Title of Invention

"PYRIDINE METHYLENE AZOLIDINONES AND USE THEREOF PHOSPHOINOSITIDE INHIBITORS"

Abstract The present invention is related to pyridine methylene azolidinone derivatives of Formula (I) in particular for the treatment and/or prophylaxis of autoimmune disorders and/or inflammatory diseases, cardiovascular diseases, neurodegenerative diseases, bacterial or viral infections, kidney diseases, platelet aggregation, cancer, transplantation, graft rejection or lung injuries.
Full Text Pyridine methylene azolidinones and use thereof
Field of the invention
This present invention is related to the use of pyridine methylene azolidinone derivatives of
Formula (I) for the treatment and/or prophylaxis of autoimmune disorders and/or
inflammatory diseases, cardiovascular diseases, neurodegenerative diseases, bacterial or
viral infections, allergy, asthma, pancreatitis, multi-organe failure, kidney diseases, platelet
aggregation, cancer, sperm motility, graft rejection or lung injuries. Specifically, the present
invention is related to pyridine methylene azolidinone derivatives for the modulation,
notably the inhibition of the activity or function of the phosphoinositide-3-kinases, PBKs.
Background of the invention
Phosphoinositide 3-kinases (PISKs) have a critical signalling role in cell proliferation, cell
survival, vascularization, membrane trafficking, glucose transport, neurite outgrowth,
membrane ruffling, superoxide production, actin reorganization and chemotaxis (Cantley,
2000, Science , 296, 1655-1657 and Vcmhaesebroeck et al, 2001, Annu. Rev. Biochem., 70,
The term PI3K is given to a family of lipid kinases which, in mammals, consists in eight
identified PISKs that are divided into three sub-families according to their structure and
their substrate specificity.
Class I group of PBKs consists in two sub-groups, Class IA and Class IB.
Class IA consists in a 85 kDa regulatory unit (responsible for protein-protein interactions
via the interaction of Src homology 2 (SH2) domain with phosphotyrosine residues of other
proteins) and a catalytic sub-unit of H0kDa. Three catalytic forms (plOOa, pi 10(3 and
p1108) and five regulatory isoforms (p85a, p85(3, p55y, p55a and p50a) exist for this
class.
Class IB are stimulated by G protein Py sub-units of heterodimeric G proteins. The only
characterized member of Class IB is PISKy (pi 10y catalytic sub-unit complexed with a
101-kDa regulatory protein, p101).
Class II PDKs comprises a, P and y isoforms, which are approximately of 170 kDa and
characterized by the presence of a C-terminal C2 domain.
Class III PISKs includes the phosphatidylinositol specific 3-kinases.
The evolutionary conserved isoforms pi 10a and (3 are ubiquitously expressed, while 8 and
y are more specifically expressed in the haematopoetic cell system, smooth muscle cells,
myocytes and endothelial cells (Vanhaesebroeck et al, 1997, Trends Biochem Sci., 22(7),
267-72). Their expression might also be regulated in an inducible manner depending on the
cellular-, tissue type and stimuli as well as disease context.
PISKs are enzymes involved in phospholipid signalling and are activated in response to a
variety of extra-cellular signals such as growth factors, mitogens, integrins (cell-cell
interactions) hormones, cytokines, viruses and neurotransmitters and also by intra-cellular
cross regulation by other signalling molecules (cross-talk, where the original signal can
activate some parallel pathways that in a second step transmit signals to PBKs by intracellular
signalling events), such as small GTPases, kinases or phosphatases for example.
Phosphatidylinositol (Ptdlns) is the basic building block for the intracellular inositol lipids
in eukaryotic cells, consisting of D-myo-inositol-1-phosphate (InsIP) linked via its
phosphate group to diacylglycerol. The inositol head group of Ptdlns has five free hydroxy
groups and three of these are found to be phosphorylated in cells in different combinations.
Ptdlns and its phosphorylated derivatives are collectively referred as inositol phospholipids
or phosphoinositides (Pis). Eight PI species have been documented in eukaryotic cells
(Vanhaesebroeck et al., 2001, above). Pis all reside in membranes and are substrates for
kinases, phosphatases and lipases.In vitro, PISKs phosphorylate the 3-hydroxyl group of the inositol ring in three different
substrates: phosphatidylinositol (Ptdlns), phosphatidylinositol-4-phosphate (PI(4)P) and
phosphatidylinositol-4,5-biphosphate (PI(4,5)P2), respectively generating three lipid
products, namely phosphatidylinositol 3-monophosphate (PI(3)P), phosphatidylinositol 3,4-
bisphosphate (PI(3,4)P2) and phosphatidylinositol 3,4,5-trisphosphate (PI(3,4,5)P3 (see
Scheme A below).
Inositol ring
Ptdlns (Phosphatidylinositol)
PI(3)P (Phosphatidylinositol 3-monophosphate)
Scheme A
The preferred substrate for Class I PISKs is PI(4,5)P2. Class II PIKs have a strong
prefererence for Ptdlns as substrate over PI(4)P and PI(4,5)P2. Class III PISKs can only use
Ptdlns as substrate in vivo and are likely to be responsible for the generation of most PI(3)P
in cells (Vanhaesebroeck et al, 2001, above).
The phosphoinositides intracellular signalling pathway begins with the binding of a
signalling molecule (extracellular ligands, stimuli, receptor dimerization, transactivation by
heterologous receptor (e.g. receptor tyrosine kinase)) to a G-protein linked transmembrane
receptor integrated into the plasma membrane resulting in the activation of PISKs.
Once activated, PISKs convert the membrane phospholipid PI(4,5)P2 into Pl(3,4,5)p3 which
in turn can be further converted into another 3' phosphorylated form of phosphoinositides
by 5'-specific phosphoinositide phosphatases, thus PI3K enzymatic activity results either
directly or indirectly in the generation of two 3'-phosphoinositide sub-types that function as
second messengers in intra-cellular signal transduction (Leslie et al, 2001, Chem. Rev.
101(8) 2365-80; Katso et al, 2001, Annu. Rev. Cell Dev. Biol 1, 615-75 and Taker et al,
2002, CellMol Life Sci. 59(5) 761-79).
The role as second messengers of phosphorylated products of Ptdlns act is involved in a
variety of signal transduction pathways, including those essential to cell proliferation, cell
differentiation, cell growth, cell size, cell survival, apoptosis, adhesion, cell motility, cell
migration, chemotaxis, invasion, cytoskeletal rearrangement, cell shape changes, vesicle
trafficking and metabolic pathway (Stein, 2000, Mol. Med. Today 6(9) 347-57).
Chemotaxis - the directed movement of cells toward a concentration gradient of chemical
attractants, also called chemokines is involved in many important diseases such as
inflammation/auto-immunity, neurodegeneration, angiogenesis, invasion/metastasis and
wound healing (Wyman et al, 2000, Immunol Today 21(6) 260-4; Hirsch et al, 2000,
Science 287(5455) 1049-53; Hirsch et al, 2001, FASEB J. 15(11) 2019-21 and Gerard et
al, 2001, Nat Immunol 2(2) 108-15).
PI3-kinase activation, is therefore believed to be involved in a range of cellular responses
including cell growth, differentiation and apoptosis (Parker et al, 1995, Current Biology,
5, 577-99; Yao et al, 1995, Science, 267, 2003-05).
Recent biochemical studies revealed that, Class I PDKs (e.g. Class IB isoform PI3Ky) are
dual-specific kinase enzymes, i.e. they display both lipid kinase activity (phosphorylation
of phospho-inositides) as well as protein kinase activity, as they are able to induce the
phosphorylation of other protein as substrates, including auto-phosphorylation as intramolecular
regulatory mechanism.
PISKs appear to be involved in a number of aspects of leukocyte activation. A p85-
associated PI3-kinase activity has been shown to physically associate with the cytoplasmic
domain of CD28, which is an important co-stimulatory molecule for the activation of Tcells
in response to antigen (Pages et al, 1994, Nature, 369, 327-29). These effects are
linked to increases in the transcription of a number of genes including interleukin-2 (IL-2),
an important T cell growth factor (Fraser et al, 1991, Science, 251, 313-16). Mutation of
CD28 such that it can longer interact with PI3-kinase leads to a failure to initiate IL-2
production, suggesting a critical role for PI3-kinase in T cell activation.
Cellular processes in which PI3Ks play an essential role include suppression of apoptosis,
reorganization of the actin skeleton, cardiac myocyte growth, glycogen synthase
stimulation by insulin, TNFa-mediated neutrophil priming and superoxide generation, and
leukocyte migration and adhesion to endothelial cells.
PI3Ky has been identified as a mediator of G beta-gamma-dependent regulation of JNK
activity wherein G beta-gamma are subunits of heterotrimeric G proteins (Lopez-Ilasaca et
al., 1998, J. Biol. Chem. 273(5) 2505-8).
Recently, it has been described that PI3Ky relays inflammatory signals through various
G(i)-coupled receptors (Laffargue et al, 2002, Immunity 16(3) 441-51) and its central to
mast cell function, stimuli in context of leukocytes, immunology includes cytokines,
chemokines, adenosines, antibodies, integrins, aggregation factors, growth factors, viruses
or hormones for example (Lawlor et al, 2001, J. Cell ScL, 114 (Pt 16) 2903-1 and
Stephens et al, 2002, Curr. Opinion Cell Biol. 14(2), 203-13).
Specific inhibitors against individual members of a family of enzymes provide valuable
tools for deciphering functions of each enzyme.
Two compounds, LY294002 and wortmannin (cf.hereinafter), have been widely used as
PI3-kinase inhibitors. These compounds are non-specific PI3K inhibitors, as they do not
distinguish among the four members of Class I PI3-kinases.
LY 294002 Wortmannin
ICso values of wortmannin against each of the various Class I PI3-kinases are in the range
of 1-10 nM and ICso values for LY294002 against each of these PI3-kinases are about 15-
20 uM (Fruman et al., 1998, Ann. Rev. Biochem., 67, 481-507), also 5-10 mM on CK2
protein kinase and some inhibitory activity on phospholipases.
Wortmannin is a fungal metabolite which irreversibly inhibits PI3K activity by binding
covalently to the catalytic domain of this enzyme. Inhibition of PI3K activity by
wortmannin eliminates the subsequent cellular response to the extracellular factor (Thelen
et al, 1994, Proc. Natl. Acad. Sci. USA, 91, 4960-64). Experiments with wortmannin, show
that PI3K activity in cells of hematopoietic lineage, particularly neutrophils, monocytes,
and other types of leukocytes, is involved in many of the non-memory immune response
associated with acute and chronic inflammation.
Based on studies using wortmannin, there is evidence that PI3-kinase function is also
required for some aspects of leukocyte signaling through G-protein coupled receptors
(Thelen et al., 1994). Morever, it has been shown that wortmannin and LY294002 block
neutrophil migration and superoxide release. However, in as much as these compounds do
not distinguish among the various isofprms of PI3K, it remains unclear which particular
PI3K isoform or isoforms are involved in these phenomena.
Some results have indicated that PI3K inhibitors, for example, LY294002, can increase thein vivo antitumor activity of certain cytotoxic agents (e.g. paclitaxel) (Grant, 2003, IDrugs,6(10), 946-948).Recently, thiazolidine derivatives have been recently developed as PI3K inhibitors (WO
2004/007491; WO 2004/056820; WO 2004/052373).
WO 2004/007491 discloses azolidinedione-vinyl fused-benzene derivatives of the
following structure:
WO 2004/056820 discloses benzoxazine derivatives of the following structure:
WO 2004/052373 discloses benzoxazin-3-ones derivatives of the following structure:
The high relevance of the PI3K pathway in some widely spread diseases stresses the need
to develop inhibitors, including selective inhibitors, of PIKs.
Summary of the invention
It is an object of the invention to provide substances which are suitable for the treatment
and/or prevention of disorders related to phosphoinositide-3-kinases, PI3Ks.
It is also an object of the present invention to provide substances which are suitable for the
treatment and/or prevention of auto-immune and/or inflammatory disorders.
It is also an object of the present invention to provide substances which are suitable for the
treatment and/or prevention of cardiovascular diseases.
It is also an object of the present invention to provide substances which are suitable for the
treatment and/or prevention of neurodegenerative disorders.
It is also an object of the present invention to provide substances which are suitable for the
treatment and/or prevention of a disorder selected from bacterial and viral infections,
kidney diseases, platelet aggregation, cancer, transplantation, graft rejection, lung injuries,
respiratory diseases and ischemic conditions.
It is notably an object of the present invention to provide chemical compounds which are
able to modulate, especially inhibit the activity or function of phosphoinositide-3-kinases,
PI3Ks in disease states in mammals, especially in humans.
It is furthermore an object of the present invention to provide a new category of
pharmaceutical formulations for the treatment of and/or diseases mediated selected from
auto-immune, inflammatory disorders, cardiovascular diseases, neurodegenerative
disorders, bacterial and viral infections, kidney diseases, platelet aggregation, cancer,
transplantation, graft rejection, lung injuries, respiratory diseases and ischemic conditions.
It is furthermore an object of the present invention to provide a method for the treatment
and/or prevention of disorders selected from auto-immune, inflammatory disorders,
cardiovascular diseases, neurodegenerative disorders, bacterial and viral infections, kidney
diseases, platelet aggregation, cancer, transplantation, graft rejection or lung injuries,
respiratory diseases and ischemic conditions.
In a first aspect, the invention provides pyridine methylene azolidinone derivatives of
Formula (I):
wherein A, R1, R2, X, Y and n are defined in the detailed description below.
In a second aspect, the invention provides a compound according to Formula (I) for use as a
medicament.
In a third aspect, the invention provides a use of a compound according to Formula (I) for
the preparation of a pharmaceutical composition for the treatment of a disorder selected
from auto-immune, inflammatory disorders, cardiovascular diseases, neurodegenerative
disorders, bacterial and viral infections, kidney diseases, platelet aggregation, cancer,
transplantation, graft rejection or lung injuries, respiratory diseases and ischemic conditions
and other diseases and disorders associated with the phosphoinositide-3-kinases, PI3Ks,
comprising PI3K a and y.
In a fourth aspect, the invention provides a pharmaceutical composition comprising at least
one a compound according to Formula (I) and a pharmaceutically acceptable carrier,
diluent or excipient thereof.
In a fifth aspect, the invention provides a method for treating a patient suffering from a
disorder selected from auto-immune, inflammatory disorders, cardiovascular diseases,
neurodegenerative disorders, bacterial and viral infections, kidney diseases, platelet
aggregation, cancer, transplantation, graft rejection or lung injuries, respiratory diseases and
ischemic conditions and other diseases and disorders associated with the phosphoinositide10
3-kinases, PBKs. The method comprises administering a compound according to Formula
(I).
In a sixth aspect, the invention provides a method of synthesis of a compound according to
Formula (I).
In a seventh aspect, the invention provides compounds according to Formula (II).
Detailed description of the invention:
The following paragraphs provide definitions of the various chemical moieties that make
up the compounds according to the invention and are intended to apply uniformly throughout
the specification and claims unless an otherwise expressly set out definition provides a
broader definition.
"Ci-Ce -alkyl" refers to monovalent alkyl groups having 1 to 6 carbon atoms. This term is
exemplified by groups such as methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, tertbutyl,
n-hexyl and the like. By analogy, Ci-Ci2 -alkyl refers to monovalent alkyl groups
having 1 to 12 carbon atoms, including methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl,
tert-buty\, n-hexyl, heptyl, octyl, nonyl, decly, undecyl, dodecyl and the like
"Aryl" refers to an unsaturated aromatic carbocyclic group of from 6 to 14 carbon atoms
having a single ring (e.g., phenyl) or multiple condensed rings (e.g., naphthyl). Aryl include
phenyl, naphthyl, phenantrenyl and the like.
"Ci-Ce-alkyl aryl" refers to Ci-Ce-alkyl groups having an aryl substituent, including benzyl,
phenethyl and the like.
"Heteroaryl" refers to a monocyclic heteroaromatic, or a bicyclic or a tricyclic fused-ring
heteroaromatic group. Particular examples of heteroaromatic groups include optionally
substituted pyridyl, pyrrolyl, pyrimidinyl, furyl, thienyl, imidazolyl, oxazolyl, isoxazolyl,
thiazolyl, isothiazolyl, pyrazolyl, 1,2,3-triazolyl, 1,2,4-triazolyl, 1,2,3-oxadiazolyl, 1,2,4-
oxadia-zolyl, 1,2,5-oxadiazolyl, l,3,4-oxadiazolyl,l,3,4-triazinyl, 1,2,3-triazinyl,
benzofuryl, [2,3-dihydro]benzofuryl, isobenzofuryl, benzothienyl, benzotriazolyl,
isobenzothienyl, indolyl, isoindolyl, 3H-indolyl, benzimidazolyl, imidazo[l,2-a]pyridyl,
benzothiazolyl, benzoxa-zolyl, quinolizinyl, quinazolinyl, pthalazinyl, quinoxalinyl,
cinnolinyl, napthyridinyl, pyrido[3,4-b]pyridyl, pyrido[3,2-b]pyridyl, pyrido[4,3-b]pyridyl,
quinolyl, isoquinolyl, tetrazolyl, 5,6,7,8-tetrahydroquinolyl, 5,6,7,8-tetrahydroisoquinolyl,
purinyl, pteridinyl, carbazolyl, xanthenyl or benzoquinolyl.
"C]-C6-alkyl heteroaryl" refers to Ci-C6-alkyl groups having a heteroaryl substituent,
including 2-furylmethyl, 2-thienylmethyl, 2-(lH-indol-3-yl)ethyl and the like.
"C2-C6-alkenyl" refers to alkenyl groups preferably having from 2 to 6 carbon atoms and
having at least 1 or 2 sites of alkenyl unsaturation. Preferable alkenyl groups include
ethenyl (-CH=CH2), n-2-propenyl (allyl, -CH2CH=CH2) and the like.
"C2-C6-alkenyl aryl" refers to C2-C6-alkenyl groups having an aryl substituent, including 2-
phenylvinyl and the like.
"C2-C6-alkenyl heteroaryl" refers to C2-C6-alkenyl groups having a heteroaryl substituent,
including 2-(3-pyridinyl)vinyl and the like.
"C2-C6-alkynyl" refers to alkynyl groups preferably having from 2 to 6 carbon atoms and
having at least 1-2 sites of alkynyl unsaturation, preferred alkynyl groups include ethynyl
(-CsCH), propargyl (-CH2OCH), and the like.
"C2-C6-alkynyl aryl" refers to C2-C6-alkynyl groups having an aryl substituent, including
phenylethynyl and the like.
"C2-C6-alkynyl heteroaryl" refers to C2-Ce-alkynyl groups having a heteroaryl substituent,
including 2-thienylethynyl and the like.
"C3-Cg-cycloalkyl" refers to a saturated carbocyclic group of from 3 to 8 carbon atoms
having a single ring (e.g., cyclohexyl) or multiple condensed rings (e.g., norbornyl). Cs-Cgcycloalkyl
include cyclopentyl, cyclohexyl, norbornyl and the like.
"Heterocycloalkyl" refers to a Cs-Cg-cycloalkyl group according to the definition above, in
which up to 3 carbon atoms are replaced by heteroatoms chosen from the group consisting
of O, S, NR, R being defined as hydrogen or methyl. Heterocycloalkyl include pyrrolidine,
piperidine, piperazine, 1-methylpiperazine, morpholine, tetrahydrofurane and the like.
"Ci-Ce-alkyl cycloalkyl" refers to Ci-Ce-alkyl groups having a cycloalkyl substituent,
including cyclohexylmethyl, cyclopentylpropyl, and the like.
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"Ci-Ce-alkyl heterocycloalkyl" refers to Ci-Ce-alkyl groups having a heterocycloalkyl
substituent, including 2-(l-pyrrolidinyl)ethyl, morpholinylmethyl, morpholinylethyl,
morpholinylpropyl, piperidinylethyl, tetrahydrofuranylmethyl and the like.
"Carboxy" refers to the group -C(0)OH.
"Ci-Ce-alkyl carboxy" refers to Ci-Cg-alkyl groups having an carboxy substituent,
including 2-carboxyethyl and the like.
"Acyl" refers to the group -C(O)R where R includes "Ci-C6-alkyl", "aryl", "heteroaryl",
"C3-C8-cycloalkyl", "Heterocycloalkyl", "Ci-C6-alkyl aryl" or "Ci-C6-alkyl heteroaryl".
"Ci-Ce-alkyl acyl" refers to Ci-Ce-alkyl groups having an acyl substituent, including 2-
acetylethyl and the like.
"Aryl acyl" refers to aryl groups having an acyl substituent, including 2-acetylphenyl and
the like.
"Heteroaryl acyl" refers to hetereoaryl groups having an acyl substituent, including 2-
acetylpyridyl and the like.
"C3-C8-(hetero)cycloalkyl acyl" refers to 3 to 8 memebered cycloalkyl or heterocycloalkyl
groups having an acyl substituent.
"Acyloxy" refers to the group -OC(O)R where R includes H, "d-C6-alkyl", "C2-C6-
alkenyl", "C2-C6-alkynyl", "C3-C8-cycloalkyl", heterocycloalkyl"heterocycloalkyl", "aryl",
"heteroaryl", "C,-C6-alkyl aryl" or "CrC6-alkyl heteroaryl", "C2-C6-alkenyl aryl", "C2-C6-
alkenyl heteroaryl", "C2-C6-alkynyl aryl", "C2-C6-alkynylheteroaryl", "d-C6-alkyl
cycloalkyl", "Ci-C6-alkyl heterocycloalkyl".
"Ci-C6-alkyl acyloxy" refers to Ci-Ce-alkyl groups having an acyloxy substituent,
including amino-propionic acid ethyl ester and the like.
"Alkoxy" refers to the group -O-R where R includes "Ci-C6-alkyl" or "aryl" or "heteroaryl"
or "Ci-Ce-alkyl aryl" or "Ci-C6-alkyl heteroaryl". Preferred alkoxy groups include by
way of example, methoxy, ethoxy, phenoxy and the like.
"Ci-C6-alkyl alkoxy" refers to Ci-C6-alkyl groups having an alkoxy substituent, including
methoxy, methoxyethyl and the like.
"Alkoxycarbonyl" refers to the group -C(O)OR where R includes H, "Ci-C6-alkyl" or
"aryl" or "heteroaryl" or "C,-C6-alkyl aryl" or "d-C6-alkyl heteroaryl".
13
"Ci-C6-alkyl alkoxycarbonyl" refers to Ci-C5-alkyl groups having an alkoxycarbonyl
substituent, including 2-(benzyloxycarbonyl)ethyl and the like.
"Aminocarbonyl" refers to the group -C(O)NRR' where each R, R' includes independently
hydrogen or Ci-C6-alkyl or aryl or heteroaryl or "CrC6-alkyl aryl" or "d-C6-alkyl heteroaryl".
"Ci-Ce-alkyl aminocarbonyl" refers to Ci-Ce-alkyl groups having an aminocarbonyl
substituent, including 2-(dimethylaminocarbonyl)ethyl and the like.
"Acylamino" refers to the group -NRC(O)R' where each R, R' is independently hydrogen,
"CrCe-alkyl", "C2-C6-alkenyl", "C2-C6-alkynyl", "C,-C8-cycloalkyl", "heterocycloalkyl",
"aryl", "heteroaryl", "C,-C6-alkyl aryl" or "C,-C6-alkyl heteroaryl", "C2-C6-alkenyl aryl",
"C2-C6-alkenyl heteroaryl", "C2-C6-alkynyl aryl", "C2-C6-alkynylheteroaryl", "d-C6-alkyl
cycloalkyl", "CrC6-alkyl heterocycloalkyl".
"Ci-Ce-alkyl acylamino" refers to Ci-Ce-alkyl groups having an acylamino substituent,
including 2-(propionylamino)ethyl and the like.
"Ureido" refers to the group -NRC(O)NR'R" where each R, R', R" is independently
hydrogen, "C,-C6-alkyl", "C2-C6-alkenyl", "C2-C6-alkynyl", "C3-C8-cycloalkyl",
"heterocycloalkyl", "aryl", "heteroaryl", "CrC6-alkyl aryl" or "C,-C6-alkyl heteroaryl",
"C2-C6-alkenyl aryl", "C2-C6-alkenyl heteroaryl", "C2-C6-alkynyl aryl", "C2-C6-
alkynylheteroaryl", "Ci-C6-alkyl cycloalkyl", "d-C6-alkyl heterocycloalkyl", and where R'
and R", together with the nitrogen atom to which they are attached, can optionally form a
3-8-membered heterocycloalkyl ring.
"Ci-Ce-alkyl ureido" refers to Q-Ce-alkyl groups having an ureido substituent, including 2-
(A^-methylureido)ethyl and the like.
"Carbamate" refers to the group -NRC(O)OR' where each R, R' is independently
hydrogen, "C,-C6-alkyl", "C2-C6-alkenyl", "C2-C6-alkynyl", "Cj-Cj-cycloalkyl",
"heterocycloalkyl", "aryl", "heteroaryl", "C]-C6-alkyl aryl" or "C,-C6-alkyl heteroaryl",
"C2-C6-alkenyl aryl", "C2-C6-alkenyl heteroaryl", "C2-C6-alkynyl aryl", "C2-C6-
alkynylheteroaryl", "Ci-C6-alkyl cycloalkyl", "C,-C6-alkyl heterocycloalkyl".
"Amino" refers to the group -NRR' where each R,R' is independently hydrogen or "Ci-Cealkyl"
or "aryl" or "heteroaryl" or "C,-C6-alkyl aryl". or "Ci-C6-alkyl heteroaryl", or
14
"cycloalkyl", or "heterocycloalkyl", and where R and R', together with the nitrogen atom to
which they are attached, can optionally form a 3-8-membered heterocycloalkyl ring.
"Ci-Ce-alkyl amino" refers to Ci-C5-alkyl groups having an amino substituent, including 2-
(l-pyrrolidinyl)ethyl and the like.
"Ammonium" refers to a positively charged group -N+RR'R", where each R,R',R" is
independently "C,-C6-alkyl" or "C,-C6-alkyl aryl" or "C,-C6-alkyl heteroaryl", or
"cycloalkyl", or "heterocycloalkyl", and where R and R', together with the nitrogen atom to
which they are attached, can optionally form a 3-8-membered heterocycloalkyl ring.
"d-Ce-alkyl ammonium" refers to d-Ce-alkyl groups having an ammonium substituent,
including 2-(l-pyrrolidinyl)ethyl and the like.
"Halogen" refers to fluoro, chloro, bromo and iodo atoms.
"Sulfonyloxy" refers to a group -OSO2-R wherein R is selected from H, "Ci-C6-alkyl",
"Ci-Ce-alkyl" substituted with halogens, e.g., an -OS02-CF3 group, "C2-C6-alkenyl", "C2-
C6-alkynyl", "C3-C8-cycloalkyl", "heterocycloalkyl", "aryl", "heteroaryl", "C,-C6-alkyl
aryl" or "d-C6-alkyl heteroaryl", "C2-C6-alkenyl aryl", "C2-C6-alkenyl heteroaryl", "C2-
C6-alkynyl aryl", "C2-C6-alkynylheteroaryl", "C,-C6-alkyl cycloalkyl", "Ci-C6-alkyl
heterocycloalkyl".
"Ci-Ce-alkyl sulfonyloxy" refers to Cj-Cs-alkyl groups having a sulfonyloxy substituent,
including 2-(methylsulfonyloxy)ethyl and the Ijke.
"Sulfonyl" refers to group "-SO2-R" wherein R is selected from H, "aryl", "heteroaryl",
"Ci-C6-alkyl", "d-C6-alkyl" substituted with halogens, e.g., an -SO2-CF3 group, "C2-C6-
alkenyl", "C2-C6-alkynyl", "C3-C8-cycloalkyl", "heterocycloalkyl", "aryl", "heteroaryl",
"C,-C6-alkyl aryl" or "C,-C6-alkyl heteroaryl", "C2-C6-alkenyl aryl", "C2-C6-alkenyl
heteroaryl", "C2-C6-alkynyl aryl", "C2-C6-alkynylheteroaryl", "d-C6-alkyl cycloalkyl",
"Ci-C6-alkyl heterocycloalkyl".
"d-Ce-alkyl sulfonyl" refers to d-Cs-alkyl groups having a sulfonyl substituent, including
2-(methylsulfonyl)ethyl and the like.
"Sulfmyl" refers to a group "~-S(O)-R" wherein R is selected from H, "d-C6-alkyl", "d-
C6-alkyl" substituted with halogens, e.g., a -SO-CF3 group, "C2-C6-alkenyl", "C2-C6-
alkynyl", "C3-C8-cycloalkyl", "heterocycloalkyl", "aryl", "heteroaryl", "d-C6-alkyl aryl"
15
or "Ci-Ce-alkyl heteroaryl", "C2-C6-alkenyl aryl", "C2-C6-alkenyl heteroaryl", "C2-C6-
alkynyl aryl", "C2-C6-alkynylheteroaryl", "C,-C6-alkyl cycloalkyl", "d-C6-alkyl
heterocycloalkyl".
"C]-C6-alkyl sulfmyl" refers to CrC5-alkyl groups having a sulfmyl substituent, including
2-(methylsulfinyl)ethyl and the like.
"Sulfanyl" refers to groups -S-R where R includes H, "Ci-C6-alkyl", "Ci-C6-alkyl"
substituted with halogens, e.g., a -SO-CF3 group, "C2-C6-alkenyl", "C2-C6-alkynyl", "C3-
Cs-cycloalkyl", "heterocycloalkyl", "aryl", "heteroaryl", "Ci-C6-alkyl aryl" or "C,-C6-alkyl
heteroaryl", "C2-C6-alkenyl aryl", "C2-C6-alkenyl heteroaryl", "C2-C6-alkynyl aryl", "C2-
C6-alkynylheteroaryl", "Ci-C6-alkyl cycloalkyl", "CrC6-alkyl heterocycloalkyl". Preferred
sulfanyl groups include methylsulfanyl, ethylsulfanyl, and the like.
"Ci-Ce-alkyl sulfanyl" refers to C]-C5-alkyl groups having a sulfanyl substituent, including
2-(ethylsulfanyl)ethyl and the like.
"Sulfonylamino" refers to a group -NRSOZ-R' where each R, R' includes independently
hydrogen, "C,-C6-alkyr, "C2-C6-alkenyl", "C2-C6-alkynyl", "C,-Crcycloalkyl",
"heterocycloalkyl", "aryl", "heteroaryl", "Ci-C6-alkyl aryl" or "C|-C6-alkyl heteroaryl",
"C2-C6-alkenyl aryl", "C2-C6-alkenyl heteroaryl", "C2-C6-alkynyl aryl", "C2-C6-
alkynylheteroaryl", "Ci-C6-alkyl cycloalkyl", "C,-C6-alkyl heterocycloalkyl".
"Ci-Ce-alkyl sulfonylamino" refers to CpCs-alkyl groups having a sulfonylamino
substituent, including 2-(ethylsulfonylamino)ethyl and the like.
"Aminosulfonyl" refers to a group -SO2-NRR' where each R, R' includes independently
hydrogen, "C,-C6-alkyr, "C2-C6-alkenyl", "C2-C6-alkynyl", "C3-Cg-cycloalkyl",
"heterocycloalkyl", "aryl", "heteroaryl", "d-C6-alkyl aryl" or "d-C6-alkyl heteroaryl",
"C2-C6-alkenyl aryl", "C2-C6-alkenyl heteroaryl", "C2-C6-alkynyl aryl", "C2-C6-
alkynylheteroaryl", "d-C6-alkyl cycloalkyl", "d-C6-alkyl heterocycloalkyl".
"Ci-Ce-alkyl aminosulfonyl" refers to Ci-Ce-alkyl groups having an aminosulfonyl
substituent, including 2-(cyclohexylaminosulfonyl)ethyl and the like.
"Substituted or unsubstituted": Unless otherwise constrained by the definition of the individual
substituent, the above set out groups, like "alkenyl", "alkynyl", "aryl", "heteroaryl",
"cycloalkyl", "heterocycloalkyl" etc. groups can optionally be substituted with from 1 to 5
16
substituents selected from the group consisting of "Ci-C6-alkyl", "C2-C6-alkenyr, "C2-C6-
alkynyl", "cycloalkyl", "heterocycloalkyl", "C,-C6-alkyl aryl", "CrC6-alkyl heteroaryl",
"Ci-C6-alkyl cycloalkyl", "Ci-C6-alkyl heterocycloalkyl", "amino", "ammonium", "acyl",
"acyloxy", "acylamino", "aminocarbonyl", "alkoxycarbonyl", "ureido", "aryl",
"carbamate", "heteroaryl", "sulfmyl", "sulfonyl", "alkoxy", "sulfanyl", "halogen",
"carboxy", trihalomethyl, cyano, hydroxy, mercapto, nitro, and the like.
"Substituted" refers to groups substituted with from 1 to 5 substituents selected from the
group consisting of "C,-C6-alkyP', "C2-C6-alkenyl", "C2-C6-alkynyl", "cycloalkyl",
"heterocycloalkyl", "CrC6-alkyl aryl", "C,-C6-alkyl heteroaryl", "C,-C6-alkyl cycloalkyl",
"Ci-Ce-alkyl heterocycloalkyl", "amino", "aminosulfonyl", "ammonium", "acyl amino",
"amino carbonyl", "aryl", "heteroaryl", "sulfmyl", "sulfonyl", "alkoxy", "alkoxy
carbonyl", "carbamate", "sulfanyl", "halogen", trihalomethyl, cyano, hydroxy, mercapto,
nitro, and the like
"Pharmaceutically acceptable salts or complexes" refers to salts or complexes of the belowidentified
compounds of Formula (I) that retain the desired biological activity. Examples of
such salts include, but are not restricted to acid addition salts formed with inorganic acids
(e.g., hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, nitric acid, and
the like), and salts formed with organic acids such as acetic acid, oxalic acid, tartaric acid,
succinic acid, malic acid, fumaric acid, maleic acid, ascorbic acid, benzoic acid, tannic acid,
pamoic acid, alginic acid, polyglutamic acid, naphthalene sulfonic acid, naphthalene
disulfonic acid, and poly-galacturonic acid. Said compounds can also be administered as
pharmaceutically acceptable quaternary salts known by a person skilled in the art, which
specifically include the quarternary ammonium salt of the formula —NR,R',R" + Z", wherein
R, R', R" is independently hydrogen, alkyl, or benzyl, Ci-Cg-alkyl, C2-C6-alkenyl, C2-C6-
alkynyl, Ci-Ca-alkyl aryl, Ci-Ce-alkyl heteroaryl, cycloalkyl, heterocycloalkyl, and Z is a
counterion, including chloride, bromide, iodide, -O-alkyl, toluenesulfonate,
methylsulfonate, sulfonate, phosphate, or carboxylate (such as benzoate, succinate, acetate,
glycolate, maleate, malate, fumarate, citrate, tartrate, ascorbate, cinnamoate, mandeloate,
and diphenylacetate).
17
"Pharmaceutically active derivative" refers to any compound that upon administration to
the recipient, is capable of providing directly or indirectly, the activity disclosed herein.
The term "indirectly" also encompasses prodrugs which may be converted to the active
form of the drug via endogenous enzymes or metabolism.
It has now been found that compounds of the present invention are modulators of the
Phosphatoinositides 3-kinases (PI3Ks), comprising PI3K a and y. When the
phosphatoinositides 3-kinase (PI3K) enzyme is inhibited by the compounds of the present
invention, PI3K is unable to exert its enzymatic, biological and/or pharmacological effects.
The compounds of the present invention are therefore useful in the treatment and
prevention of autoimmune disorders and/or inflammatory diseases, cardiovascular diseases,
neurodegenerative diseases, bacterial or viral infections, kidney diseases, platelet
aggregation, cancer, transplantation, graft rejection or lung injuries.
General Formula (I) according to the present invention also comprises its tautomers, its
geometrical isomers, its optically active forms as enantiomers, diastereomers and its
racemate forms, as well as pharmaceutically acceptable salts thereof. Preferred
pharmaceutically acceptable salts of the Formula (I) are acid addition salts formed with
pharmaceutically acceptable acids like hydrochloride, hydrobromide, sulfate or bisulfate,
phosphate or hydrogen phosphate, acetate, benzoate, succinate, fumarate, maleate, lactate,
citrate, tartrate, gluconate, methanesulfonate, benzenesulfonate, and paro-toluenesulfonate
salts.
The compounds according to Formula (I) are suitable for the modulation, notably the
inhibition of the activity of phosphatoinositides 3-kinases (PI3K). It is therefore believed
that the compounds of the present invention are also particularly useful for the treatment
and/or prevention of disorders, which are mediated by PI3Ks, particularly PI3K a and/or
PI3K y. Said treatment involves the modulation - notably the inhibition or the down
regulation - of the phosphatoinositides 3-kinases.
The compounds according to Formula (I) are suitable for use as a medicament.
18
In one embodiment, the invention provides pyridine methylene azolidinone derivatives of
Formula (I):
(I)
wherein R1 is selected from H, halogen, optionally substituted Ci-Ce-alkyl, optionally
substituted C2-C6-alkenyl, optionally substituted C2-C6-alkynyl, optionally substituted Ci-
Ce-alkyl alkoxy, optionally substituted alkoxycarbonyl, optionally substituted acyl,
optionally substituted sulfonyl, optionally substituted sulfanyl, optionally substituted
sulfinyl, optionally substituted alkoxy and optionally substituted amino;
R2 is selected from H; halogen; optionally substituted Q-Ce-alkyl; optionally substituted
C2-C6-alkenyl; C2-Cg-alkynyl; optionally substituted aryl, such as phenyl and 3,5-
dimethoxy phenyl; optionally substituted heteroaryl, such as optionally substituted 2,3 dihydroindolyl
(e.g. 2,3-dihydro-indole-l-carboxylic acid tert-butyl ester, 2,3-Dihydro-lHindol-
5-yl, Acetyl-2,3-dihydro-lH-indol-5-yl, l-(4-Dimethylamino-butyryl)-2,3-dihydrolH-
indol-5-yl, l-Methanesulfonyl-2,3-dihydro-lH-indol-5-yl, 1-Chloromethanesulfonyl-
2,3-dihydro-lH-indol-5-yl, l-(3-Morpholin-4-yl-propane-l-sulfonyl)-2,3-dihydro-lHindol-
5-yl); optionally substituted Cs-Cg-cycloalkyl; optionally substituted Cs-Cgheterocycloalkyl,
including optionally substituted piperidinyl such as 1-piperidinyl, 4-
fluoro-1-piperidinyl, 4-(trifluoromethyl)-1-piperidinyl; optionally substituted aryl Ci-Cealkyl;
optionally substituted heteroaryl Ci-Cg-alkyl; optionally substituted Cs-Cg-cycloalkyl
Ci-Ce-alkyl and optionally substituted Cs-Cg-heterocycloalkyl Cj-Ce-alkyl; optionally
substituted Ci-Ce-alkyl alkoxy; optionally substituted alkoxycarbonyl; optionally
substituted acyl; optionally substituted sulfonyl; optionally substituted sulfanyl; optionally
substituted sulfinyl; optionally substituted alkoxy and optionally substituted amino.
X is selected from S, NH and O;
19
Y is selected from O, S and NR3, wherein R3 is selected from H, optionally substituted Ci-
C6-alkoxy, optionally substituted Ci-Ce-alkyl, optionally substituted C2-C6-alkenyl,
optionally substituted C2-C6-alkynyl, optionally substituted Ci-Ce-alkyl aryl, cyano and
optionally substituted sulfonyl;
A is an optionally substituted heteroaryl group, including optionally substituted
pyrimidinyl, optionally substituted pyrazinyl, optionally substituted furyl and optionally
substituted imidazolyl;
n is an integer selected from 1 and 2; as well as its geometrical isomers, its optically active
forms as enantiomers, diastereomers and its racemate forms, as well as pharmaceutically
acceptable salts thereof.
In a specific embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein R'is H.
In another specific embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein R2 is H.
In another specific embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein R2 is optionally substituted CB-Cg-heterocycloalkyl.
In another specific embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein R2 is selected from optionally substituted aryl and
optionally substituted heteroaryl.
In another specific embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein R3 is H.
In another specific embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein X is S.
20
In another specific embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein Y is O.
In another specific embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein Y is S.
In another specific embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein n is 1.
In another specific embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein n is 2.
In a preferred embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein A is such as it forms together with the pyridine ring the
following group (la):
(la)
wherein R1, R2 and n are as defined above.
In another preferred embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein A is such as it forms together with the pyridine ring the
following group (Ib):
wherein R1, R2 and n are as defined above.
21
In another preferred embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein A is such as it forms together with the pyridine ring the
following group (Ic):
R'
wherein R1, R2 and n are as defined above.
In another preferred embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein A is such as it forms together with the pyridine ring the
following group (Id):
wherein R1, R2 and n are as defined above.
In a preferred embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein R1 is H; R2 is optionally substituted Ci-C$-
heterocycloalkyl; X is S; Y is O or S; A forms together with the pyridine ring a group of
Formula (la) and n is 1.
In a preferred embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein R1 is H; X is S; Y is O and A forms together with the
pyridine ring a group of Formula (Ib).
22
In a preferred embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein R1 is H; X is S; Y is O and A forms together with the
pyridine ring a group of Formula (Ic).
5 In a preferred embodiment, the invention provides pyridine methylene azolidinone
derivatives of Formula (I) wherein R1 is H; X is S; Y is O and A forms together with the
pyridine ring a group of Formula (Id).
Compounds of the present invention include in particular those of the group consisting
;5Z)-5-{[4-(l-piperidinyl)pyrido[3,2-d]pyrimidin-6-yl]methylene}-l,3-
thiazolidine-2,4-dione;
(5Z)-5-{[4-(4-fluoro-l-piperidinyl)pyrido[3,2-d]pyrimidin-6-yl]methylene}-l,3
-thiazolidine-2,4-dione;
(5Z)-5-({4-[4-(trifluoromethyl)-l-piperidinyl]pyrido[3,2-d]pyrimidin-6-yl}
methylene)- l,3-thiazolidine-2,4-dione;
5-Pyrido[2,3-b]pyrazin-6-ylmethylene-thiazolidine-2,4-dione;
5-Furo[3,2-b]pyridine-5-ylmethylene-thiazolidine-2,4-dione;
5-[4-(4-Fluoro-piperidin-l-yl)-pyrido[3,2-d]pyrimidin-6-ylmethylene]-2-
hioxo-thiazolidin-4-one;
5-(3-Phenyl-3H-imidazo[4,5-b]pyridin-5-ylmethylene)-thiazolidine-2,4-dione;
-[3-(3,5-Dimethoxy-phenyl)-3H-imidazo[4,5-b]pyridin-5-ylmethylene]-
iiazolidine-2,4-dione;
-[5-(2,4-Dioxo-thiazolidin-5-ylidenemethyl)-imidazo[4,5-b]pyridin-3-yl]-2,3-
ihydro-indole-1-carboxylic acid tert-butyl ester;
5-[3-(2,3-Dihydro-lH-indol-5-yl)-3H-imidazo[4,5-b]pyridin-5-ylmethylene]-
thiazolidine-2,4-dione;
5-[3-(l-Acetyl-2,3-dihydro-lH-indol-5-yl)-3H-imidazo[4,5-b]pyridin-5-yl
methylene]-thiazolidine-2,4-dione;
5-{3-[l-(4-Dimethylamino-butyryl)-2,3-dihydro-lH-indol-5-yl]-3Himidazo[
4,5-b]pyridin-5-ylmethylene}-thiazolidine-2,4-dione;
5-[3-(l-Methanesulfonyl-2,3-dihydro-lH-indol-5-yl)-3H-imidazo[4,5-b]
pyridin-5-ylmethylene]-thiazolidine-2,4-dione;
5-[3-(l-Chloromethanesulfonyl-2,3-dihydro-lH-indol-5-yl)-3H-imidazo[4,5-b]
5yridin-5-ylmethylene]-thiazolidine-2,4-dione;
5-{3-[l-(3-Morpholin-4-yl-propane-l-sulfonyl)-2,3-dihydro-lH-indol-5-yl]-3Hmidazo[
4,5-b]pyridin-5-ylmethylene}-thiazolidine-2,4-dione;
6-[5-(2,4-Dioxo-thiazolidin-5-ylidenemethyl)-imidazo[4,5-b]pyridin-3-yl]-2,3-
lihydro-indole-1-carboxylic acid tert-butyl ester;
-[3-(l-Methanesulfonyl-2,3-dihydro-lH-indol-6-yl)-3H-imidazo[4,5-b]
Dyridin-5-ylmethylene]-thiazolidine-2,4-dione.
The compounds of the present invention are useful as medicaments. They may be used for
the preparation of a medicament for the prophylaxis and/or treatment of autoimmune
disorders and/or inflammatory diseases, cardiovascular diseases, neurodegenerative
diseases, bacterial or viral infections, kidney diseases, platelet aggregation, cancer,
transplantation, graft rejection or lung injuries.
In one embodiment, the compounds of Formula (I) are useful for the treatment and/or
prophylaxis of autoimmune diseases or inflammatory diseases such as multiple sclerosis,
10 psoriasis, rheumatoid arthritis, systemic lupus erythematosis, inflammatory bowel disease,
lung inflammation, thrombosis or brain infection/inflammation such as meningitis or
encephalitis.
24
In another embodiment, the compounds of Formula (I) are useful for the treatment and/or
prophylaxis of neurodegenerative diseases including Alzheimer's disease, Huntington's
disease, CNS trauma, stroke or ischemic conditions.
5 In still a further embodiment according to the invention, the compounds of Formula (I) are
useful for the treatment and/or prophylaxis of cardiovascular diseases such as atherosclerosis,
heart hypertrophy, cardiac myocyte dysfunction, elevated blood pressure or
vasoconstriction.
10 In still another embodiment according to the invention, the compounds of Formula (I) are
useful for the treatment and/or prophylaxis of chronic obstructive pulmonary disease,
anaphylactic shock fibrosis, psoriasis, allergic diseases, asthma, stroke or ischemic
conditions, ischemia-reperfusion, platelets aggregation/activation, skeletal muscle
atrophy/hypertrophy, leukocyte recruitment in cancer tissue, angiogenesis, invasion
15 metastisis, in particular melanoma, Karposi's sarcoma, acute and chronic bacterial and viral
infections, sepsis, transplantation, graft rejection, glomerulo sclerosis, glomerulo nephritis,
progressive renal fibrosis, endothelial and epithelial injuries in the lung or in general lung
airways inflammation.
In another embodiment according to the invention, is provided a process for the preparation
20 of pyridine methylene a/olidinone derivative according to Formula (I), comprising the step
of reacting a compound of Formula (II) with a derivative of Formula (III) in presence of a
base:
(II) (I") (I)
wherein R1, R2, A, X, Y and n are defined above.
25
25
In another embodiment according to the invention, are provided compounds according to
Formula (II):
wherein R1, R2, A, X, Y and n are defined above and wherein the compounds of Formula II
5 are selected from the group of formulae (Ha), (lib) and (He):
wherein R4 is selected from H and R2; R5 is a R2 group wherein the first atom attached to the
pyrimidine ring is selected from C, N, S and O and wherein when R4 is NHb, R5 is not
R1, R2 and n are as defined above;
wherein R1, R2 and n are as defined above;
wherein R , R and n are as defined above and wherein at least one R or R is not H; and
26
wherein R1, R2 and n are as defined above with the proviso that the compound of Formula
(lid) is not 2-(4-methoxyphenyl)-3H-Imidazo[4,5-b]pyridine-5-carboxaldehyde (RN
142764-79-2).
5
In a further embodiment according to the invention, are provided compounds according to
Formula (II) from the group:
4-Piperidin-l-yl-pyrido[3,2-d]pyrimidine-6-carbaldehyde;
4-(4-Fluoro-piperidin-l-yl)-pyrido[3,2-d]pyrimidine-6-carbaldehyde;
10 4-(4-Methyl-piperidin-l-yl)-pyrido[3,2-d]pyrimidine-6-carbaldehyde;
Pyrido[2,3-b]pyrazine-6-carbaldehyde;
2-Trimethylsilanyl-furo[3,2-b]pyridine-5-carbaldehyde;
3-Phenyl-lH-imidazo[4,5-b]pyridine-5-carbaldehyde;
3-(3,5-Dimethoxyphenyl)-3//-imidazo[4,5-6]pyridine-5-carbaldehyde;
15 Tert-butyl 5-(5-formyl-3//-imidazo[4,5-6]pyridin-3-yl)indoline-l-carboxylate;
3-(l-acetyl-2,3-dihydro-l//-indol-5-yl)-3//-imidazo[4,5-Z>]pyridine-5-carbaldehyde;
3-{l-[4-(dimethylamino)butanoyl]-2,3-dihydro-17/-indol-5-yl}-3//-imidazo[4,5-6]pyridine-
5-carbaldehyde;
3-[l-(methylsulfonyl)-2,3-dihydro-l//-indol-5-yl]-3//-imidazo[4,5-6]pyridine-5-
20 carbaldehyde;
3-{l-[(chloromethyl)sulfonyl]-2,3-dihydro-l//-indol-5-yl}-3//-imidazo[4,5-6]pyridine-5-
carbaldehyde;
27
3-{l-[(3-morpholin-4-ylpropyl)sulfonyl]-2,3-dihydro-l//-indol-5-yl}-3//-imidazo[4,5-i]
pyridine-5-carbaldehyde;
Terr-butyl 6-(5-formyl-3//-imidazo[4,5-Z>]pyridin-3-yl)indoline-1 -carboxylate;
3-[l-(methylsulfonyl)-2,3-dihydro-l//-indol-6-yl]-3//-imidazo[4,5-6]pyridine-5-
5 carbaldehyde.
The pyridine methylene azolidinone derivatives exemplified in this invention may be
prepared from readily available starting materials using the following general methods and
procedures. It will be appreciated that where typical or preferred experimental conditions
(i.e. reaction temperatures, time, moles of reagents, solvents etc.) are given, other
10 experimental conditions can also be used unless otherwise stated. Optimum reaction
conditions may vary with the particular reactants or solvents used, but such conditions can
be determined by the person skilled in the art, using routine optimisation procedures.
When employed as pharmaceuticals, the compounds of the present invention are typically
15 administered in the form of a pharmaceutical composition. Hence, pharmaceutical
compositions comprising a compound of Formula (I) and a pharmaceutically acceptable
carrier, diluent or excipient therefore are also within the scope of the present invention. A
person skilled in the art is aware of a whole variety of such carrier, diluent or excipient
compounds suitable to formulate a pharmaceutical composition.
20 The compounds of the invention, together with a conventionally employed adjuvant,
carrier, diluent or excipient may be placed into the form of pharmaceutical compositions
and unit dosages thereof, and in such form may be employed as solids, such as tablets or
filled capsules, or liquids such as solutions, suspensions, emulsions, elixirs, or capsules
filled with the same, all for oral use, or in the form of sterile injectable solutions for
25 parenteral (including subcutaneous use). Such pharmaceutical compositions and unit
dosage forms thereof may comprise ingredients in conventional proportions, with or
without additional active compounds or principles, and such unit dosage forms may contain
any suitable effective amount of the active ingredient commensurate with the intended daily
dosage range to be employed.
Pharmaceutical compositions containing pyridine methylene azolidinone derivatives of this
invention can be prepared in a manner well known in the pharmaceutical art and comprise
at least one active compound. Generally, the compounds of this invention are administered
in a pharmaceutical ly effective amount. The amount of the compound actually administered
5 will typically be determined by a physician, in the light of the relevant circumstances,
including the condition to be treated, the chosen route of administration, the actual
compound administered, the age, weight, and response of the individual patient, the
severity of the patient's symptoms, and the like.
10 The pharmaceutical compositions of the present invention can be administered by a variety
of routes including oral, rectal, transdermal, subcutaneous, intravenous, intramuscular and
intranasal. The compositions for oral administration can take the form of bulk liquid
solutions or suspensions, or bulk powders. More commonly, however, the compositions are
presented in unit dosage forms to facilitate accurate dosing. The term "unit dosage forms"
15 refers to physically discrete units suitable as unitary dosages for human subjects and other
mammals, each unit containing a predetermined quantity of active material calculated to
produce the desired therapeutic effect, in association with a suitable pharmaceutical
excipient. Typical unit dosage forms include prefilled, premeasured ampoules or syringes
of the liquid compositions or pills, tablets, capsules or the like in the case of solid
20 compositions. In such compositions, the pyridine methylene azolidinone derivative is
usually a minor component (from about 0.1 to about 50% by weight or preferably from
about 1 to about 40% by weight) with the remainder being various vehicles or carriers and
processing aids helpful for forming the desired dosing form.
25 Liquid forms suitable for oral administration may include a suitable aqueous or nonaqueous
vehicle with buffers, suspending and dispensing agents, colorants, flavors and the like.
Solid forms may include, for example, any of the following ingredients, or compounds of a
similar nature: a binder such as microcrystalline cellulose, gum tragacanth or gelatine; an
excipient such as starch or lactose, a disintegrating agent such as alginic acid, Primogel, or
While this step may be carried out in the absence of a solvent at a temperature, which is
sufficiently high to cause at least partial melting of the reaction mixture, it is preferably
carried out in the presence of an inert solvent. A preferred temperature range is from about
70°C to 250°C, and especially preferred is a temperature of from about 80°C to 120°C.
Examples of such solvents for the above reaction include solvents like dimethoxymethane,
xylene, toluene, o-dichlorobenzene and methanol. Examples of suitable mild bases for the
above reaction are alkali metal and alkaline earth salts of week acids such as the (Ci-C^)-
alkyl carboxylic acids and benzoic acid, alkali metal and alkaline earth carbonates and
bicarbonates such as calcium carbonate, magnesium carbonate, potassium bicarbonate and
secondary amines such as piperidine, morpholine or pyrrolidine as well as tertiary amines
such as pyridine, triethylamine, diisopropylethylamine, N-methylmorpholine, Nethylpiperidine,
N-methylpiperidine and the like. Especially preferred mild bases are
sodium acetate or pyrrolidine for reasons of economy and efficiency.
29
xide; a sweetening agent such as sucrose or saccharin; or a flavoring agent such as peppermint,
methyl salicylate, or orange flavoring.
Injectable compositions are typically based upon injectable sterile saline or phosphate-buffered
saline or other injectable carriers known in the art. As above mentioned, the pyridine
methylene azolidinone derivatives of Formula (I) in such compositions is typically a minor
component, frequently ranging between 0.05 to 10% by weight with the remainder being
the injectable carrier and the like.
The above described components for orally administered or injectable compositions are
merely representative. Further materials as well as processing techniques and the like are
set out in Part 5 of Remington's Pharmaceutical Sciences, 20th Edition, 2000, Marck
Publishing Company, Easton, Pennsylvania, which is incorporated herein by reference.
The compounds of this invention can also be administered in sustained release forms or
from sustained release drug delivery systems. A description of representative sustained
release materials can also be found in the incorporated materials in Remington's Pharmaceutical
Sciences.
Synthesis of compounds of the invention:
The novel pyridine methylene azolidinone derivatives according to Formula (I) can be
prepared from readily available starting materials by several synthetic approaches, using
both solution-phase and solid-phase chemistry protocols (Brummond et al, 1999, J.O.C.,
64, 1723-1726). Examples of synthetic pathways for the will be described.
The following abbreviations refer respectively to the definitions below:
A (Angstrom), cm (centimeter), eq (equivalent), h (hour), g (gram), M (molar), MHz
(Megahertz), u,l (microliter), min (minute), mg (milligram), mL (milliliter), mm
(millimeter), mmol (millimole), mM (millimolar), nm (nanometer), rt (room temperature),
ACN (acetonitrile), ATP (Adenoside Triphosphate), BSA (Bovine Serum Albumin), DCM
(dichloromethane), DIBAL (Diisobutylaluminiumhydride), DMF (dimethyl formamide),
30
DMSO (Dimethyl Sulfoxide), HPLC (High Performance Liquid Chromatography), InslP
(D-myo-inositol-1 -phosphate), IR (Infrared), LC (Liquid chromatography), MS (mass
spectrometry), NMR (Nuclear Magnetic Resonance), PBS (Phosphate Buffered Saline),
Pis (Phosphoinositides), PI3Ks (Phosphoinositide 3-kinases), PI(3)P (Phosphatidylinositol
3-monophosphate), PI(3,4)P2 (Phosphatidylinositol 3,4-bisphosphate), PI(3,4,5)P3
(Phosphatidylinositol 3,4,5-trisphosphate), PI(4)P (Phosphatidylinositol-4-phosphate),
PI(4,5)P2) (Phosphatidyl inositol-4,5-biphosphate), Ptdlns (Phosphatidylinositol), PVT
(polyvinyl toluene), SPA (Scintillation Proximity Assay), TEA (triethylamine), TFA
(trifluoro-acetic acid), THF (tetrahydrofuran), TLC (Thin Layer Chromatography), TMS
(Trimethylsilyl), UV (Ultraviolet).
The pyridine methylene azolidinone derivatives exemplified in this invention may be
prepared from readily available starting materials using the following general methods and
procedures. It will be appreciated that where typical or preferred experimental conditions
(i.e. reaction temperatures, time, moles of reagents, solvents etc..) are given, other
experimental conditions can also be used unless otherwise stated. Optimum reaction
conditions may vary with the particular reactants or solvents used, but such conditions can
be determined by the person skilled in the art, using routine optimisation procedures.
In the process illustrated in the following schemes R1, R2, A, X, Y and n are each as abovedefined
in the description.
Generally, the pyridine methylene azolidinone derivatives according to the general Formula
(I) could be obtained by several synthetic approaches, using both solution-phase and solidphase
chemistry protocols (Brummond et al, 1999, above), either by conventional methods
or by microwave-assisted techniques.
In a first step, an aldehyde reactant PI (PIa, PIb, Pic, PId) and one to two equivalents of
reactant P2 (in particular thiazolidinedione or rhodanine) are heated in the presence of a
preferably mild base to provide the corresponding olefin of Formula (I) as shown on
31
Scheme 1 below. In the first step, PI may be replaced by precursors PI a, Plb, Pic and Pld
in order to obtain the final compounds (la), (Ib) (Ic) and (Id) respectively as above
described in the description.

Particularly preferred processes according to the invention are illustrated by the following
Schemes 2, 3, 4 and 5 in which compounds of formula (la), (Ib), (Ic) and (Id) respectively,
may be obtained using the same reaction conditions as above-mentioned.
In such a typical reaction (Tietze et al, in "The Knoevenagel reaction", p.341 ff.,
Pergamon Press, Oxford 1991, Eds.: Trost B.M., Fleming I.) the aldehyde PI and the other
starting material (e.g. thiazolidinedione) P2 are combined in approximately equimolar
amounts with 0.5 to one equivalent of pyrolidine in methanol or similar solvent and heated
between 70 and 200°C at which the reaction is substantially complete in about 15 minutes
to 3 hours. The desired olefm of Formula (I) is then isolated by filtration, in case it would
have precipitated out of the reaction mixture upon cooling, or for example, by mixing with
water and subsequent filtration, to obtain the crude product. The crude product is purified,
if desired, e.g. by crystallization or by standard chromatographic methods.
Alternatively compounds of Formula (I) may be obtained typically by mixing equimolar
amounts of thiazolidinedione P2 with aldehyde PI with molar excess of anhydrous sodium
acetate and the mixture is heated at a temperature high enough to effect melting, at which
temperature the reaction is mainly complete in about 5 to 60 minutes.
Preferably, the above reaction is carried out in acidic media such as acetic acid in the
presence of sodium acetate or beta-alanine.
More preferably, the above reaction is carried out in methanol using 1.1 to 2.0 equivalents
of thiazolidinedione P2, one equivalent of aldehyde PI and 0.2 to 0.5 equivalents of
pyrrolidine in methanol.
The reactions described above may be carried out alternatively under microwave conditions
as heating source. Typically, the aldehyde starting material PI and thiazolidinedione P2 are
combined in approximately equimolar amounts with 0.5 to one equivalent of piperidine in
dimethoxymethane or similar solvent and heated between 140°C and 240°C at which the
reaction is substantially complete in about 3 to 10 minutes.
The pharmaceutically acceptable cationic salts of compounds of the present invention are
readily prepared by reacting the acid forms with an appropriate base, usually one
34
equivalent, in a co-solvent. Typical bases are sodium hxdroxide, sodium methoxide,
sodium ethoxide, sodium hydride, potassium hydroxide, potassium methoxide, magnesium
hydroxide, calcium hydroxide, benzathine, choline, diethanolamine, ethylenediamine,
meglumine, benethamine, diethylamine, piperazine and tromethamine. The salt is isolated
by concentration to dryness or by addition of a non-solvent. In some cases, salts can be
prepared by mixing a solution of the acid with a solution of the cation (sodium
ethylhexanoate, magnesium oleate), employing a solvent in which the desired cationic salt
precipitates, or can be otherwise isolated by concentration and addition of a non-solvent.
2,4-Azolidinone derivatives P2 are commercially available from various sources.
Methods of preparing intermediates of compounds of Formula (I).
The aldehydes of formula PI are prepared by a variety of well known methods, for example
by oxido-reduction starting from the corresponding carboxylic acid alkyl ester or
carboxylic acid.
Standard techniques to reduce carboxylic acid alkyl ester, carboxylic halides or carboxylic
acid to benzylic alcohols use lithium aluminium hydride, diisopropylaluminum, lithium
aluminium tri-tert-butoxyhydride etc.
Ultimately, the corresponding benzylic alcohol is re-oxidized to the corresponding
aldehyde by mild oxidation with reagents such as manganese dioxide, chromic acid, Dess-
Martin reagent or Swern oxidation, or under other conditions known to produce aldehydes
from primary alcohols. An alternative way may be the direct reduction of the corresponding
carboxylic acid alkyl ester or carboxylic acid to the corresponding aldehyde, using DIBAL
at low temperature or any other techniques known in the field.
An alternative way to prepare the appropriate aldehyde PI is the selective reduction of a
nitrile moiety to the corresponding aldehyde using known methods like e.g. DIBAL.
35
Another way to obtain aldehydes of formula PI is the selective reduction of the
corresponding acyl chloride using e.g. lithiumaluminium-tri-tert-butoxyhydride (Cha et al,
1993,J.O.C,58,p.4732-34}.
Another way to synthesize aldehydes PI is to start from the corresponding 2-pyridine
halides, which are submitted to organometallic assisted reaction in order to afford the
corresponding 2-vinyl-pyridines, which ultimately can be oxidized to the corresponding
aldehydes PI using standard oxidation agents for olefinic bonds such as osmium tetroxide,
ruthenium tetroxide, ozone, ruthenium(III)chloride in the presence of sodium periodate and
others known to person skilled in the art.
Another way to obtain the corresponding aldehydes PI is the oxidation of a 2-
methylpyridine using oxidizing agents such as selenium dioxide or benzene seleninic
anhydride.
Acccording to a more particularly preferred process of the invention, as illustrated by
Scheme 6 below, reactant Pla can be obtained starting from a derivative of formula P3a
wherein R is selected from methyl, ethyl or any other group susceptible to reduction known
to the person skilled in the art, by optionally applying a reduction/oxidation sequence using
preferably lithium aluminium hydride in tetrahydofuran, followed by an oxidation step
using preferably manganese dioxide in dichloromethane.
An intermediate that can be used for to above synthesis is methyl 2,4,8-trichloropyrido[3,2-
d]pyrimidine-6-carboxylate (Intermediate 1.3), which synthesis is described in the
literature (Srinivasan et al, 1979, J.O.C, 1979, 44, 3, p.435), as shown in Scheme 7 below.
H
Intermediate 1.2 Intermediate 1.3
The selective replacement of the 3 chloro groups may allow the introduction of R1 and R2
groups leading to different intermediates of formula P3a (P3a(l), P3a(2), P3a(3), P3a(4),
Reductions steps in Scheme 8 can be carried out using standard reducing agents such
hydrogen or Raney-Nickel dithiation (Srinivasan et al, 1979, above).
Preferably, the reduction is conducted under mild conditions using ammonium formate in
the presence of palladium. The amount of ammonium formate is determined by the
numbers of chlorine atoms to be removed (2-12 eq.)-
The introduction of groups R2 and R1 is obtained through standard reaction techniques
known to the person skilled in the art.
Acccording to another particularly preferred process of the invention, as illustrated by
Scheme 9 below, aldehyde Plb can be obtained starting from an intermediate P3b by
oxidative cleavage of an olefinic double bond.
wherein R is selected from H, optionally substituted C\-C^ alkyl, optionally substituted
aryl. In such a reaction the olefmic double bond is cleaved using oxidation agents for
olefinic bonds such as osmium tetroxide, ruthenium tetroxide, ozone,
ruthenium(III)chloride in the presence of sodium periodate and others known to person
skilled in the art.
Intermediate P3b can be synthesized starting from 2-halogen pyridine derivatives using
organometallic assisted coupling reactions to introduce a vinyl moiety in standard fashion
known to the person skilled in the art. The corresponding 2-halogen pyridines are readily
accessible from e.g. 2-halogen-4-nitro-6-aminopyridine as depicted in Scheme 10 below,
wherein "Hal" represents a halogen.
Acccording to another particularly preferred process of the invention, as illustrated by
Scheme 11 below, wherein R is selected from H, optionally substituted Cj-Ce alkyl,
optionally substituted aryl, intermediate Pic can be obtained starting from intermediate P3c
by oxidation of 2-methyl pyridines.
Such oxidation can be carried out using selenium dioxide or benzene seleninic anhydride in
an inert solvent at temperatures between 150 to 250°C. Preferably, such a reaction is
carried out using microwave as heating source. In a second step, desilylation is performed
under standard conditions as described in Kocienski, 1994 (above) and Greene et al, 1999
(above).
Preferably the trimethylsilyl group is cleaved using sodium hydroxide from 2 to 5N.
The introduction of R2 may be performed as described in WO2004/007491.
According to another more preferred process, intermediate Pic can be obtained from
intermediate P3c via a picoline N-oxide rearrangement: Typically intermediate P3c is
subjected to N-oxidation leading to intermediate P3', using oxidants like m-Chloroperbenzoic
acid (m-CPBA) at room temperature or any oxidant know to the person skilled
in the art. Subsequent basic work-up and heating P3c' in acetic anhydride at 100°C for 5 to
15 min (Cava et al., 1958, JOC, 23, 1616) leads to the corresponding acetyl protected
alcohol, which in turn can be deprotected and desilylated simultaneously by treatment with
40
sodium hydroxide (2N) in methanol at room temperature. Finally, primary alcohol P3c"
can oxidized to the corresponding aldehyde intermediate Pic using oxidants like
manganese dioxide in dichloromethane or any oxidants known to person skilled in the art
(Scheme 11 above).
Acccording to another particularly preferred process of the invention, where azabenzimidazoles
are represented, Intermediate P4d can be obtained from intermediate PSd,
as depicted in Scheme 12 below, wherein "Hal" represents a halogen.
Substitution of the 2-halogen with R2NH2 in alcohols (e.g. ethanol) in the presence of a
base is followed by reduction of the nitro group catalyzed by indium metal in the presence
of a hydrogen source. P4d is obtained by subsequent cyclization by means of condensation
with amidines followed by installation of a vinyl moiety using organometallic assisted
coupling reactions in standard fashion known to the person skilled in the art.
When R2 in intermediate P4d is a chemical moiety which is to undergo synthetic
transformations, these transformations are carried out after completion of the coupling with
the vinyl moiety. These synthetic transformations include, but are not limited to,
deprotections, couplings, oxidations, reductions.
with a particularly preferred process of the invention, the installed vinyl
olefin bond of intermediate P3d (Scheme 13 above) is cleaved using oxidation agents for
olefinic bonds such as osmium tetroxide or ruthenium(III)chloride in the presence of
sodium periodate, ozone, and others known to person skilled in the art.
According to a further general process, compounds of Formula (I) can be converted to
alternative compounds of Formula (I), employing suitable interconversion techniques well
known by a person skilled in the art.
If the above set of general synthetic methods is not applicable to obtain compounds
according to Formula (I) and/or necessary intermediates for the synthesis of compounds of
Formula (I), suitable methods of preparation known by a person skilled in the art should be
used. In general, the synthesis pathways for any individual compound of Formula (I) will
depend on the specific substitutents of each molecule and upon the ready availability of
intermediates necessary; again such factors being appreciated by those of ordinary skill in
the art. For all the protection and deprotection methods, see Kocienski, 1994 (above) and
Greene et al., 1999 (above).
Compounds of this invention can be isolated in association with solvent molecules by crystallization
from evaporation of an appropriate solvent. The pharmaceutically acceptable
acid addition salts of the compounds of Formula (I), which contain a basic center, may be
prepared in a conventional manner. For example, a solution of the free base may be treated
with a suitable acid, either neat or in a suitable solution, and the resulting salt isolated either
by filtration or by evaporation under vacuum of the reaction solvent. Pharmaceutical ly
acceptable base addition salts may be obtained in an analogous manner by treating a solu42
tion of compound of Formula (I) with a suitable base. Both types of salts may be formed or
interconverted using ion-exchange resin techniques.
In the following the present invention shall be illustrated by means of some examples,
which are not construed to be viewed as limiting the scope of the invention.
Examples:
The following starting materials commercially available were used:
5-aminouracil commercially available from Aldrich;
Dimethyl acetylenedicarboxylate commercially available from Aldrich;
N,N-diethylaniline commercially available from Aldrich;
Phosphorus oxychloride commercially available from Aldrich;
N-ethyldiisopropylamine commercially available from Aldrich;
Ammonium formate commercially available from Aldrich;
Lithium aluminum hydride commercially available from Aldrich;
Manganese oxide commercially available from Aldrich;
2,4-thiazolidinedione commercially available from Aldrich;
Rhodanine commercially available from Aldrich;
Beta-alanine commercially available from Aldrich;
4-fluoro-piperidine commercially available from Fluorochem;
4-trifluoromethyl-piperidine commercially available from Lancaster;
Glyoxal (Oxaldehyde) commercially available from Aldrich;
Tetrakis (triphenylphosphine) palladium commercially available from Aldrich;
Vinyltributylstannane commercially available from Aldrich;
6-iodo-2-picolin-5-ol commercially available from Acros;
(trimethylsilyl)acetylene commercially available from Aldrich;
Dichlorobis(triphenyl phosphine)palladium(II) commercially available from Aldrich;
1,2 dichloro benzene commercially available from Aldrich;
2-amino-3-nitro-6-chloropyridine commercially available from ACROS;
Indium powder commercially available from Aldrich;
Formamidine acetate commercially available from Aldrich;
43
Tributyl(vinyl)tin commercially available from Aldrich;
Osmium tetroxide commercially available from Aldrich;
Sodium periodate commercially available from Aldrich;
2,6-Dichloro-3-nitropyridine commercially available from Aldrich;
3,5-Dimethoxyaniline commercially available from Aldrich;
5-Nitroindoline commercially available from Aldrich;
6-Nitroindoline commercially available from Aldrich;
4-(Dimethylamino)butyric acid hydrochloride commercially available from Aldrich;
3-Chloropropanesulfonyl chloride commercially available from Aldrich;
Chloromethanesulfonyl chloride commercially available from Alfa Aesar.
The HPLC, NMR and MS data provided in the examples described below are obtained as
followed: HPLC: column Waters Symmetry C8 50 x 4.6 mm, Conditions: MeCN/H2O, 5 to
100% (8 min), max plot 230-400 nm; Mass spectra: PE-SCIEX API 150 EX (APCI and
ESI), LC/MS spectra: Waters ZMD (ES); 'H-NMR: Bruker DPX-300MHz.
Preparative HPLC purifications are performed with HPLC Waters Prep LC 4000 System
equipped with columns Prep Nova-Pak®HR C186 u,m 60A, 40x30 mm (up to lOOmg) or
with XTerra® Prep MS C8, 10 jam, 50x300 mm (up to 1 g). All the purifications are
performed with a gradient of MeCN/H2O 0.09% TFA. The semi-preparative reverse-phase
HPLC are performed with the Biotage Parallex Flex System equipped with colums
Supelcosil™ ABZ+Plus (25 cm x 21.2 mm, 12 jxm); UV detection at 254 nm and 220 nm;
flow 20 mL/min (up to 50 mg). TLC Analysis is performed on Merck Precoated 60 ¥254
plates. Purifications by flash chromatography are performed on SiC>2 support, using
cyclohexane/EtOAc or DCM/MeOH mixtures as eluents.
Intermediate 1.1: Dimethyl (2E)-2-[(2,4-dioxo-l,2,3,4-tetrahvdro-5-pyrimidinyl)-
aminol-2-butenedioate (Scheme 7)
To a suspension of 5-aminouracil (B)(4.0 g; 31.5 mmol; 1 eq.) in MeOH (120.00 mL) was
added dimethyl acetylenedicarboxylate (C) (5.0 g; 35.2 mmol; 1.1 eq.). The suspension was
stirred at room temperature for 46h. The reaction was monitored by NMR. The solid was
filtered to afford dimethyl (2E)-2-[(2,4-dioxo-l,2,3,4-tetrahydro-5-pyrimidinyl)amino]-2-
butenedioate (8.0 g, 95%) (Intermediate 1.1).
Amount: 8.0 g; Yield: 95%; Formula: CioHiiO6N3; HPLC Purity: 95% ; HPLC Q-bO TFA
0.1%-ACNTFA0.05%): Rt (min); Area % = 1.37; 93.61: 1HNMR (DMSO-d6) 6 3.64 (s,
3H), 3.66 (s,3H), 5.21 (s, lH),7.42(s, 1H), 9.07 (s, 1H), 10.86 (br, 1H), 11.31 (br, 1H);
LC-MS: M/Z ESI: Rt (min) 0.85 ; 210, 238, 270 (M+l); 208, 236, 268 (M-l).
Intermediate 1.2: Methyl 2,4,8-trioxo-l,2,3,4,5,8-hexahvdropyrido[3,2-d1pyrimidine-
6-carboxylate (Scheme 7)
In a 2 liter-4 neck flask fitted with a reflux condenser was placed dimethyl (2E)-2-[(2,4-
dioxo-l,2,3,4-tetrahydro-5-pyrimidinyl)arnino]-2-butenedioate (Intermediate 1.1) (38.5 g;
0.14 mol; 1 eq.) dowtherm(R) A (1 L)(phenyl ether-biphenyl eutectic). The suspension was
stirred with a mechanical stirrer under argon and heated to 220°C. The reaction was
monitored by HPLC/LC/MS. After 3 hours the reaction was stopped by cooling followed
by the addition of 300 mL of petroleum ether. The resulting precipitate was filtered and
washed with DMF (2x100 mL). Methyl 2,4,8-trioxo-1,2,3,4,5,8 hexahydropyrido[3,2-
d]pyrimidine-6-carboxylate (21.02 g; 62%) (Intermediate 1.2) was isolated as a yellow
powder in 100% HPLC purity.
Amount: 21.Og; Yield: 62 %; Formula: C9H705N3; 1H NMR (DMSO-d6) 5 3.87 (s, 3H),
7.58 (s,lH), 10.90 (s, 1H), 11.56(s, 1H), 12.10 (br, 1H).
Intermediate 1.3: Methyl 2,4,8-trichloropyrido[3,2-d1pyrimidine-6-carboxvlate
(Scheme 7)
A solution of methyl 2,4,8-trioxo-1,2,3,4,5,8-hexahydropyrido[3,2-d]pyrimidine-6-
carboxylate (Intermediate 1.2) (9 g; 37.95 mmol; 1 eq.) and N,N-diethylaniline (10 mL) in
phosphorus oxychloride (174 mL) was heated at reflux overnight. The solution was
concentrated in vacuum. The black oil was poured slowly onto ice. Ethyl acetate was added
and the organic phase was washed with water until pH=6. The organic layers were dried
over magnesium sulfate, filtered and concentrated. Methyl 2,4,8-trichloropyrido[3,2-
d]pyrimidine-6-carboxylate (Intermediate 1.3) (6.5 g, 59%) was precipitated in
cyclohexane as a pink solid in 98% HPLC purity. Amount: 6.5g; Yield: 59 %; Formula:
C9H402Cl3N3; 1H NMR (CDC13) 8 4.12 (s, 3H), 8.70 (s, 1H); HPLC (HZO TFA Q.1%-
ACN TFA Q.05%): Rt (min); Area % = 3.07; 98; LC-MS: M/Z ESI: Rt (min) 1.58 ; 293
(M+l).
Intermediate 1.4; Methyl 2,8-dichloro-4-(l-piperidinvl)pyrido[3.2-d1pvrimidine-6-
carboxylate (Scheme 8)
To a solution of methyl 2,4,8-trichloropyrido[3,2-d]p'yrimidine-6-carboxylate (4.65 g; 15.9
mmol; 1 eq.) (Intermediate 1.3) in acetonitrile (140 mL) was added N-ethyldiisopropyl
amine (4 mL; 23.8 mmol; 1.5 eq.). The mixture was cooled down to 0°C. A solution of.
piperidine (1.57 mL; 15.9 mmol; 1 eq.) in acetonitrile (20 mL) was added dropwise. The
mixture was stirred 15 min at 0°C. The mixture was partly concentrated and the precipitate
was filtered, washed with MeOH and dried under vacuum to affordjnethyl 2,8-dichloro-4-
(l-piperidinyl)pyrido[3,2-d]pyrimidine-6-carboxylate (Intermediate 1.4) (3.98 g; 73%) as
a pink solid in 98.8% HPLC purity; Amount: 3.98 g; Yield: 73%; Formula: CwHnC^CbN^
!HNMR(DMSO-d6)5 1.71 (si, 6H), 3.92 (s, 3H), 4.01 (si, 2H), 4.82 (si, 2H), 8.42 (s, 1H);
LC-MS: M/Z ESI: Rt (min) 2.02 ; 341.02, 342.89 (M+l); HPLC (HZO TFA Q.1%- ACN
TFA 0.05%): Rt (min); Area % - 4.27; 98.84.
Intermediate 1.5: Methyl 4-(l-piperidinyl)pyrido[3,2-d1pyrimidine-6-carboxylate
(Scheme 8)
To a round-bottom flask were added palladium (540 mg; 0.51 mmol; 0.05 eq.) isopropanol
(90 mL). Ar was bubbled in this mixture. A degazed ammonium formate solution in water
(2.56 g, 40.6 mmol, 4 eq., in 4 mL of water) was added, followed by methyl 2,8-dichloro-4-
(l-piperidinyl)pyrido[3,2-d]pyrimidine-6-carboxylate (Intermediate 1.4) (3.46 g; 10.5
mmol; 1 eq.) and degazed isopropanol (10 mL). After 30 min, a second batch of
ammonium formate was added as solution in water (2.56 g, 40.6 mmol, 4 eq., in 4 mL of
water). Finally, after additional 30 min, another 8 equivalents of ammonium formate in
water were (5.12 g, 81.2 mmol, 8 eq., in 8 mL of water). The mixture was then stirred at rt.
46
overnight and filtered through celite. The filtrate was evaporated. The crude product was
dissolved in DCM and washed with water and brine. Organic phase was dried over
magnesium sulfate, filtered and evaporated to give methyl 4-(l-piperidinyl)pyrido[3,2-d]
pyrimidine-6-carboxylate (2.29 g; 83%) (Intermediate 1.5), as a yellow solid in 92.9%
HPLC purity. This product was used in the next step without further purification.
Amount: 2.29 g; Yield: 82 %; Formula: CuH^CbNd.: 1HNMR (DMSO-d6)5 1.70 (si, 6H),
3.92 (s, 3H), 4.42 (si, 4H), 8.19 (d, J = 9 Hz, 1H), 8.30 (d, J = 9 Hz, 1H), 8.52 (s, 1H);
HPLC (H2O TFA Q.1%- ACN TFA Q.05%): Rt (min); Area % = 1.83; 92.88; LC-MS: M/Z
ESI: Rt (min) 1.58 ; 273.10 (M+l).
Intermediate 1.6: [4-(l-piperidinyl)pyrido[3,2-d1pyrimidin-6-vl1methanol (Scheme 6)
Methyl 4-(l-piperidinyl)pyrido[3,2-d]pyrimidine-6-carboxylate (Intermediate 1.5) (4.4 g;
16.2 mmol; 1 eq.) was dissolved in THF (176 mL) and the solution was cooled down to -
35°C (internal temperature). Lithium aluminum hydride (8.1 mL; 1.00 M; 8.1 mmol; 0.50
eq.) was added dropwise. After 2h30 at -35°C the reaction was complete. Water (8.1 mL)
was added and the temperature was allowed to warm up to it. After addition of MeOH (8
mL), the mixture was filtered through Celite, and widely rinsed with DCM/MeOH 1:1
mixture. Solvents were removed under reduced pressure to give [4-(lpiperidinyl)
pyrido[3,2-d]pyrimidin-6-yl]methanol (Intermediate 1.6) (3.99 g; quantitative
yield) in 92.9% HPLC purity. This product was used in the next step without further
purification. Amount: 3.99 g; Yield: 100%; Formula: CnHifiONa: 1H NMR (DMSO-d6) S
1.64 (m, 6H), 4.32 (si, 4H), 4.66 (s, 2H), 7.86 (d, J = 9 Hz, 1H), 8.06 (d, J = 9 Hz, 1H),
(s, 1H); LC-MS: M/Z ESI: Rt (min) 1.24; 245.08 (M+l); HPLC (HZO TFA 0.1%-ACN
TFA Q.05%): Rt (min); Area % = 1.39; 92.88.
Intermediate 1.7 : 4-(l-piperidinvi)pyrido[3,2-dlpvrimidine-6-carbaldehyde (Scheme
[4-(l-piperidinyl)pyrido[3,2-d]pyrimidin-6-yl]methanol (Intermediate 1.6) (3.95 g; 16.2
mmol; 1.00 eq.) was dissolved in DCM (160 mL). The solution was cooled down to 0°C
and manganese oxide (16.5 g; 0.162 mol; 10 eq.) was added. The reaction was stirred 5 min
47
at 0°C then overnight at rt. To complete the conversion, MnOa was added after 12 hours
and 20 hours (two batches of 4.96 g; 48.48 mmol; 3 eq.). After 20 hours, the reaction was
complete. MeOH (100 mL) was added and the mixture was filtered through Celite, and
widely rinsed with DCM/MeOH 1:1 mixture. Solvents were removed under reduced
pressure to give 4-(l-piperidinyl)pyrido[3,2-d]pyrimidine-6-carbaldehyde (Intermediate
1.7). This product was used in the next step without further purification. Amount: 4.1 g;
Formula: Ci3Hi4ON4; HPLC Purity: 58.84%; LC-MS: M/Z ESI: Rt (min) 1.53; 243.06
(M+l); HPLC (HZO TFA 0.1%-ACN TFA Q.05%): Rt (min); Area % = 1.39; 58.84. 1H
NMR (DMSO-d6) 5 9.95 (s, 1H), 8.52 (s, 1H), 8.16 (m, 2H), 4.46 (1, 4H), 1.70 (1, 6H).
Intermediate 2.1 : 4-(4-fluoro-piperidin-l-vD-pvridof3,2-d1pvrimidine-6-carbaldehvde
(Schemes 6 and 8)
The title compound was obtained using 4-fluoro-piperidine following the general procedure
described for the synthesis of intermediate 1.7 (Schemes 5 and 7). Amount: 4.15 g;
Formula: CnHnFONt; HPLC Purity: 89.16%; LC-MS: M/Z ESI: Rt (lOmin) 2.26; 261.08
(M+l); HPLC (HZO TFA 0.1%-ACN TFA Q.05%): Rt (min); Area % = 1.19; 89.16; 1H
NMR (DMSO-d6) 5 10.01 (s, 1H), 8.60 (s, 1H), 8.23 (m, 2H), 5.00 (m, 1H), 4.51 (1, 4H),
Intermediate 3.1 : 4-(4-(trifluoromethvl)-piperidin-l-vl)-pvrido[3,2-d1pvrimidine-6-
carbaldehyde (Schemes 6 and 8)
The title compound was obtained using 4-trifluoromethyl-piperidine following the general
procedure described for the synthesis of intermediate 1.7 (Schemes 5 and 7). Amount:
g; Formula: CnHnOFsN,,; HPLC Purity: 67.12%; LC-MS: M/Z ESI: Rt (3min) 1.75;
3 1 1 .04 (M+ 1 ); HPLC (HZO TFA 0.1%-ACN TFA Q.05%): Rt (min); Area % = 1 .89; 67. 1 2;
1H NMR (DMSO-d6) 8 10.03 (s, 1H), 8.62 (s, 1H), 8.18 (s, 2H), 3.22 (t, 2H), 2.48 (m, 2H),
2.08 (d,2H), 1.80(m,3H).
48
Intermediate 4.1: 6-Chloro-pyridine-2,3-diamine (Scheme 10)
2-amino-3-nitro-6-chloropyridine (3 g, 17.3 mmol, 1 eq.) was dissolved in THF (50 mL) at
rt. Tin chloride dihydrate (15.6 g, 70 mmol, 4 eq.) pre-dissolved with HC1CC (5 mL) was
added slowly and reaction mixture stirred at rt for 4 hours. When thereaction was finished,
reaction mixture was cooled down to 0°C and treated with sodium hydroxide 5M (12 mL)
until pH 14 and the corresponding compound extracted with ethyl acetate. Organic phases
were dried with magnesium sulfate, evaporated under vacuum and resulting crude material
purified by flash chromatography using cyclohexane/ethyl acetate (1/1) to give 1.5 g of a
red oil (Intermediate 4.1). Amount: 1.5 g; Yield: 60 %; Formula: C5H6N3C1; HPLC Purity:
98%; HPLC (HZO TFA 0.1%-ACN TFA Q.05%): Rt (min); Area % = 0.5 min; 98%; m
NMR (DMSO-d6) 6 6.67 (d, IH, H5, J=8Hz), 6.36 (d, IH, H4, J= 8Hz), 5.78 (m, 2H, NH2),
4.75 (m. 2H. NH7): LC-MS: M/Z ESI: Rt (min) 0.1 min, 144.0 (M+l).
Intermediate 4.2 : 6-Chloro-pvrido[2,3-b1pyrazine (Scheme 10)
6-chloro-2,3-pyridinediamine (Intermediate 4.1) (1 g, 6.96 mmol, 1 eq.) was dissolved in
THF (15 mL). Glyoxal (0.84 mL, 18.1 mmol, 2.5 eq.) was added and reaction mixture
stirred at rt for 2 hours. Reaction was monitored by RP-HPLC. THF was evaporated,
residue re-dissolved in ethyl acetate (30 mL). Organic phases washed twice with saturated
Na2CO3, dried with magnesium sulfate and evaporated under vacuum to give 1.15 g of the
expected compound as a white solid (Intermediate 4.2). Amount: 1.15 g; Yield: 100 %;
Formula: C7H4N3C1; HPLC Purity: 98%; HPLC (H?O TFA 0.1%-ACN TFA 0.05%): Rt
(min); Area % = 1.2 min; 98%; 1HNMR (CDCIQ 5 9.0 (s, IH), 8.88 (s, IH), 8.36 (d, IH,
J=8Hz), 7.67 (d, IH, J= 8Hz); LC-MS: M/Z ESI: Rt (min) 0.68 min, 167.0 (M+l).
Intermediate 4.3 : 6-Vinvl-pyrido[2,3-b1pvrazine (Scheme 10)
6-chloropyrido[2,3-b]pyrazine (Intermediate 4.2) (3 g, 18.12 mmol, 1.00 eq.) was
dissolved in THF (150mL) and degassed with nitrogen at rt for 10 minutes. Tetrakis
(triphenylphosphine) palladium(O) (1.46 g, 1.27 mmol, 0.07 eq.) and vinyltributylstannane
(7.47 mL, 23.5 mmol, 1.3eq.) were added and reaction mixture was stirred at 65°C for 3
hours. THF was evaporated and crude purified directly by flash chromatography using
49
cyclohexane/ethyl acetate (8/2) to give 2.3 g of the expected compound (Intermediate
as an orange oil. Amount: 2.3g; Yield: 81%; Formula: C9H7N3; HPLC Purity: 98%; HPLC
(HZO TFA 0.1%-ACN TFA Q.05%): Rt (min); Area % = 1.32 min; 98%; 1H NMR
(DMSO-d6) 8 9.10 (s, 1H), 8.98 (s, 1H), 8.46 (d, 1H, J=8Hz), 7.95 (d, 1H, J= 8Hz), 6.90
(dd, 1H, Jtrans=17Hz, Jcis- lOHz), 6.50 (dd, 1H, WMTHz, Jgem=1.5Hz), 5.80 (dd, 1H,
Jcis-10Hz, Jg.m=1.5Hz). LC-MS: M/Z ESI: Rt (min) 0.78 min, 158.13 (M+l).
Intermediate 4.4 : Pyrido[2,3-b1pvrazine-6-carbaldehyde (Scheme 9)
6-vinylpyrido[2,3-b]pyrazine (Intermediate 4.3) (1 g, 6.37 mmol, 1 eq.) was dissolved in
methanol (20 mL) and cooled down to -70°C. A gentle flux of a mixture of oxygen/ozone
was then bubbled through for 20 minutes. The reaction was monitored by TLC using
cyclohexane/ethyl acetate (8/2). When the reaction was finished, dimethylsulfide (0.1 mL)
was added and reaction was left at rt for 30 minutes. Methanol was evaporated under
vacuum and 600mg of pyrido[2,3-b]pyrazine-6-carbaldehyde was recovered. Crude
material was analyzed without further purification (Intermediate 4.4). Amount: 0.60 g;
Yield: 60 %; Formula: C8H5N3O; HPLC Purity: 90%; HPLC CH^O TFA 0.1%-ACN TFA
Q.05%): Rt (min); Area % - 0.90 min; 90%: 1H NMR (DMSO-d6) 8 10.1 (1, 1H), 9.05 (s,
1H), 8.95 (s, 1H), 8.70 (d, 1H, J=8Hz), 8.20 (d, 1H, J= 8Hz); LC-MS: M/Z ESI: Rt (min)
0.76 min, 158.13 (M+l).
Intermediate 5.1: 5-Methyl-2-trimethylsilanvl-furo[3,2-b1pyridine (Scheme 11)
To a degased solution of 6-iodo-2-pjcolin-5-ol (855 mg; 3.64 mmol; 1.00 eq.) in
triethylamine (20.00 mL) were added (trimethylsilyl)acetylene (1 g; 10.19 mmol; 2.80 eq.),
cuprous iodide (90.07 mg; 0.47 mmol; 0.13 eq.) and dichlorobis(triphenyl phosphine)
palladium(II) (229.82 mg; 0.33 mmol; 0.09 eq.) . The solution was heated under reflux.
After 3h, the reaction was complete, and allowed to cool down to rt. The solution was
filtered over celite (washed with AcOEt and MeOH). The solvents were removed. AcOEt
and water were added and the combined organic layers were dried over magnesium sulfate,
filtered and concentrated to give the expected compound. The crude was purified by short
flash chromatography using cyclohexane then AcQEt/Cyclohexane 20/80 to afford 603 mg
50
of the desired compound as a solid (Intermediate 5.1). Amount: 603 mg; Yield: 81 %;
Formula: C11H15NOSJ; HPLC Purity: 93.14%; HPLC (H?O TFA 0.1%-ACN TFA
0.05%): Rt (min); Area % = 2.17 min; 93.14%; 1HNMR(CDC13) 6 7.65 (d, 1H, J=8.5Hz),
7.10 (s, 1H), 7.06 (d, 1H, J=8.5Hz), 2.67 (s, 3H), 0.36 (s, 9H); LC-MS: M/Z ESI: Rt (min)
1.89 min, 206.06 (M+l).
Intermediate 5.2; 2-Trimethylsilanyl-furo[3,2-b1pvridine-5-carbaldehvde (Scheme 11)
To a solution of 5-methyl-2-(trimethylsilyl)furo[3,2-b]pyridine (Intermediate 5.1) (600
mg; 2.92 mmol; 1 eq.) in 1,2-dichlorobenzene (12 mL) was added selenium dioxide (486
mg; 4.38 mmol; 1.5 eq.). The reaction mixture was heated under microwave at 220°C for
6h. The solution was concentrated under vacuum. Et2O was added and the black solid was
filtered. The filtrate was concentrated and purified by flash chromatography using
cyclohexane then cyclohexane/AcOEt 90/10 affording a solid (Intermediate 5.2). Amount:
130mg; Yield: 20 %; Formula: CllH13NO2Si; HPLC Purity: 81.8%; HPLC (HZO TFA
0.1%-ACN TFA Q.05%): Rt (min); Area % = 3.84 min; 81.83%; 1HNMR(CDCU)6 10.19
(s, 1H), 7.99 (d, 1H, J=8.50Hz), 7.89 (d, 1H, J=8.50Hz), 7.27 (s, 1H), 0.40 (s, 9H); LC-MS:
M/Z ESI: Rt (min) 1.86 min, 220 (M+l).
General procedures for the synthesis of intermediates 6 to 16.3:
General procedure I for substitution of intermediate P5d with R2NHi (Scheme 12):
A solution of 2,6-dibromo-3-nitropyridine (Intermediate 6 of formula P5d wherein Hal is
Br and R1 is H) (1 eq.), arylamine (1,0-1.2 eq.), and triethylamine (2 eq.) in ethanol (5
mL/mmol) is stirred for 48 h at ambient temperature. Filtration of the resulting precipitate
furnishes the respective substitution product with high purity.
General procedure II for reduction (Scheme 12):
A mixture of the bromopyridine (1 eq.), indium powder (3-6 eq.), saturated aqeous
ammonium chloride (8 ml/mmol), and ethanol (20 ml/mmol) is sirred under reflux for 4 h.
Filtration through Celite® and concentration of the filtrate in vacuo is followed by basic
51
extraction. The organic layer is dried over sodium sulfate and concentrated in vacuo. The
resulting corresponding diaminopyridine is used in the next step without further
purification.
General procedure III for cyclization (Scheme 12);
A mixture of diaminopyridine (1 eq.), formamidine acetate (3-5 eq.), and 2-methoxyethanol
(30 ml/mmol) is sirred under reflux for 15 h. The mixture is concentrated in vacuo and
chromatographically purified (EtOAc/hexane gradient) to yield the corresponding
bromoimidazo[4,5-6]pyridine.
General procedure IV for coupling (Scheme 12):
A solution of bromoimidazo[4,5-6]pyridine (1 eq.), tributyl(vinyl)tin (1.5-3 eq.), and
tetrakis(triphenylphosphine)palladium(0) (0.1 eq.) in toluene (deoxygenated with Na, 20
ml/mmol ml) is stirred under reflux for 4 h. Concentration in vacuo and chromatographic
purification (EtOAc/hexane gradient) yields the corresponding vinylimidazo[4,5-
Z>]pyridine.
General procedure V for oxidation of intermediate 4 (Scheme 13):
A mixture of vinylimidazo[4,5-6]pyridine (1 eq.), osmium tetroxide (0.1 eq.), sodium
periodate (3-4 eq.), 1,4-dioxane (30 ml/mmol), and water (25 ml/mmol) is stirred for 15-30
min at ambient temperature. The resulting slurry is diluted with even amounts of water and
ethyl acetate. After filtration through Celite®, the organic phase is dried over sodium
sulfate, concentrated in vacuo and purified via flash chromatography to yield the respective
formylimidazo[4,5-6]pyridine.
O2N
52
Intermediate 6: 2,6-dibromo-3-nitropyridine (Scheme 12)
A mixture of commercially available 2,6-dichloro-3-nitropyridine (10.0 g; 51.8 mmol) and
33 w% HBr/AcOH (120 mL) is heated at 80°C for 3h. The solution is concentrated in
vacuo, the resulting residue is taken into EtOAc and ished with saturated aqueous sodium
bicarbonate. The organic phase is dried over sodium sulfate and concentrated in vacuo. The
resulting product 14.4 g (99%) is used without further purification (Intermediate 6).
GC/MS: 94% purity, tR 7.56 min (tR(SM) 6.93 min), m/z (Cs^B^) 280/282/284 (M, 38),
222/224/226 (35), 76 (100) Finnegan LCQ.
Intermediate 7.1: TV-CS-bromo^-nitrophenyD-TV-phenylaniine (Scheme 12)
The title compound is obtained from 2,6-dibromo-3-nitropyridine (Intermediate 6) and
aniline in 95% yield following general procedure I (Intermediate 7.1). GC/MS: 99%
purity, tR 9.28 min (tR(SM: nitropyridine) 7.62 min), m/z 293/295 (M, 12), 168 (25), 140 (25),
(100) Finnegan LCQ.
Intermediate 7.2; 6-Bromo-7V2-phenvlpyridine-2,3-diamine (Scheme 12)
The title compound is obtained from AL(5-bromo-2-nitrophenyl)-./V-phenylamine
(Intermediate 7.1) in 97% following general procedure II. GC/MS: 99% purity, tR 9.69
min (tR(SM) 9.27 min), m/z 263/265 (M, 45), 183 (19), 104 (18), 92 (23), 77 (42) Finnegan
LCQ.
53
Intermediate 7.3: 5-Bromo-3-phenyl-3//-imidazo[4,5-l>1pvridine (Scheme 12)
The title compound is obtained from 6-Brorno-Ar2-phenylpyridine-2,3-diamine
(Intermediate 7.2) in 71% yield following general procedure III. GC/MS: 99% purity, tR
9.23 min (tR(SM) 9.72 min), m/z 273/275 (M, 55), 194 (36), 167 (30), 77 (100) Finnegan
LCQ.
Intermediate 7.4: 3-Phenyl-5-vinvl-3//-imidazof4,5-l>1pvridine (Scheme 12)
The title compound is obtained from 5-bromo-3-phenyl-3//-imidazo[4,5-6]pyridine
(Intermediate 7.3) in 92% yield following general procedure IV. GC/MS: 97% purity, tR
8.94 min (tR(SM) 9.23 min), m/z 221 (M, 100), 77 (58) Finnegan LCQ.
CHO
Intermediate 7.5: 3-Phenyl-3flr-imidazof4,5-Z>lpvridine-5-carbaldehyde (Scheme 13)
The title compound is obtained from 3-phenyl-5-vinyl-3//-imidazo[4,5-Z»]pyridine
(Intermediate 7.4) in 36% yield following general procedure V. GC/MS: 97% purity, tR
9.20 min (tR(SM) 9.04 min), m/z 223 (M, 55), 195 (63), 77 (100) Finnegan LCQ.
54
Intermediate 8.1: A^5-Bromo-2-nitrophenyl)-7V-(3,5-dimethoxyphenyr)amine
(Scheme 12)
The title compound is obtained from commercially available 2,6-dibromo-3-nitropyridine
and 3,5-dimethoxyaniline in 85% yield following general procedure I. HPLC (over lOmin
10-85% MeCN/lOOmM aq. NaOAc): 98% purity, tR 10.12 min (tR(SM: nitropyridine) 7.98 min).
GC/MS: 99% purity, tR 10.88 min (tR(SM: nitropyridine) 7.50 min), m/z 253/255 (M, 100), 228
(72), 122 (41), 77 (53) Finnegan LCQ. !H-NMR (400 MHz, DMSO-d6): 5 10.04 (s, 1H),
8.42 (d, 1H), 7.19 (d, 1H), 6.94 (s, 2H), 6.33 (s, 1H), 3.76 (s, 6H) ppm.
Intermediate 8.2: 6-Bromo-7V -(3,5-dimethoxyphenyl)pyridine-2,3-diamine (Scheme
12}
The title compound is obtained from Ar-(5-Bromo-2-nitrophenyl)-A/-(3,5-dimethoxyphenyl)
amine (Intermediate 8.1) in 93% yield using genral procedure II. HPLC (over lOmin 10-
85% MeCN/lOOmM aq. NaOAc): 96% purity, tR 8.38 min (tR(SM) 10.12 min). GC/MS: 97%
purity, tR 11.47 min (tR(SM) 10.15 min), m/z 323/325 (M, 100), 310/308 (33), 292/294 (39)
Finnegan LCQ.
55
Intermediate 8.3: 5-Bromo-3-(3,5-dimethoxvphenvl)-3/r-imidazo[4,5-A1pyridine
(Scheme 12)
The title compound is obtained from 6-Bromo-jV2-(3,5-dimethoxyphenyl)pyridine-2,3-
diamine (Intermediate 8.2) in 43% yield following general procedure III. HPLC (over 10
min 10-85% MeCN/lOOmM aq. NaOAc): 98% purity, tR 8.51 min (tR(SM) 8.40 min).
GC/MS: 98% purity, tR 10.56 min (tR(sM) 11.47 min), m/z 333/335 (M, 79), 207 (100)
Finnegan LCQ.
Intermediate 8.4: 3-(3,5-Dimethoxyphenyl)-5-vinyl-3/?-imidazo[4,5-l)1pvridine
(Scheme 12)The title compound is obtained from 5-bromo-3-(3,5-dimethoxyphenyl)-3//-imidazo[4,5-
Z>]pyridine (Intermediate 8.3) in 57% yield following general procedure IV. HPLC (over
lOmin 10-85% MeCN/lOOmM aq. NaOAc): 99% purity, tR 8.39 min (tR(SM) 8.51 min).
GC/MS: 99% purity, tR 10.36 min (tR(SM) 10.56 min), w/z281 (M, 100) Finnegan LCQ.
Intermediate 8.5: 3-(3,5-Dimethoxyphenyl)-3//-imidazo[4,,5-l>1pvridine-5-
carbaldehyde (Scheme 13)
The title compound is obtained from 3-(3,5-dimethoxyphenyl)-5-vinyl-3//-imidazo[4,5-
Z>]pyridine (Intermediate 8.4) in 56% yield following general procedure V. HPLC (over
lOmin 10-85% MeCN/lOOmM aq. NaOAc): 98% purity, tR 7.26 min (tR(SM) 8.39 min).
GC/MS: 99% purity, tR 10.32 min (tR(sM) 10.36 min), w/z283 (M, 100) Finnegan LCQ.
56
Intermediate 9.1; Tert-butvl 5-[(5-bromo-2-nitrophenyl)amino1indoline-l-carboxvlate
(Scheme 12)
The title compound is obtained from 2,6-dibromo-3-nitropyridine and ter/-butyl 5-
aminoindoline-1-carboxylate (derived from commercially available 5-nitroindoline via protection and subsequent reduction of the nitro group with Ha/Pd/C in MeOH/EtOAc)
in 97% yield following general procedure I. HPLC (over lOmin 10-85% MeCN/0.1%
TFA/H2O): 99% purity, tR 10.35 min (tR(sM: nitropyridine) 6.79 min). 'H-NMR (400 MHz,
CDC13): 8 10.16 (s, 1H), 8.31 (d, 1H), 7.86 (br s, 0.4H), 7.49 (s, 1H), 7.45 (br s, 0.6H), 7.31
(d, 1H), 6.92 (d, 1H), 4.03 (br t, 2H), 3.14 (t, 2H), 1.56 (s, 9H) ppm. MS (ESI) m/z
(C18H19O4BrN4) 435.2/437.1 (M+l, 100) Finnegan LCQ.
Intermediate 9.2: Tert-butyl 5-[(3-amino-6-bromopyridin-2-yl)amino1indoline-lcarboxylate
(Scheme 12)
The title compound is obtained from tert-buty\ 5-[(5-bromo-2-nitrophenyl)amino]indoline-
1-carboxylate (Intermediate 9.1) in 96% yield following general procedure II. HPLC (over
57
lOmin 10-85% MeCN/lOOmM aq. NaOAc): 98% purity, tR 9.86 min (tR(SM) 11.66 min). MS
(ESI) w/z(C18H21BrN4O2) 405.1/407.0 (M+l, 100), 349.1/351.1 (82) Finnegan LCQ.
Intermediate 9.3: Tgr/-butyl 5-(5-bronio-3flr-iiTiidazo[4,5-/!>1pvridin-3-vl)indoline-lcarboxylate
(Scheme 12)
The title compound is obtained from tert-butyl 5-[(3-amino-6-bromopyridin-2-
yl)amino]indoline-l-carboxylate (Intermediate 9.2) in 91% yield following general
procedure III. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 97% purity, tR
10.08 min (tR(SM) 9.85 min). MS (ESI) m/z (Ci9Hi9BrN4O2) 415.0/416.9 (M+l, 91),
359.1/361.0 (100), 315.1/317.2 (51) Finnegan LCQ.
Intermediate 9.4: Tert-butyl 5-(5-vinyl-3//-imidazo[4,5-/>1pyridin-3-vl)indoline-lcarboxylate
(Scheme 12)
The title compound is obtained from tert-buty\ 5-(5-bromo-3//-imidazo[4,5-6]pyridin-3-
yl)indoline-l-carboxylate (Intermediate 9.3) in 94% yield following general procedure IV.
HPLC (over lOmin 10-85% MeCN/0.1% TFA/H2O): 96% purity, tR 7.21 min (tR(SM) 8.51
min). 'H-NMR (400 MHz, CDC13) 5 8.21 (s, 1H), 8.04 (d, 1H), 7.98 (br s, 0.5H), 7.56 (s,
58
1H), 7.55 (br s, 0.5H), 7.48 (d, 1H), 7.35 (d, 1H), 6.89 (dd, 1H), 6.19 (d, 1H), 5.42 (d, 1H),
4.05 (t, 2H), 3.18 (t, 2H), 1.55 (s, 9H) ppm.
Intermediate 9.5: Tgrt-butyl 5-(5-formvl-3//-imidazof4,5-/>1pyridin-3-yr)indoline-lcarboxylate
(Scheme 13)
The title compound is obtained from tert-buty\ 5-(5-vinyl-3//-imidazo[4,5-i]pyridin-3-
yl)indoline-l-carboxylate (Intermediate 9.4) in 69% yield following general procedure V.
HPLC (over lOmin 10-85% MeCN/0.1% TFA/H2O): 96% purity, tR 7.31 min (tR(sM) 7.21
min).
Intermediate 10.1: 3-(23-dihydro-l//-indol-5-vl)-5-vinyl-3//-imidazo[4,5-l>1Pvridine
(Scheme 12)
A mixture of tert-buty\ 5-(5-vinyl-3//-imidazo[4,5-Z>]pyridin-3-yl)indoline-l-carboxylate
(Intermediate 9.4) (9.50 g, 26.21 mmol) (intermediate 9.4), 4 M HC1 in 1,4-dioxane (200
ml), 2-propanol (30 ml), and dioxane (50 ml) is stirred for 1.5 h at ambient temperature.
The mixture is concentrated to dryness to furnish 9.50 g (98% yield) of the trihydrochloride
salt of the corresponding free amine. HPLC (over lOmin 10-85% MeCN/lOOmM aq.
NaOAc): 99% purity, tR 6.64 min (tR(SM) 10.06 min). 'H-NMR (400 MHz, methanol-d4) 5
9.97 (s, 1H), 8.34 (d, 1H), 8.12 (d, 1H), 8.04 (d, 1H), 7.85 (d, 1H), 7.82 (d, 1H), 7.63 (m,
59
1H), 7.54 (m, 1H), 6.98 (dd, 1H), 6.37 (d, 1H), 5.63. (d, 1H), 4.02 (t, 2H), 3.52 (t, 2H) ppm.
MS (ESI) m/z (C,6H,4N4) 263.2 (M+l, 100), 219.2 (32) Finnegan LCQ.
Intermediate 10.2: 3-(l-acetyl-2,3-dihYdro-l//-indol-5-vl)-5-vinyl-3//-imidazo[4,5-61
pyridine (Scheme 12)
A mixture of 3-(2,3-dihydro-l//-indol-5-yl)-5-vinyI-3//-imidazo[4,5-6]pyridine
(Intermediate 10.1) (150.0 mg, 0.57 mmol), glacial acetic acid (39.3 uJ, 0.69 mmol), Nethyl-
Af'-(3-dimethylaminopropyl)carbodiirnide hydrochloride (175.4 mg, 0.91 mmol), 4-
dimethylaminopyridine (419.2 mg, 3.43 mmol), and dichloromethane (10 ml) is stirred for
24 h at ambient temperature. The mixture is successively extracted with saturated aqueous
ammonium chloride and saturated aqueous sodium bicarbonate. The organic layer is dried
over sodium sulfate and concentrated in vacuo to render 139.1 mg (80%) of the respective
amide. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 99% purity, tR 6.43 min
(tR(SM) 6.64 min). GC/MS: 96% purity, tR 13.98 min, m/z 304 (M, 58), 262 (100), 207
Intermediate 10.3: 3-(l-acetyi-23-dihvdro-l//-indol-5-yl)-3/y-imidazo[4,5-l>1pvridine-
5-carbaldehyde (Scheme 13)
The title compound is obtained from 3-(l-acetyl-2,3-dihydro-l//-indol-5-yl)-5-vinyl-3//-
imidazo[4,5-£]pyridine (Intermediate 10.2) in 44% yield following general procedure V.
HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 95% purity, tR 5.38 min (tR(SM)
6.43 min). GC/MS: tR 14.98 min (tR(SM) 13.98 min), m/z 306 (M, 60), 264 (100) Finnegan
Intermediate 11.1: AfJV-dimethvl-Af-{4-oxo-4-f5-(5-vinvl-3g-imidazof4,5-61pyridin-3-
yl)-2,3-dihydro-l/y-indol-l-yl1butyl}amine (Scheme 12)
A mixture of 3-(2,3-dihydro-l//-indol-5-yl)-5-vinyl-3//-imidazo[4,5-6]pyridine (48.0 mg,
0.14 mmol) (Intermediate 10.1), 4-(dimethylamino)butyric acid hydrochloride (36.3 mg,
0.21 mmol), A^-ethyl-A^'-(3-dimethylaminopropyl)carbodiimide hydrochloride (54.9 mg,
0.29 mmol), 4-dimethylaminopyridine (122.5 mg, 1.00 mmol), and dichloromethane (8 ml)
is stirred for 24 h at ambient temperature. The mixture is successively extracted with
saturated aqueous ammonium chloride and saturated aqueous sodium bicarbonate. The
organic layer is dried over sodium sulfate and concentrated in vacuo to render 50.4 mg
(94%) of the respective amide. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc):
92% purity, tR 6.27 min (tR(SM) 6.61 min).
CHO
61
Intermediate 11.2: 3-{l-f4-(dimethylamino)butanoyl1-2,,3-dihydro-l//-indol-5-yl|-3/fimidazof4,5-
Z>1pyridine-5-carbaldehvde (Scheme 13)
The title compound is obtained from Ar
vAr-dimethyl-Ar-{4-oxo-4-[5-(5-vinyl-3//-
imidazo[4,5-Z>]pyridin-3-yl)-2,3-dihydro-l//-indol-l-yl]butyl}amine(Intermediate 11.1) in
45% yield following general procedure V. HPLC (over lOmin 10-85% MeCN/lOOmM aq.
NaOAc): 94% purity, tR 5.02 min (tR(SM) 6.27 min).
Intermediate 12.1: 3-[l-(methvlsulfonvl)-2,3-dihvdro-lJflr-indol-5-vl1-5-vinyl-3/rimidazof4,5-/>
1pyridine (Scheme 12)
A solution of 3-(2,3-dihydro-l#-indol-5-yl)-5-vinyl-3//-imidazo[4,5-&]pyridine (2.53 g,
9.64 mmol) (Intermediate 10.1), methanesulfonyl chloride (1.12 ml, 14.47 mmol), and
triethylamine (2.94 ml, 21.22 mmol) in dichlpromethane (50 ml) is stirred for 30 min at
ambient temperature. The mixture is successively extracted with saturated aqueous
ammonium chloride and saturated aqueous sodium bicarbonate. The organic layer is dried
over sodium sulfate and concentrated in vacuo to render 3.24 g (99%) of the respective
sulfonamide. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 92% purity, tR 7.16
min (tR(SM) 6.64 min). MS (ESI) m/z (CnH^N^S) 341.1 (M+l, 100) Finnegan LCQ.
Intermediate 12.2: 341-(methvlsulfonvlV23-dihvdro-l#-indol-5-yl1-3#-imidazo[4,5-
&lpyridine-5-carbaldehyde (Scheme 13)
The tile compound is obtained from 3-[l-(methylsulfonyl)-2,3-dihydro-l//-indol-5-yl]-5-
vinyl-3//-imidazo[4,5-£]pyridine (Intermediate 12.1) in 60% yield following general
procedure V. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 98% purity, tR 6.13
min(tR(SM)7.16 min).
-ci
Intermediate 13.1: 3-{l-[(chloromethvl)sulfonvl1-2,3-dihvdro-l//-indol-5-vU-5-vinyl-
3//-imidazo[4,5-l>1pvridine (Scheme 12)
A solution of 3-(2,3-dihydro-l//-indol-5-yl)-5-vinyl-3//-imidazo[4,5-i]pyridine (2.57 g,
9.80 mmol) (Intermediate 10.1), chloromethanesulfonyl chloride (2.00 ml, 19.59 mmol),
and AyV-diisopropylethylamine (11.98 ml, 68.58 mmol) in dichloromethane (100 ml) is
stirred for 20 min at ambient temperature. The mixture is successively extracted with
saturated aqueous ammonium chloride and saturated aqueous sodium bicarbonate. The
organic layer is dried over sodium sulfate and concentrated in vacuo to give 3.61 g (98%)
of the respective sulfonamide. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc):
92% purity, tR 8.05 min (tR(SM) 6.64 min). 'H-NMR (400 MHz, DMSO-d6) 8 9.03 (s, 1H),
8.22 (d, 1H), 7.85 (s, 1H), 7.79 (d, 1H), 7.56 (m, 2H), 6.93 (dd, 1H), 6.25 (d, 1H), 5.50 (d,
1H), 5.41 (s, 2H), 4.21 (t, 2H), 3.28 (t, 2H) ppm. MS (ESI) m/z (Ci7Hi5ClN4O2S) 375.0
(M+l, 100)FinneganLCQ.
Intermediate 13.2: 3-{l-[(chloromethvl)sulfonvl1-2.3-dihydro-l^r-indol-5-vl|-3Jyimidazo[
4,5-f>1pyridine-5-carbaldehyde (Scheme 13)
The title compound is obtained from 3-{l-[(chloromethyl)sulfonyl]-2,3-dihydro-l//-indol-
5-yl}-5-vinyl-3//-imidazo[4,5-Z>]pyridine (Intermediate 13.1) in 86% yield following
general procedure V. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 97% purity,
tR 7.03 min (tR(SM) 8.05 min). MS (ESI) mlz (Ci6Hi3ClN4O3S) 377.0 (M+l, 100) Finnegan
Intermediate 14.1: 3-(l-[(3-chloropropvnsulfonvl1-2,3-dihydro-lJ:r-indol-5-yU-5-vinvl-
3/T-imidazo [4,5-61 pyridine (Scheme 12)
A solution of 3-(2,3-dihydro-l//-indol-5-yl)-5-vinyl-3//-imidazo[4,5-6]pyridine (270 mg,
1.03 mmol) (Intermediate 10.1), 3-chloropropanesulfonyl chloride (0.25 ml, 2.06 mmol),
and JV,./V-diisopropylethylamine (1.08 ml, 6.18 mmol) in dichloromethane (15 ml) is stirred
for 10 min at ambient temperature. The mixture is successively extracted with saturated
aqueous ammonium chloride and saturated aqueous sodium bicarbonate. The organic layer
is dried over sodium sulfate and concentrated in vacuo to render 351 mg (85%) of the
respective sulfonamide. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 92%
64
purity, tR 8.44 min (tR(SM} 6.59 min). MS (ESI) m/z (C,9Hi9ClN4O2S) 403.0 (M, 100), 294.9
(65) Finnegan LCQ.
Intermediate 14.2: 3-{l-[(3-morpholin-4-vlpropvl)sulfonvl1-2,3-dihydro-lJy-indol-5-
vU-5-vinvI-3/:Mmidazo [4,5-6] pyridine (Scheme 12)
A mixture of 3-{l-[(3-chloropropyl)sulfonyl]-2,3-dihydro-l//-indol-5-yl}-5-vinyl-3//-
imidazo[4,5-6]pyridine (Intermediate 14.1) (351 mg, 0.87 mmol), morpholine (0.46 ml,
5.23 mmol), potassium iodide (144.6 mg, 0.87 mmol), and JVyV-dimethylformamide (10 ml)
is stirred for 24 h at ambient temperature. The mixture is extracted with saturated aqueous
ammonium chloride and the organic layer is dried over sodium sulfate. Concentration in
vacuo furnishes 382 mg (97%) of the respective morpholino derivative. HPLC (over lOmin
10-85% MeCN/lOOmM aq. NaOAc): 91% purity, tR 8.44 min (tR(SM) 8.44 min). 'H-NMR
(400 MHz, CDC13) 5 8.32 (s, 1H), 8.09 (d, 1H), 7.68 (s, 1H), 7.55 (m, 2H), 7.41 (d, 1H),
6.90 (dd, 1H), 6.22 (d, 1H), 5.48 (d, 1H), 4.14 (t, 2H), 3.70 (m, 4H), 3.40-3.18 (m, 8H),
2.36 (m, 2H) ppm. MS (ESI) m/z (C23H27N5O3S) 454.0 (M, 10) Finnegan LCQ.
Intermediate 14.3; 3-U-[(3-morpholin-4-ylpropyl)sulfonvl1-2,3-dihvdro-l/?-indol-5-
yl|-3//-imidazof4,5-l)1pvridine-5-carbaldehyde (Scheme 13)
The title compound is obtained from 3-{l-[(3-morpholin-4-ylpropyl)sulfonyl]-2,3-dihydrol//-
indol-5-yl}-5-vinyl-3//-imidazo[4,5-Z>]pyridine (Intermediate 14.2) in 82% yield
following general procedure V. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): tR
7.55 min (tR(SM) 8.44 min). MS (ESI) m/z (C22H25N5O4S) 456.1 (M+l, 100) Finnegan LCQ.
Intermediate 15.1: Tert-butyl 6-[(5-bromo-2-nitrophenyl)amino1indoline-lcarboxylate
The title compound is obtained from 2,6-dibromo-3-nitropyridine and tert-butyl 6-
aminoindoline-1-carboxylate (derived from commercially available 6-nitroindoline via 7VBoc
protection and subsequent reduction of the nitro group with H2/Pd/C in MeOH/EtOAc)
in 51% yield following general procedure I. HPLC (over lOmin 10-85% MeCN/0.1%
TFA/H2O): 99% purity, tR 10.45 min (tR(SM: nitropyridine) 7.98 min). MS (ESI) m/z
(Ci8Hi9O4BrN4) 435.2/437.1 (M+l, 100) Finnegan LCQ.
Intermediate 15.2; Tert-butyl 6-K3-amino-6-bromopyridin-2-yl)amino1indoline-lcarboxylate
(Scheme 12)
The title compound is obtained from tert-buiy\ 6-[(5-bromo-2-nitrophenyl)amino]indoline-
1-carboxylate (Intermediate 15.1) in 98% yield following general procedure II. HPLC
66
(over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 99% purity, tR 9.72 min (tR(SM) 11.38
min). MS (ESI) m/z (Ci8H2,BrN4O2) 426.8/428.9 (M+Na+, 87), 405.1/407.0 (M+H+, 23),
349.1/351.0 (100), 305.1/307.1 (56) Finnegan LCQ.
Intermediate 15.3: Tert-butyl 6-(5-bromo-3.fir-iinidazof4,5-l>1pvridin-3-vl)indoline-lcarboxylate
(Scheme 12)
The title compound is obtained from tert-butyl 6-[(3-amino-6-bromopyridin-2-
yl)amino]indoline-l-carboxylate (Intermediate 15.2) in 76% yield following general
procedure III. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 99% purity, tR 9.78
min (tR(sM) 9.72 min). MS (ESI) m/z (Ci9Hi9BrN4O2) 415.0/416.9 (M+l, 74), 359.1/361.0
(100), 315.1/317.2 (51) Finnegan LCQ.
Intermediate 1S.4: Tert-butyl 6-(5-vinyi-3/?-imidazo[4,5-l>1pyridin-3-yl)indoline-lcarboxylate
(Scheme 12)
The title compound is obtained from tert-buty] 6-(5-bromo-37/-imidazo[4,5-6]pyridin-3-
yl)indoline-l-carboxylate (Intermediate 15.3) in 69% yield following general procedure
IV. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 99% purity, tR 9.76 min
(tR(sM) 9.78 min). MS (ESI) m/z (C21H2iN4O2) 363.0 (M+l, 100), 307.0 (92) Finnegan
Intermediate 15.5: Tert-butyl 6-(5-formyl-3flr-imidazo[4,5-61pyridin-3-vl)indoline-lcarboxylate
(Scheme 13)
The title compound is obtained from tert-bulyl 6-(5-vinyl-3//-imidazo[4,5-£]pyridin-3-
yl)indoline-l-carboxylate (Intermediate 15.4) in 95% yield following general procedure V.
HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 88% purity, tR 8.61 min (tR(SM)
9.76 min). MS (ESI) m/z (C2oH2oN4O3) 365.1 (M+l, 100) Finnegan LCQ.
Intermediate 16.1: 3-f2,3-dihydro-l/y-indol-6-vl)-5-vinyl-3/f-imidazo[4,5-61pvridine
(Scheme 12)
A mixture of ter/-butyl 6-(5-vinyl-3//-imidazo[4,5-6]pyridin-3-yl)indoline-l-carboxylate
(4.90 g, 13.52 mmol) (Intermediate 15.3), 4 M HC1 in 1,4-dioxane (200 ml), 2-propanol
(30 ml), and dioxane (50 ml) is stirred for 1 h at ambient temperature. The mixture is
concentrated to dryness to furnish 4.00 g (99% yield) of the monohydrochloride salt of the
corresponding free amine. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 99%
purity, tR 7.06 min (tR(SM) 9.78 min). MS (ESI) m/z (Ci6Hi4N4) 263.3 (M+l, 100) Finnegan
Intermediate 16.2: 3-[l-(methvlsulfonvl)-23-dihvdro-l#-indol-6-vll-5-vinyl-3#-
imidazo[4,5-/>1pyridine (Scheme 12)
A solution of 3-(2,3-dihydro-l//-indol-6-yl)-5-vinyl-3//-imidazo[4,5-6]pyridine
(Intermediate 16.1) (1.10 g, 4.19 mmol), methanesulfonyl chloride (0.65 ml, 8.39 mmol),
and triethylamine (3.49 ml, 25.16 mmol) in dichloromethane (50 ml) is stirred for 15 min at
ambient temperature. The mixture is successively extracted with saturated aqueous
ammonium chloride and saturated aqueous sodium bicarbonate. The organic layer is dried
over sodium sulfate and concentrated in vacuo to render 1.40 g (98%) of the respective
sulfonamide. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 99% purity, tR min (tR(SM) 7.06 min). MS (ESI) m/z (CnHieN^S) 341.0 (M+l, 100) Finnegan LCQ.
CHO
Intermediate 16.3: 3-[l-(methvlsulfonvl)-2,3-dihvdro-lflr-indoI-6-vl1-3flr-imidazo[4.5-
/>1pyridine-5-carbaldehyde (Scheme 13)
The title compound is obtained from 3-[l-(methylsulfonyl)-2,3-dihydro-l//-indol-6-yl]-5-
vinyl-3//-imidazo[4,5-6]pyridine (Intermediate 16.2) in 99% yield following general
procedure V. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 93% purity, tR 6.09
min (tR(SM) 7.03 min). MS (ESI) m/z (CieHnN^S) 343.0 (M+l, 100) Finnegan LCQ.
69
Example 1: (5Z)-5-{[4-(l-piperidinvl)pvrido[3,2-d1pvrimidin-6-vl1methylene)-l,3-
thiazolidine-2,4-dione potassium salt (1) (Scheme 2)
A mixture of 2,4-thiazolidinedione (3.4 g; 29.1 mmol; 1.80 eq.), pyrrolidine (269.80 uL;
3.2 mmol; 0.2 eq.) in MeOH (50 mL) was heated at 70°C. A solution of 4-(lpiperidinyl)
pyrido[3,2-d]pyrimidine-6-carbaldehyde (Intermediate 1.7) (3.9 g; 16.2 mmol;
1 eq.) in MeOH (50 mL) was slowly added over 1.5 hour at 70°C. After 2 h under reflux
after the addition, the reaction was complete. A precipitate was formed. The hot reaction
mixture was filtered and the solid was washed with cold MeOH to give (5Z)-5-{[4-(lpiperidinyl)
pyrido[3,2-d]pyrimidin-6-yl]methylene}-l,3-thiazolidine-254-dione (1) (2.70 g;
48%) as an orange powder in 98% HPLC purity.
(5Z)-5-{ [4-( 1 -piperidinyl)pyrido[3,2-d]pyrimidin-6-yl]methylene}-1,3-thiazolidine-2,4-
dione (2.7 g; 8.1 mmol; 1 eq.) was suspended in THF (80 mL) and water (80 mL).
Potassium hydroxide (16.2 mL; 0.50 M; 8.1 mmol; 1 eq.) was added and the solution was
filtered through cotton and rinsed with water. After lyophilization, (5Z)-5-{[4-(lpiperidinyl)
pyrido[3,2-d]pyrimidin-6-yl]methylene}-l,3-thiazolidine-2,4-dione potassium
salt (1) (3.06 g, 98%) was isolated as a yellow solid in 99.36% HPLC purity. Amount: 3.06
g; Yield: 99%; Melting point: 319° C; Formula: C16Hi4O2SN5.K; IR (neat) v 3355.1,
2932.9, 2852.7, 1674.1, 1519.6 cm'1; IH NMR (DMSO-d6) 8 1.68 (si, 6H), 4.34 (si, 4H),
7.44 (s, IH), 7.93 (d, J - 9 Hz, IH), 8.04 (d, J = 9 Hz, IH), 8.45 (s, IH); HPLC (HZO TFA
0.1%-ACNTFA0.05%): Rt (min); Area % - 2.07; 99.10; LC-MS: M/Z ESI: Rt (min) 1.36;
342.04 (M+l); 340.08 (M-l).
70
Example 2: f5Z)-5-|[4-(4-fluoro-l-piperidinvl)pyridof3,2-d1pvrimidin-6-vn
methylene|-l,3-thiazolidine-2,4-dione potassium salt (2) (Scheme 2)
The title compound was obtained following the general procedure described for Example using Intermediate 2.1, 4-(4-fluoro-piperidin-l-yl)-pyrido[3,2-d]pyrimidine-6-
carbaldehyde. After lyophilization, (5Z)-5-{[4-(4-fluoro-l-piperidinyl) pyrido[3,2-d]
pyrimidin-6-yl]methylene}-l,3-thiazolidine-2,4-dione potassium salt (2) was isolated as an
orange solid in 98.8% HPLC purity; Formula: Ci6H13FO2SN5.K; IH NMR (DMSO-d6) 8
1.86 (m, 2H), 2.07 (m, 2H), 4.39 (m, 4H), 5.00 (m, IH), 7.44 (s, IH), 7.97 (d, J = 9 Hz,
IH), 8.07 (d, J = 9 Hz, IH), 8.50 (s, IH); HPLC (H?O TFA Q.1%- ACN TFA Q.05%): Rt
(min); Area % = 1.92; 98.76; LC-MS: M/Z ESI: Rt (min) 1.27; 360.07 (M+1); 358.07
Example 3: (5Z)-5-({4-[4-ftrifluoromethyl)-l-piperidinvUpvrido[3,2-d1pvrimidin-6-
yl|methylene)-l,3-thiazolidine-2,4-dione potassium salt (3) (Scheme 2)
The title compound was obtained following the general procedure described for Example using Intermediate 3.1, 4-(4-(trifluoromethyl)-piperidin-l-yl)-pyrido[3,2-d]pyrimidine-6-
carbaldehyde. After lyophilisation, (5Z)-5-({4-[4-(trifluoromethyl)-l-piperidinyl]pyrido
71
[3,2-d]pyrimidin-6-yl}methylene)-l,3-thiazolidine-2,4-dione potassium salt (3) was
isolated as an orange solid in 99.5% HPLC purity; Formula: CnHuOaSFsNs.K; 1H NMR
(DMSO-d6) 8 1.39 (m, 2H), 1.76 (m, 2H), 2.59 (m, 1H), 3.05 (m, 2H), 5.44 (m, 2H), 7.24
(s, 1H), 7.76 (d, J = 9 Hz, 1H), 7.87 (d, J = 9 Hz, 1H), 8.30 (s, 1H); HPLC (HsO TFA 0.1 %-
ACN TFA 0.05%): Rt (min); Area % = 2.44; 8847; LC-MS: M/Z ESI: Rt (min) 1.55; 410.09
(M+l); 408.09 (M-l).
Example 4: 5-Pvrido[2,3-b1pyrazin-6-vlmethvlene-thiazolidine-2,4-dione (4) (Scheme
Pyrido[2,3-b]pyrazine-6-carbaldehyde (Intermediate 4.4) (300 mg, 1.89 mmol, 1 eq.), 2,5-
thiazolidinedione (397 mg, 3.4 mmol, 1.8 eq.) and pyrrolidine (0.03 mL, 0.38 mmol, 0.2
eq.) were heated in methanol (10 mL) for 3 hours at 65°C. When reaction was finished,
water (3 mL) was added and corresponding brown precipitate filtered off, washed with
methanol, water and then diethyl ether to give 200 mg of the pure expected compound (4).
From the free base (200 mg, 0.78 mmol, 1 eq.), a potassium salt was synthesized using
KOH (1M, V= 0.78 mL, leq.) to give 231 mg of the corresponding potassium salt.
Amount: 231mg (potassium salt); Yield: 41 %; Formula: C11H6O2SN4.K; HPLC Purity:
98.7% ; HPLC (HZO TFA Q.1%- ACN TFA Q.05%): Rt (min); Area % = 1.89 min; 98.7%;
1H NMR (DMSO-d6) d 9.09 (s, 1H), 8.95 (s, 1H), 8.46 (d, 1H, J=8Hz), 8.02 (d, 1H, J=
8Hz), 7.52 (s, 1H); LC-MS: M/Z ESI: Rt (min) 0.76 min, 259.07 (M+l).
5: 5-Furof3,2-b1pvridin-5-vlmethylene-thiazolidine-2,4-dione (5) (Scheme 4)
A solution of 2-(trimethylsilyl)furo[3,2-b]pyridine-5-carbaldehyde (Intermediate 5.2) (130
mg; 0.59 mmol; 1 eq.), 2,4-thiazplidinedione (125 mg; 1.07 mmol; 1.8 eq.) and betaalanine
(95 mg; 1.07 mmol; 1.8 eq.) in acetic acid (2 mL) was heated at 100°C for 7h.
Water was added and the precipitate was filtered and washed with EtjO to afford a solid
(purity: 98.14%, yield: 25%). Then (5Z)-5-{[2-(trimethylsilyl)furo[3,2-b]pyridin-5-yl]
methylene}-l,3-thiazolidine-2,4-dione (41 mg; 0.13 mmol; 1 eq.) was dissolved in MeOH
(5 mL). NaOH (5N aqueous) was added (150.00 jjl). The solution was stirred at rt. After 24
hours the reaction was complete. AcOH (ImL) was added and the solution was
concentrated in vacuum. Water was added and the precipitate was filtered, washed with
water, EtjO and MeOH to afford a solid (5). From the free base (24 mg, 0.097 mmol, 1 eq.),
a potassium salt was synthesized using KOH (1M, V= 0.097 mL, 1 eq.) affording 24 mg of
the corresponding potassium salt. Amount: 24 mg (potassium salt); Yield: 75 %; Formula:
C11H6N203S.K; HPLC Purity: 98.03%; HPLC (HZO TFA Q.1%- ACN TFA Q.05%): Rt
(min); Area % = 2.96 min; 98.03%; 1H NMR (DMSO-d6) 8 8.30 (s, 1H), 8.00 (d, 1H,
J=9Hz), 7.51 (d, 1H, J=9Hz), 7.37 (s, 1H), 7.13 (s, 1H); LC-MS: M/Z ESI: Rt (min) 1.31
min, 246.95 (M+l).
Example 6: 5-[4-(4-Fluoro-piperidin-l-yl)-pyrido[3,2-d1pvrimidin-6-vlmethvlene1-2-
thioxo-thiazolidin-4-one (Scheme 2)
The title compound was obtained following the general procedure described for Example 1,
using rhodanine (instead of thiazolidinedione) and Intermediate 2.1, 4-(4-fluoro-piperidinl-
yl)-pyrido[3,2-d]pyrimidine-6-carbaldehyde. After lyophilization, 5-[4-(4-Fluoropiperidin-
l-yl)-pyrido[3,2-d]pyrimidin-6-ylmethylene]-2-thioxo-thiazolidin-4-one
potassium salt (6) was isolated as an orange solid in 95.5% HPLC purity; Formula:
CifiHnFOS7Ns.K; IH NMR (DMSO-d6) S 1.89 (m, 4H), 4.42 (m, 4H), 5.00 (m, IH), 7.29
(s, IH), 8.07 (d, J = 9 Hz, 2H), 8.52 (s, IH); HPLC (HZO TFA 0.1%-ACN TFA Q.05%): Rt
(min); Area % - 2.37 min; 95.54%; LC-MS: M/Z ESI: Rt (min) 1.38 min; 376.11 (M+1);
374.1 l(M-l).
Example?; (5Z)-5-[(3-phenyl-3Jy-imidazo[4,5-&lpyridin-5-vnmethvlene1-l,3-
thiazolidine-2,4-dione (Scheme 5)
The title compound was obtained from 3-phenyl-3//-imidazo[4,5-6]pyridine-5-
carbaldehyde in 55% yield following general procedure described for Example 1. HPLC
(over 10 min 10-85% MeCN/lOOmM aq. NaOAc): 96% purity, tR 4.95 min. MS (ESI) m/z
74
(Ci6HioN4O2S) 361.2 (M+K+, 100). 'H-NMR (JEOL 400 MHz, DMSO-d6): 5 8.97 (s, IH),
8.23 (d, IH), 8.13 (d, 2H), 7.70-7.45 (m, 5H).
Example 8: Preparation of (5Z)-5-U3-(3,5-dimethoxyphenvl)-3/?-iniidazo[4,5-
61pvridin-5-vl1methylene}-l,3-thiazolidine-2,4-dione (Scheme 5)
The title compound is obtained from 3-(3,5-dimethoxyphenyl)-3//-imidazo[4,5-6]pyridine-
5-carbaldehyde in 85% yield following general procedure VI. HPLC (over lOmin 10-85%
MeCN/lOOmM aq. NaOAc): 96% purity, tR 5.12 min (tR(SM) 7.26 min). 'H-NMR (JEOL
400 MHz, DMSO-d6): S 8.90 (s, IH), 8.16 (d, IH), 7.58 (d, IH), 7.41 (s, IH), 7.24 (s, 2H),
6.60 (s, IH), 3.87(s, 6H).
Example 9: Tert-butyl 5-{5-[(Z)-(2,4-dioxo-l,3-thiazoiidin-5-viidene)methvl1-3/fimidazo[
4,5-61pyridin-3-vl|indoline-l-carboxvlate (Scheme 5)
(9)
The title compound is obtained from tert-buiyl 5-(5-formyl-3//-imidazo[4,5-Z>]pyridin-3-
yl)indoline-l-carboxylate in 65% yield following general procedure VI. HPLC (over 10
min 10-85% MeCN/0.1% TFA/H2O): 94% purity, tR 6.50 min (tR(SM) 7.31 min). 'H-NMR
75
(JEOL 400 MHz, DMSO-d6) 8 8.89 (s, 1H), 8.17 (s, 1H), 8.12 (d, 1H), 7.92 (br s, 0.5H),
7.88 (s, 1H), 7.59 (br s, 0.5H), 7.58 (d, 1H), 7.28 (d, 1H), 4.06 (br t, 2H), 3.24 (t, 2H), 1.54
(s, 9H) ppm. MS (ESI) m/z (C23H2oN5O4S) 464.1 (M+l, 100), 408.1 (60) Finnegan LCQ.
Example 10: (5Z)-5-U3423-dihvdro-l/^indol-5-vl)-3#-imidazo[4,5-A1pyridin-5-
yllmethylene|-l,3-thiazolidine-2,4-dione (Scheme 5)
(10)
A mixture of tert-buty\ 5-{5-[(Z)-(2,4-dioxo-l,3-thiazolidin-5-ylidene)methyl]-3//-
imidazo[4,5-6]pyridin-3-yl}indoline-l-carboxylate (35.0 mg, 75.5 mmol) (Example 9), 4
M HC1 in 1,4-dioxane (3 ml), and 2-propanol (1 ml) is stirred for 1.5 h at ambient
temperature. The mixture is concentrated to dryness, washed with water, and dried in vacuo
to furnish 27.3 mg (89% yield) of the monohydrochloride salt of the corresponding free
amine. HPLC (over 10 min 10-85% MeCN/100 mM aq. NaOAc): 98% purity, tR 4.44 min
(t^M) 6.23 min). 'H-NMR (JEOL 400 MHz, DMSO-d6) 8 9.03 (s, 1H), 8.33 (d, 1H), 8.01
(s, 1H), 7.96 (s, 1H), 7.91 (d, 1H), 7.75 (d, 1H), 7.34 (d, 1H), 3.97 (br s, 4H), 3.74 (t, 2H),
3.22 (t, 2H) ppm. MS (ESI) m/z (C18H13N5O2S) 364.1 (M+l, 100), 329.2 (21) Finnegan
Example 11: (5Z)-5-ir3-(l-acetvl-2,3-dihvdro-l^-indol-5-vn-3^r-imidazo[4,5-Z>1
pyridin-5-vl1methylene}-l,3-thiazolidine-2,4-dione (Scheme 5)
The title compound is obtained from 3-(l-acetyl-2,3-dihydro-l//-indol-5-yl)-3//-
imidazo[4,5-&]pyridine-5-carbaldehyde (intermediate 10.3) in 55% yield following general
procedure VI. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 99% purity, tR 4.46
min (tR(SM) 5.38 min). 'H-NMR (JEOL 400 MHz, DMSO-d6, 65 °C) 6 12.23 (br s, IH), 8.89
(s, IH), 8.27 (d, IH), 8.22 (br s, IH), 7.93 (s, IH), 7.90 (s, IH), 7.83 (d, IH), 7.70 (d, IH),
4.23 (t, 2H), 3.29 (t, 2H), 2.23 (s, 3H) ppm. MS (ESI) m/z (C^oH^NjOsS) 406.3 (M+1, 100)
Finnegan LCQ.
Example 12: f5Z)-5-[f3-{l-[4-(dimethvlamino)butanovn-2,3-dihvdro-ljy-indol-5-vll-
3/y-imidazof4,5-61pvridin-5-vl)methylene1-l,3-thiazolidine-2,4-dione
rH
(12)
The title compound is obtained from 3-{l-[4-(Dimethylamino)butanoyl]-2,3-dihydro-l//-
indol-5-yl}-3//-imidazo[4,5-6]pyridine-5-carbaldehyde (intermediate 11.2) in 78% yield
following general procedure VI. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc):
77
98% purity, tR 4.14 min (tR(SM) 5.02 min). 'H-NMR (JEOL 400 MHz, DMSO-d6) 8 8.94 (s,
IH), 8.28 (d, IH), 8.22 (d, IH), 7.98 (s, IH), 7.76 (br s, 3H), 4.23 (t, 2H), 3.45 (br s, mH),
3.31 (t, 2H), 2.71 (t, 2H), 2.59 (t, 2H), 2.52 (s, 6H), 1.88 (m, 2H) ppm. MS (ESI) mlz
(C24H24N6O3S) 477.1 (M+l, 100), 432.2 (49), 272.3 (19), 260.4 (21) Finnegan LCQ.
Example 13: (SZj-S-dS-H-fmethvlsulfonvn-l^-dihvdro-lg-indol-S-vn-Sjyimidazo[
4,5-61pvridin-5-vUmethylene)-l,3-thiazolidine-2,4-dione (Scheme 5)
(The title compound is obtained from 3-[l-(methylsulfonyl)-2,3-dihydro-l//-indol-5-yl]- imidazo[4,5-£]pyridine-5-carbaldehyde (intermediate 12.2) in 62% yield following general
procedure VI. HPLC (over lOmin 10-85% MeCN/lOOmM aq. NaOAc): 99% purity, tR 4.80
min (tR(SM) 6.13 min). 'H-NMR (JEOL 400 MHz, DMSO-d6) 8 8.97 (s, IH), 8.32 (d, IH),
7.96 (s, 2H), 7.87 (d, IH), 7.74 (d, IH), 7.45 (d, IH), 4.09 (t, 2H), 3.28 (t, 2H), 3.10 (s, 3H)
ppm. MS (ESI) m/z (C^H^NjC^Sa) 442.1 (M+l, 100), 363.0 (27), 291.3 (22).
78
Example 14: Preparation of (5Z)-5-[(3-(l-[(chloromethvnsuIfonvl1-23-dihvdro-l/findol-
5-vU-3/f-imidazof4,5-61pyridin-5-yl)methylene1-l,3-thiazolidine-2,4-dione
(Scheme 5)
(14)
The title compound is obtained from 3-{l-[(chloromethyl)sulfonyl]-2,3-dihydro-l//-indol-
5-yl}-3//-imidazo[4,5-6]pyridine-5-carbaldehyde (intermediate 13.2) in 60% yield
following general procedure VI. HPLC (over 10 min 10-85% MeCN/100 mM aq. NaOAc):
99% purity, tR 5.37 min (tR(SM) 7.03 min). 'H-NMR (JEOL 400 MHz, DMSO-d6) 6 8.92 1H), 8.31 (d, 1H), 7.98 (d, 2H), 7.88 (d, 1H), 7.75 (d, 1H), 7.52 (d, 1H), 5.38 (s, 2H), 4.22
(t, 2H), 3.30 (t, 2H) ppm. MS (ESI) m/z (CigHuClNsC^) 477.0 (M+l, 100) Finnegan
LCQ.
Example 15: (5Z)-5-f(3-ll-[P-morpholin-4-vlprQpvnsulfonvl1-2,3-dihvdro-l^-indol-5-
yl)-3^-imidazo[4,5-61pvridin-5-yl)methvlene1-l,3-thiazolidine-2,4-dione (Scheme 5)
(15)
79
The title compound is obtained from 3-{l-[(3-morpholin-4-ylpropyl)sulfonyl]-2,3-dihydrol//-
indol-5-yl}-3//-imidazo[4,5-6]pyridine-5-carbaldehyde in 39% yield following general
procedure VI. HPLC (over 10 min 10-85% MeCN/100 mM aq. NaOAc): tR 5.50 min (tR(SM)
7.55 min). 'H-NMR (JEOL 400 MHz, DMSO-d6) 5 8.93 (s, IH), 8.22 (s, IH), 8.20 (s, IH),
7.85 (d, IH), 7.66 (d, IH), 7.56 (s, IH), 7.42 (d, IH), 4.13 (t, 2H), 3.74 (m, 2H), 3.50-3.20
(m, 12H), 2.18 (m, 2H) ppm. MS (ESI) m/z (C^H^NsOsS) 454.0 (M, 10) Finnegan LCQ.
Example 16: Ter/-butvl 6-|5-[(Z)-(2,4-dioxo-l,3-thiazolidin-5-vlidene)methvl1-3jyimidazof4,5-
l>1pvridin-3-vUindoline-l-carboxvlate (Scheme 5)
(16)
The title compound is obtained from tert-butyl 6-(5-formyl-3//-imidazo[4,5-6]pyridin-3-
yl)indoline-l-carboxylate in 22% yield following general procedure VI. HPLC (over 10
min 10-85% MeCN/100 mM aq. NaOAc): 99% purity, tR 6.49 min (tR(SM) 8.61 min). *HNMR
(JEOL 400 MHz, DMSO-d6) 5 8.87 (s, IH), 8.24 (d, IH), 8.02 (br d, IH), 7.74 (d,
IH), 7.72 (s, IH), 7.50 (br s, IH), 7.41 (d, IH), 4.05 (t, 2H), 3.20 (t, 2H), 1.45 (s, 9H) ppm.
MS (ESI) m/z (C23H2oN504S) 464.0 (M+l, 100), 408.1 (42) Finnegan LCQ.
Example 17: (5Z)-5-(|3-[l-(methvlsulfonvn-2,3-dihvdro-lJg-indol-6-yl]-3fir-iinidazo
[4,5-f>1 pyridin-5-yl|tnethyleneVl,3-thiazolidine-2,4-dione (Scheme 5)
The title compound is obtained from 3-[l-(methylsulfonyl)-2,3-dihydro-l//-indol-6-yl]-3//-
imidazo[4,5-£]pyridine-5-carbaldehyde in 29% yield following general procedure VI.
HPLC (over 10 min 10-85% MeCN/100 mM aq. NaOAc): 99% purity, tR 4.68 min (tR(SM)
6.09 min). 'H-NMR (JEOL 400 MHz, DMSO-d6) 5 8.87 (s, 1H), 8.17 (d, 1H), 7.82 (d, 1H),
7.65-7.50 (m, 3H), 7.42 (s, 1H), 4.09 (t, 2H), 3.24 (t, 2H), 3.15 (s, 3H) ppm. MS (ESI) m/z
(Ci9H15N5O4S2) 442,0 (M+l, 100), 362.8 (21) Finnegan LCQ.
Example 18: Biological assays
The compounds of the present invention may be subjected to the following assays:
a) High Throughput PI3K lipid kinase assay (binding assay):
The efficacy of compounds of the invention in inhibiting the PI3K induced-lipid
phosphorylation may be tested in the following binding assay.
The assay combines the scintillation proximity assay technology (SPA, Amersham) with
the capacity of neomycin (a polycationic antibiotic) to bind phospholipids with high
affinity and specificity. The Scintillation Proximity Assay is based on the properties of
weakly emitting isotopes (such as 3H, 1251,33P). Coating SPA beads with neomycin allows
the detection of phosphorylated lipid substrates after incubation with recombinant PI3K and
radioactive ATP in the same well, by capturing the radioactive phospholipids to the SPA
beads through their specific binding to neomycin.
To a 384 wells MTP containing 5 |il of the test compound of Formula (I) (solubilized in 6%
DMSO; to yield a concentration of 100, 30, 10, 3, 1,0.3, 0.1, 0.03, 0.01, 0.001 uM of the
test compound), the following assay components are added. 1) 5 ul (58 ng) of Human
recombinant GST-PI3Ky (in Hepes 40 mM, pH 7.4, DTT 1 mM and ethylenglycol 5%) 2)
10 ul of lipid micelles and 3) 10 ul of Kinase buffer ([33P]y-ATP 45uM/60nCi, MgCl2
30mM, DTT ImM, (3-Glycerophosphate ImM, Na3VO4 100 uM, Na Cholate 0.3 %, in
Hepes 40 mM, pH 7.4). After incubation at room temperature for 180 minutes, with gentle
agitation, the reaction is stopped by addition of 60 ul of a solution containing 100 ug of
neomycin-coated PVT SPA beads in PBS containing ATP lOmM and EDTA 5mM. The
assay is further incubated at room temperature for 60 minutes with gentle agitation to allow
binding of phospholipids to neomycin-SPA beads. After precipitation of the neomycincoated
PVT SPA beads for 5 minutes at 1500 x g, radioactive PtdIns(3)P is quantified by
scintillation counting in a Wallac MicroBeta ™ plate counter.
The values indicated in Table I below refer to the ICso (nM) with respect to PI3Ky, i.e. the
amount necessary to achieve 50% inhibition of said target. Said values show a considerable
inhibitory potency of thiazole compounds with regard to PI3Ky.
Examples of inhibitory activities for compounds of of the invention are set out in Table I
below.
Table I: ICso values of thiazole derivatives against PI3Ky.

b) Cell based ELISA to monitor PI3K inhibition:
The efficacy of compounds of the invention in inhibiting the PI3K induced Akt/PKB
phosphorylation may be tested in the following cell based assay.
Measurement of Akt/PKB phosphorylation in macrophages after stimulation with
Complement 5a: Raw 264: Raw 264-7 macrophages (cultured in DMEM-F12 medium
containing 10% Fetal Calf serum and antibiotics) are plated at 20'000 cells/well in a 96
MTP 24 h before cell stimulation. Previous to the stimulation with 50 nM of Complement
5a during 5 minutes, Cells are serum starved for 2h, and pretreated with inhibitors for 20
minutes. After stimulation cells are fixed in 4% formaldehyde for 20 minutes and washed 3
times in PBS containing 1% Triton X-100 (PBS/Triton). Endogenous peroxidase is blocked
by a 20 minutes incubation in 0.6% FfeC^ and 0.1% Sodium Azide in PBS/Triton and
washed 3 times in PBS/Triton. Cells are then blocked by 60 minutes incubation with 10%
fetal calf serum in PBS/Triton. Next, phosphorylated Akt/PKB is detected by an overnight
incubation at 4°C with first antibody (anti phospho Serine 473 Akt IHC, Cell Signaling)
diluted 800-fold in PBS/Triton, containing 5% bovine serum albumin (BSA). After 3
washes in PBS/Triton, cells are incubated for 60 minutes with a peroxidase conjugated
goat-anti-rabbit antibody (1/400 dilution in PBS/Triton, containing 5% BSA), washed 3
times in PBS/Triton, and 2 times in PBS and further incubated in 100 \i\ of substrate
reagent solution (R&D) for 20 minutes. The reaction is stopped by addition of 50 ul of 1 M
SC>4H2 and absorbance is read at 450 nm.
The values indicated in Table II below reflect the percentage of inhibition of AKT
phoshorylation as compared to basal level. Said values show a clear effect of the thiazole
compounds on the activation of AKT phosphorylation in macrophages.
83
Examples of inhibitory activities for compounds of the invention are set out in Table II
below.
Table II: ICso values of thiazole derivatives in Cell Assay
Example No
Example 19: Thioglycollate-induced peritoneal cavity cell recruitment model
The in vivo efficacy of compounds of the invention in inhibiting the migration of
leukocytes upon intraperitoneal challenge of thioglycollate may be tested with the
following assay.
Experimental Protocol:
8-10 weeks old female C3H mice were fasted during 18 hours. 15 minutes prior the
intraperitoneal injection of thioglycollate (1.5%, 40 ml/kg), the mice were treated orally
with Pyridine methylene azolidinones of Formula (I). Control mice received CMC/Tween
as vehicle (10 ml/kg). The mice were then sacrificed by CC>2 inhalation and the peritoneal
cavity was washed two times with 5 ml of ice-cold PBS/1 mM EDTA. The lavages were
done 4hrs or 48 hrs after thioglycollate challenge to evaluate neutrophils or macrophages
recruitment, respectively. The white blood cells (neutrophils, lymphocytes or macrophages)
were counted using a Beckman Coulter ® ACT Sdiff™. Dexamethasone was used as
reference drug.
Example 20: Preparation of a pharmaceutical formulation
Formulation 1 - Tablets
A compound of Formula (I) is admixed as a dry powder with a dry gelatin binder in an
approximate 1:2 weight ration. A minor amount of magnesium stearate is added as a
lubricant. The mixture is formed into 240-270 mg tablets (80-90 mg) of active pyridine
methylene azolidinone compound per tablet) in a tablet press.
Formulation 2 - Capsules
A compound of Formula (I) is admixed as a dry powder with a starch diluent in an
approximate 1:1 weight ratio. The mixture is filled into 250 mg capsules (125 mg of active
pyridine methylene azolidinone compound per capsule),
Formulation 3 - Liquid
A compound of Formula (I) (1250 mg), sucrose (1.75 g) and xanthan gum (4 mg) are
blended, passed through a No. 10 mesh U.S. sieve, and then mixed with a previously
prepared solution of microcrystalline cellulose and sodium carboxymethyl cellulose (11:89,
50 mg) in water. Sodium benzoate (10 mg), flavor, and color are diluted with water and
added with stirring. Sufficient water is then added to produce a total volume of 5 mL.
Formulation 4 - Tablets
A compound of Formula (I) is admixed as a dry powder with a dry gelatin binder in an
approximate 1:2 weight ratio. A minor amount of magnesium stearate is added as a
lubricant. The mixture is formed into 450-900 mg tablets (150-300 mg of active pyridine
methylene azolidinone compound) in a tablet press.
Formulation 5 - Injection
A compound of Formula (I) is dissolved in a buffered sterile saline injectable aqueous
medium to a concentration of approximately 5 mg/mL.

Claims
1. A pyridine methylene azolidinone derivative according to Formula (I),wherein R1 is selected from H, halogen, C1-C6-alkyl, C2-C6-alkenyl and C2-C6-
alkynyl, C]-C6-alkyl alkoxy, alkoxycarbonyl, acyl, sulfonyl, sulfanyl, sulfinyl, alkoxy
and amino;
R2 is selected from H, halogen,-alkyl, C2-C-alkenyl, C2-C6-alkynyl; aryl;
heteroaryl, C3-C8-cycloakyl;g-heterocycloalkyl, aryl d-Ce-alkyl, heteroaryl C1-
C6-alkyl, C3-C8-cycloalkyl C1-C6-alkyl, C3-C8-heterocycloalkyl C1-C6-alkyl, C1C6-
alkyl alkoxy, alkoxycarbonyl, acyl, sulfonyl, sulfanyl, sulfinyl, alkoxy and amino;
X is selected from S, NH and O;
Y is selected from O, S and NR3, wherein R3 is selected from H, optionally
substituted Ci-Ce-alkoxy, optionally substituted C1-C6-alkyl, optionally substituted
C2-C6-alkenyl, optionally substituted C2-C6-alkynyl, optionally substituted C1C6-
alkyl aryl, cyano and optionally substituted sulfonyl;
A is a heteroaryl group;
n is an integer selected from 1 and 2;
as well as its geometrical isomers, its optically active forms as enantiomers,
diastereomers and its racemate forms, as well as pharmaceutically acceptable salts
thereof.
2. A pyridine methylene azolidinone derivative according to claim 1 wherein R1 is H.86
3. A pyridine methylene azolidinone derivative according to claims 1 to 2 wherein R2 is
H.
4. A pyridine methylene azolidinone derivative according to claims 1 to 2 wherein R2 is
C3-C8-heterocycloalkyl.
5. A pyridine methylene azolidinone derivative according to claims 1 to 2 wherein R2 is
selected from aryl and heteroaryl.
6. A pyridine methylene azolidinone derivative according to any of the preceding claims
wherein X is S.
7. A pyridine methylene azolidinone derivative according to any of the preceding claims
wherein Y is O.
8. A pyridine methylene azolidinone derivative according to any of the preceding claims
wherein Y is S.
9. A pyridine methylene azolidinone derivative according to any of the preceding claims
wherein n is 1.
10. A pyridine methylene azolidinone derivative according to any of the preceding claims
wherein A forms together with the pyridine ring the following group (la):
wherein R'and R2are as defined in any of the preceding claims.
! 1. A pyridine methylene azolidinone derivative according to any of claims 1 to 9 wherein A forms together with the pyridine ring the following group (Ib):

wherein R'and R2 are as defined in any of the preceding claims.
12. A pyridine methylene azolidinone derivative according to any of claims 1 to 9 wherein A forms together with the pyridine ring the following group (Ic):

wherein R'and R2are as defined in any of the preceding claims.
13. A pyridine methylene azolidinone derivative according to any of claims 1 to 9 wherein A forms together with the pyridine ring the following group (Id):

wherein R'and R2are as defined in any of the preceding claims.
14. A pyridine methylene azolidinone derivative according to any of claims 1 to 10 wherein R1 is H; R2 is C3-C8-heterocycloalkyl; X is S; Y is O or S and A forms together with the pyridine ring a group of Formula (la).
15. A pyridine methylene azolidinone derivative according to any of the preceding claims
wherein R1 is H; X is S; Y is O and A forms together with the pyridine ring a group
of Formula (Ib).
16. A pyridine methylene azolidinone derivative according to any of the preceding claims
wherein R1 is H; X is S; Y is O and A forms together with the pyridine ring a group
of Formula (Ic).
17. A pyridine methylene azolidinone derivative according to any of the preceding claims
wherein R1 is H; X is S; Y is O and A forms together with the pyridine ring a group
of Formula (Id).
18. A pyridine methylene azolidinone derivative according to any of the preceding
claims, selected from the following group:
(5Z)-5-{[4-(l-piperidinyl)pyrido[3,2-d]pyrimidin-6-yl]methylene}-l,3-thiazolidine-2, 4-dione;
(5Z)-5-{[4-(4-fluoro-l-piperidinyl)pyrido[3,2-d]pyrimidin-6-yl]methylene}-l,3-thiazolidine-2,4-dione;
(5Z)-5-({4-[4-(trifluoromethyl)-l-piperidinyl]pyrido[3,2-d]pyrimidin-6-yl} methylene)-l,3-thiazolidine-2,4-dione; 5-Pyrido[2,3-b]pyrazin-6-ylmethylene-thiazolidine-2,4-dione; 5-Furo[3,2-b]pyridin-5-ylmethylene-thiazolidine-2,4-dione; 5-[4-(4-Fluoro-piperidin-l-yl)-pyrido[3,2-d]pyrimidin-6-ylmethylene]-2-thioxo-thiazolidin-4-one;
5-(3-Phenyl-3H-imidazo[4,5-b]pyridin-5-ylmethylene)-thiazolidine-2,4-dione; 5-[3-(3,5-Dimethoxy-phenyl)-3H-imidazo[4,5-b]pyridin-5-ylmethylene]-thiazolidine-2,4-dione;
5-[5-(2,4-Dioxo-thiazolidin-5-ylidenemethyl)-imidazo[4,5-b]pyridin-3-yl]-2,3-di hydro-indole-1-carboxylic acid tert-butyl ester;
5-[3-(2,3-Dihydro-lH-indol-5-yl)-3H-imidazo[4;5-b]pyridin-5-ylmethylene]-
thiazolidine-2,4-dione;
5-[3-(l-Acetyl-2,3-dihydro-lH-indol-5-yl)-3H-imidazo[4,5-b]pyridin-5-yl
methyIene]-thiazolidine-2,4-dione;
5-{3-[l-(4-Dimethylamino-butyryl)-2,3-dihydro-lH-indol-5-yl]-3H-imidazo[4,5-b]
pyridin-5-ylmethylene}-thiazolidine-2,4-dione;
5-[3-(l-Methanesulfonyl-2,3-dihydro-lH-indol-5-yl)-3H-imidazo[4,5-b]pyridin-5-yl
methylene]-thiazolidine-2,4-dione;
5-[3-(l-Chloromethanesulfonyl-2,3-dihydro-lH-indol-5-yl)-3H-imidazo[4,5-b]
pyridin-5-ylmethylene]-thiazolidine-2,4-dione;
5-{3-[l-(3-Morpholin-4-yl-propane-l-suifonyl)-2,3-dihydro-lH-indol-5-yl]-3H-
imidazo[4,5-b]pyridin-5-ylmethylene}-thiazolidine-2,4-dione;
6-[5-(2,4-Dioxo-thiazolidin-5-ylidenemethyl)-imidazo[4,5-b]pyridin-3-yl]-2,3-
dihydro-indole-1-carboxylic acid tert-butyl ester;
5-[3-(l-Methanesulfonyl-2,3-dihydro-lH-indol-6-yl)-3H-imidazo[4,5-b]pyridin-5-
ylmethylene]-thiazolidine-2,4-dione.
19. A pyridine methylene azolidinone derivative according to claims 1 to 18 for use as a medicament.
A pharmaceutical composition containing at least one pyridine methylene azolidinone derivative according to any of claims 1 to 18 and a pharmaceutieally acceptable carrier, diluent or excipient thereof.
28. A process for the preparation of pyridine methylene azolidinone derivative according to any of claims 1 to 18, comprising the step of reacting a compound of Formula (II) with a derivative of Formula (III) in presence of a base:


Wherein R , R , A, X, Y and n are as defined in any of the preceding claims.
A compound according to Formula (II) ined in any of the preceding claims and wherein the compound of Formula II is selected from the group of formulae (Ila), (lib), (lie) and (lid):

wherein R4 is selected from H and R2; R5 is a R2 group wherein the first atom attached to the pyrimidine ring is selected from C, N, S and O and wherein when R4 is NF^, R5 is not NFk; R1, R2 and n are as defined in any of the preceding claims;

wherein R1, R2 and n are as defined in any of the preceding claims;

wherein R1, R2 and n are as defined in any of the preceding claims and wherein at least one R1 or R2 is not H;

wherein R1, R2 and n are as defined in any of the preceding claims and with the proviso that the compound of Formula (lid) is not 2-(4-methoxyphenyl)-3H-Imidazo[4,5-b]pyridine-5-carboxaldehyde.
A compound according to claim,29^elected from the group:
2-3
4-Piperidin-l-yl-pyrido[3,2-d]pyrimidine-6-carbaldehyde;
4-(4-Fluoro-piperidin-l-yl)-pyrido[3,2-d]pyrimidine-6-carbaldehyde;
4-(4-Methyl-piperidin-l-yl)-pyrido[3,2-d]pyrimidine-6-carbaldehyde;
Pyrido[2,3-b]pyrazine-6-carbaldehyde;
2-Trimethylsilanyl-furo[3,2-b]pyridine-5-carbaldehyde;
3-Phenyl-lH-imidazo[4,5-b]pyridine-5-carbaldehyde;
3-(3,5-Dimethoxyphenyl)-3JLf-imidazo[4,5-i]pyridine-5-carbaldehyde;
Terf-butyl 5-(5-formyl-3H-imidazo[4,5-6]pyridin-3-yl)indoline-l-carboxylate;
3-(l-acetyl-2,3-dihydro-lH-indol-5-yl)-3H-imidazo[4,5-6]pyridine-5-carbaldehyde;
3-{l-[4-(dimethylamino)butanoyl]-2,3-dihydro-1H-indol-5-yl}-3H-imidazo[4,5-6]
pyridine-5-carbaldehyde;
3-[l-(methylsulfonyl)-2,3-dihydro-lH-indol-5-yl]-3-imidazo[4,5-]pyridine-5-
carbaldehyde;
3-{l-[(chloromethyl)sulfonyl]-2,3-dihydro-lH-indol-5-yl}-3^-imidazo[4,5-Z)]
pyridine-5-carbaldehyde;
3-{l-[(3-morpholin-4-ylpropyl)sulfonyl]-2,3-dihydro-lH'-indol-5-yl}-3H-
imidazo[4,5-6]pyridine-5-carbaldehyde;
Terr-butyl 6-(5-formyl-3H-imidazo[4,5-6]pyridin-3-yl)indoline-l-carboxylate; and
3-[l-(methylsulfonyl)-2,3-dihydro-lH-indol-6-yl]-3-imidazo[4,5-b]pyndine-5-
carbaldehyde.




Documents:

1299-delnp-2007-Abstract (21-11-2012).pdf

1299-delnp-2007-abstract.pdf

1299-delnp-2007-Assignment (22-06-2008).pdf

1299-delnp-2007-Claims (21-11-2012).pdf

1299-delnp-2007-claims.pdf

1299-delnp-2007-Correspondence-others (21-11-2012).pdf

1299-delnp-2007-Correspondence-others (24-06-2008).pdf

1299-DELNP-2007-Correspondence-Others.pdf

1299-delnp-2007-description (complete).pdf

1299-delnp-2007-description(complete).pdf

1299-delnp-2007-Form-1 (22-06-2008).pdf

1299-DELNP-2007-Form-1.pdf

1299-delnp-2007-Form-18 (24-06-2008).pdf

1299-delnp-2007-Form-2 (21-11-2012).pdf

1299-delnp-2007-form-2.pdf

1299-delnp-2007-Form-3 (21-11-2012).pdf

1299-delnp-2007-form-3.pdf

1299-delnp-2007-Form-5 (21-11-2012).pdf

1299-delnp-2007-form-5.pdf

1299-delnp-2007-Form-6 (22-06-2008).pdf

1299-delnp-2007-GPA (21-11-2012).pdf

1299-delnp-2007-GPA (22-06-2008).pdf

1299-delnp-2007-gpa.pdf

1299-delnp-2007-pct-237.pdf

1299-delnp-2007-pct-304.pdf

1299-delnp-2007-pct-306.pdf

1299-delnp-2007-Petition-137 (21-11-2012).pdf


Patent Number 257804
Indian Patent Application Number 1299/DELNP/2007
PG Journal Number 45/2013
Publication Date 08-Nov-2013
Grant Date 06-Nov-2013
Date of Filing 19-Feb-2007
Name of Patentee LABORATOIRES SERONO SA
Applicant Address CENTRE INDUSTRIEL, 1267 COINSINS, VAUD, SWITZERLAND
Inventors:
# Inventor's Name Inventor's Address
1 ALEXANDER BISCHOFF 168 AVALON CIRCLE SMITHTOWN, NY 11797, U.S.A.
2 THOMAS RUECKLE 4 RUE DAUBIN, 1203 GENEVA, SWITZERLAND
3 ANNA QUATTROPANI 2 ROUTE DE CHENE, 1207 GENEVA, SWITZERLAND
4 VINCENT POMEL 228 CHEMIN DU BOIS DES PRESSES, 74570 GROISY, FRANCE
5 JEROME DORBAIS 5 RUE BURGAT-CHARVILLON, 74000 ANNECY, FRANCE
6 DAVID COVINI 21 CHEMIN DE 1'EPINE, 74160 NEYDENS, FRANCE
PCT International Classification Number C07D 471/04
PCT International Application Number PCT/EP2005/054339
PCT International Filing date 2005-09-02
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/607,374 2004-09-03 EUROPEAN UNION
2 04104259.0 2004-09-03 EUROPEAN UNION