/-B-alanyl)amino-6-methylphenoxazin-
3-one
7.1. Synthesis of N-acetyl-2-methvl-3-fluoroaniline
1.98 ml (27.78 mmol) of acetyl chloride were added, with stirring, to a solution
of 3.161 g (25.26 mmol of 2-methyl-3-fluoroaniline and 3.87 ml (27.78 mmol) of
triethylamine in 50 ml of DCM at 0°C. The solution was allowed to warm up to
ambient temperature and was stirred for 1 hour. The solution was washed with water (3
times 50 ml), the product was dried with MgSCO4 and the solvent was removed under
reduced pressure. After recrystallization from a mixture of mineral oil/ethyl acetate
(EtOac), 3.844 g (91%) of the title compound were obtained in the form of white
crystals.
7.2. Synthesis of N-acetvl-2-methvl-3-fluoro-4-m'troaniline
The compound obtained in point 7.1 above was reacted with a mixture of 5 ml
of concentrated sulfuric acid and of 5 ml of nitric acid in 10 ml of acetic acid at 18°C
for 1 hour. The reaction solution was subsequently diluted in 100 ml of water and was
extracted in ethyl acetate (EtOAc) (3 times 50 ml), and dried over MgSO4 and the
solvent was removed under vacuum. The title compound was isolated in the form of a
white solid (1.96 g, 71%).
7.3. Synthesis of 2-methvl-3-fluoro-4-m'troaniline
1.311 g (6.18 mmol) of the compound obtained in point 7.2. above were brought
to reflux in 5M hydrochloric acid for 2 hours. The solution was neutralized with sodium
carbonate and was then extracted with diethyl ether (3 times 50 ml) and dried over
MgSCO4, and the solvent was removed under vacuum. The residue was purified by
column chromatography using a 70:30 mixture of mineral spirit :EtOAc as eluent. The
title product was isolated in the form of a yellow solid (0.589 g, 94 %).
7.4. Synthesis of 2-fluoro-3.6-dinitrotoluene
A solution of 0.357 g (2.10 mmol) of the compound obtained in point 7.3. above
in 4 ml of acetic acid was added, dropwise, to a solution of 1.61 g (10.46 mmol) of
sodium perborate tetrahydrate in 11 ml of EtOAc, at 65°C, and the mixture was stirred
for 6 hours. The reaction solution was diluted in 50 ml of water and the mixture was
extracted in diethyl ether (3 times 20 ml) and dried over MgSO4, and the solvent was
removed under vacuum. The residue was purified by column chromatography using a
70:30 mixture of mineral spirit:trichloromethane as eluent, so as to obtain the title
product in the form of a yellow liquid (0.274 g, 65%).
7.5 Synthesis of 2.5-dimethoxyphenol
The process was carried out as indicated in point 5,3. above, using 5.53 g
(0.0333 mol) of 2,5-dimethoxybenzaldehyde. The title product was isolated in the form
of a yellow oil, using an 80:20 mixture of light mineral spirit (60-80°C):diethyl ether as
eluent (4.27 g, 83%).
7.6 Synthesis of l-(3\6'-dmitro-2'-methvlphenoxvV2,5-dimethoxvbenzene
The process was carried out as indicated in point 5.4. above, using 0.366 g
(1.83 mmol) of the 2-fluoro-3,6-dinitrotoluene prepared in point 7.4. above and 0.282 g
(1.83 mmol) of 2,5-dimethoxyphenol prepared in point 7.5. above. The title product
was isolated in the form of a yellow solid, using a 70:30 mixture of light mineral spirit
(60-80°C):diethyl ether as eluent (0.400 g, 65.5%).
7.7. Synthesis of the title compound
The title compound can be obtained as indicated in points 5.5. to 5.7. above.
Example 8 ; Detection of the L-alanine peptidase activity of Gram-negative
bacteria
The compounds, chlorinated or nonchlorinated, prepared in example 1, i.e. 7-N-
(N'-t-butoxycarbonyl-L-a\any\)ammo-2-ch\oro-l-penly\phenoxazm-3-one (chlorinated
L-alanyl compound) and 7-N-(N"-t-butoxycarbonyl-L-a\any\)amino-}-
pentylphenoxazin-3-one (nonchlorinated L-alanyl compound), which were deprotected
according to the protocol described in example 3, were used.
10 mg of each of the L-alanyl compounds were dissolved in 1 ml of
dimethylsulfoxide, and the mixture was added to 200 ml of molten Columbia agar at
50°C. The medium thus constituted was dispensed into Petri dishes (final concentration
of each substrate : 50.mg/l).
Strains from international collections or derived from the applicant's collection
were then inoculated, using a 10 ul calibrated loop, onto each medium, using calibrated
suspensions of 0.5 McFarland. All the strains were also inoculated onto Columbia agar
media without chromogenic substrate, as a growth control. All the cultures were
incubated for 24 to 48 h at 37°C.
The growth and coloration results obtained between 24 and 48 h of incubation
are given in table 1, in which G signifies growth, C signifies color, I signifies colorless,
the sign ++ signifies very good growth, the sign + signifies good growth of the strain,
the sign +/- signifies average growth of the strain and the sign - signifies absence of
growth of the strain.
(Table Removed)
The results in table 1 above show that the enzymatic substrate of the invention
makes it possible to detect all the bacterial strains since they all grow, but a
modification of coloration is observed only for the Gram - strains (strains 1 to 4 and 6
to 7), which also makes it possible to discriminate between the Gram- strains and the
Gram+ strains.
Example 9 ; Detection of the B-alanine peptidase activity of bacteria of the
Pseudomonas aerueinosa genus
To do this, the chlorinated or nonchlorinated p-alanine compounds prepared in
example 2, i.e. 7-N-(N'-t-butoxycarbonyl-fi-a\anyl)amino-2-ch\oroA-pQntylphenoxazm-
3-one (chlorinated beta-alanyl compound) and l-~N-(N'-t-butoxycarbonyl-$-
alanyl)amino-l-pentylphenoxazin-3-one (nonchlorinated beta-alanyl compound), which
were deprotected according to the protocol described in example 5, were used.
In addition, the Petri dishes were prepared and the strains were inoculated
according to the protocol described in example 5.
The coloration results between 24 and 48 h of incubation are indicated in table 2
below.
(Table Removed)
The results in table 2 above demonstrate that the compounds of the invention
make it possible to preferentially detect Pseudomonas aeruginosa bacteria
(development of a pale purple to purple coloration).
Example 10 ; Detection of pyroglutamvl peptidase activity
To do this, the chlorinated or nonchlorinated pyroglutamyl compounds prepared
in example 4, i.e. 7-N-(L-pyroglutamyl)amino-2-chloro-l-pentylphenoxazin-3-one
(chlorinated L-pyroglutamyl compound) and 7-N-(L-pyroglutamyl)amino-lpentylphenoxazin-
3-one (nonchlorinated L-pyroglutamyl compound), which were
deprotected according to the protocol described in example 5, were used.
In addition, the Petri dishes were prepared and the strains were inoculated
according to the protocol described in example 5.
The coloration results between 24 and 48 h of incubation are indicated in table 3
below.
(Table Removed)
The results in table 3 above demonstrate that the compounds of the invention
make it possible to preferentially detect Pseudomonas aeruginosa bacteria.
Example 11 : Detection of the P-alanine peptidase activity of bacteria of the
Pseudomonas aerusinosa genus
To do this, the p-alanine compounds prepared in examples 5 and 6, i.e. 7-N-(N'-
t-butoxycarbonyl-p-alanyl)amino-1,2-dimethylphenoxazin-3-one (b-ala-DMP), 7-A^-
(7V'-6wtoxycar6o«'/-p-alanyl)amino-l,2,4-trimethylphenoxazin-3-one (b-ala-TMP)
and 7-N-(N'-t-butoxycarbonyl-p-a\any\)ammo-1 -methyl-2-chloro-4-(oxo-1 -
methyl)phenoxazin-3-one (b-ala-MCMP), which were deprotected as described in the
previous examples, were used.
In addition, the Petri dishes were prepared and the strains were inoculated
according to the protocol described in example 7. The coloration results between 24
and 48 h of incubation are indicated in table 4 below.
(Table Removed)
The results in table 4 above demonstrate
make it possible to preferentially detect
that the compounds of the invention
Pseudomonas aeruginosa bacteria
(development of a pink-to-violet coloration). It may also be noted that the results can
vary in terms of color and color strength, just as they can in terms of sensitivity and
specificity in relation to the Pseudomonas aeruginosa species, according to the
substituents used and their position on the main ring, such that the use of these various
substrates can be envisioned in different specific applications depending on the
intended objective.




WE CLAIM:
1. A chromogenic enzymatic substrate, characterized in that it corresponds to formula (I) below:
(Formula Removed)
-R1 represent a hydrogen atom, a C1-C12 alkyl group, a C6-C14 aralkyl group, an aryl group, -
COOH, -COOR' or -NR"R"',
- R2 represents a hydrogen atom, a halogen atom, a C1-C12 alkyl group, -COOH or -COOR', at
least one of R1 and R2 being a hydrogen atom or a hologen atom,
-R3 represents a hydrogen atom, a halogen atom, -CN, -CONH2, -COOR' or -COR',
-R4, R5 and R6 each independently represent a hydrogen atom or a C1-C3 alkyl group, at least one
of R4, R5 and R6 being a hydrogen atom,
R' represents a hydrogen atom or a C1-C6 alkyl group,
-R" and R"' each independently represent a C1-C6 alkyl group, or else R" and R'", together with the nitrogen atom to which they are attached, form a heterocyclic ring containing one or more heteroatoms,
- A represents at least one amino acid, and
- X represents a blocking agent or nothing.

2. The chromogenic enzymatic substrate as claimed in claim 1, wherein R1 represents an alkyl, preferably C3-C6, group, and R2 represents a hydrogen atom.
3. The chromogenic enzymatic substrate as claimed in claim 1 or 2, wherein R1 represents a hydrogen atom and R2 represents an alkyl group, preferably an ethyl or hexyl group.

4. The chromogenic enzymatic substrate as claimed in any one of claims 1 to 3, wherein R3, R4,
R5 and R6 represent a hydrogen atom.
5. The chromogenic enzymatic substrate as claimed in any of the preceding claims, whenever used in a reaction medium for detecting and/or identifying and/or quantifying, in vitro, microorganisms expressing at least one peptidase activity.

Documents:

1508-DELNP-2007-Abstract-(03-07-2012).pdf

1508-delnp-2007-Abstract-(21-03-2013).pdf

1508-delnp-2007-abstract.pdf

1508-DELNP-2007-Claims-(03-07-2012).pdf

1508-delnp-2007-claims.pdf

1508-DELNP-2007-Correspondence Others-(03-07-2012).pdf

1508-delnp-2007-Correspondence Others-(06-08-2012).pdf

1508-delnp-2007-Correspondence Others-(21-03-2013).pdf

1508-delnp-2007-Correspondence-others (12-08-2008).pdf

1508-DELNP-2007-Correspondence-Others.pdf

1508-delnp-2007-Description (Complete)-(21-03-2013).pdf

1508-delnp-2007-description (complete).pdf

1508-DELNP-2007-Form-1-(03-07-2012).pdf

1508-delnp-2007-form-1.pdf

1508-delnp-2007-Form-18 (12-08-2008).pdf

1508-DELNP-2007-Form-2-(03-07-2012).pdf

1508-delnp-2007-Form-2-(21-03-2013).pdf

1508-delnp-2007-form-2.pdf

1508-DELNP-2007-Form-3-(03-07-2012).pdf

1508-delnp-2007-form-3.pdf

1508-delnp-2007-form-5.pdf

1508-DELNP-2007-GPA-(03-07-2012).pdf

1508-delnp-2007-gpa.pdf

1508-delnp-2007-pct-210.pdf

1508-delnp-2007-pct-304.pdf

1508-delnp-2007-pct-311.pdf

1508-DELNP-2007-Petition-137-(03-07-2012).pdf

abstract.jpg


Patent Number 264640
Indian Patent Application Number 1508/DELNP/2007
PG Journal Number 03/2015
Publication Date 16-Jan-2015
Grant Date 13-Jan-2015
Date of Filing 26-Feb-2007
Name of Patentee BIOMERIEUX
Applicant Address CHEMIN DE 1'ORME, F-69280 MARCY L'ETOILE, FRANCE
Inventors:
# Inventor's Name Inventor's Address
1 ROSALEEN JOY ANDERSON 8 THE WOODLANDS, KIBBLESWORTH, GATESHEAD NE 11 OYF, ENGLAND
2 PAUL WILLIAM GROUNDWATER 60 DOVEDALE ROAD SEABURN, SUNDERLAND SR6 8LT, ENGLAND
3 ARTHUR JAMES LOW HOUSE BRACKENTHWAITE, LOWESWATER, COCKERMOUTH, CUMBRIA CA 13 9UX, ENGLAND
4 DANIEL MONGET RESIDENCE DU MOULIN, 13, RUE DU MOULIN-DU -BUIS, F-01150 SAINT-SORLIN-EN-BUGEY, FRANCE
5 ANDREY VICTOROVICH ZAYTSEV 17 WHINSTONE MEWS, STATION ROAD, BENTON, NEWCASTLE UPON TYNE NE12 8AZ, ENGLAND
PCT International Classification Number C07K1/13
PCT International Application Number PCT/FR2005/002249
PCT International Filing date 2005-09-09
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 0409593 2004-09-10 France