Title of Invention

"IMMUNOGENIC PEPTIDE CARRIER CONJUGATES AND COMPOSITION COMPRISING THE SAME"

Abstract An immunogenic conjugate comprising a peptide immunogen covalently attached to a carrier protein, wherein the immunogenic conjugate has the formula: wherein, C is a carrier protein selected from the group consisting of CRM197, Streptococcus pyogenes ORF1224, Streptococcus pyogenes ORF1664, Streptococcus pyogenes ORF2452, and Chlamydia pneumoniae ORF T858, Xd is a derivatized functional group of an amino acid residue of the carrier protein. P is a peptide immunogen comprising an Aß fragment covalently attached to the derivatized functional group of the amino acid residue of the carrier protein R is a capping molecule covalently attached to the derivatized functional group of an amino acid residue of the carrier protein, whereby the functionality of the carrier protein is preserved, such that it retains its ability to elicit the desired immune responses against the peptide immunogen that would otherwise not occur without a carrier, n is an integer greater than 0, but less than or equal to 38, and p is an integer greater than 0, but less than or equal to 38.
Full Text Aß IMMUNOGENIC PEPUDE CARRIER CONJUGATES
AND METHODS OF PRODUCING SAME
CROSS-REFERENCES TO RELATED APPLICATIONS
[0001] This application claims the benefit under 35 U.S.C. § 119(e) of U.S. Provisional
Patent Application Serial No. 60/530,481, filed December 17,2003, which is incorporated
herein by reference in its entirety for all purposes
BACKGROUND OF THE INVENTION
[0002] The essence of adaptive immunity is the ability of an organism to react to the
presence of foreign substances and produce components (antibodies and cells) capable of
specifically interacting with and protecting the host from their invasion. An "antigen" or
"immunogen" is a substance that is able to elicit this type of immune response and also is.
capable of interacting with the sensitized cells and antibodies that are manufactured against it.
[0003] Antigens or immunogens are usually macromolecules that contain distinct antigenic
sites or "epitopes" that are recognized and interact with the various components of the
immune system. They can exist as individual molecules composed of synthetic organic
chemicals, proteins, lipoproteins, glycoproteins, RNA, DNA, or polysaccharides, or they may
be parts of cellular structures (bacteria or fungi) or viruses (Harlow and Lane 1988a,b, c;
Maleefa/ 1987).
[0004] Small molecules like short peptides, although normally able to interact with the
products of an immune response, often cannot cause a response on their own. These peptide
immunogens or "haptens" as they are also called, are actually incomplete antigens, and,
although not able by themselves to cause immunogenicity or to elicit antibody production,
can be made immunogenic by coupling them to a suitable carrier. Carriers typically are
protein antigens of higher molecular weight that are able to cause an immunological response
when administered in vivo.
[0005] In an immune response, antibodies are produced and secreted by the B-lymphocytes
in conjunction with the T-helper (TH) cells, hi the majority of hapten-carrier systems, the B
cells produce antibodies that are specific for both the hapten and the carrier, hi these cases,
the T lymphocytes will have specific binding domains on the carrier, but will not recognize
the hapten alone, hi a kind of synergism, the B and T cells cooperate to induce a hapten-
specific antibody response. After such an immune response has taken place, if the host is
subsequently challenged with only the hapten, usually it will respond by producing haptenspecific
antibodies from memory cells formed after the initial immunization.
[0006] Synthetic haptens mimicking some critical epitopic structures on larger
m a c r o m o l e c u l t i o n a l , heterobifunes a r e o f t e n c o n j u g a t e d t o c a r r i e r s t o c linking/coupling reagents such as homobifuncctional, or zero-length cross
linkers. Many such methods are currently available for coupling of saccharides, proteins, and
peptides to peptide carriers. Most methods create amine, amide, urethane, isothiourea, or
disulfide bonds, or in some cases thioethers. A disadvantage to the use of coupling reagents,
which introduce reactive sites in to the side chains of reactive amino acid molecules on
carrier and/or hapten molecules, is that the reactive sites if not neutralized are free to react
with any unwanted molecule either in vitro (thus adversely affecting the functionality or
stability of the conjugate(s)) or in vivo (thus posing a potential risk of adverse events in
persons or animals immunized with the preparations). Such excess reactive sites can be
reacted or "capped", so as to inactivate these sites, utilizing various known chemical
reactions, but these reactions may be otherwise disruptive to the functionality of the
conjugates. This may be particularly problematic when attempting to create a conjugate by
introducing the reactive sites into the carrier molecule, as its larger size and more complex
structure (relative to the hapten) may render it more vulnerable to the disruptive effects of
chemical treatment. In fact, no examples are known of methods whereby a conjugate is made
by first activating the carrier, then reacting with the hapten in a conjugation reaction, and
finally capping the remaining reactive sites, while preserving the ability of the resulting
conjugate to function as an immunogenic composition having the desired properties of the
carrier effect.
BRIEF SUMMARY OF THE INVENTION
[0009] The present invention is directed to methods of producing an immunogenic
conjugate of a peptide immunogen comprising A/3 peptide or fragments of A/3 or analogs
thereof with a protein/polypeptide carrier, wherein the A|3 peptide or fragments of A/3 or
analogs thereof is conjugated to the carrier via derivatized functional groups of amino acid
residues of the carrier such as lysine residues, and wherein any unconjugated, derivatized
functional groups of the amino acid residues are inactivated via capping to block them from
reacting with other molecules, including proteins/polypeptides thereby preserving the
functionality of the carrier, such that it retains its ability to elicit the desired immune
responses against the peptide immunogen that would otherwise not occur without a carrier.
Furthermore, the invention also relates to conjugates produced by the above methods, and to
immunogenic compositions containing such conjugates.
[0010] In one embodiment, the invention is directed to a first method for conjugating a
peptide immunogen comprising A/3 peptide or fragments of Aß or analogs thereof via a
reactive group of an amino acid residue of the peptide immunogen to a protein/polypeptide
carrier having one or more functional groups, the method comprising the steps of: (a)
derivatizing one or more of the functional groups of the protein/polypeptide carrier to
generate a derivatized molecule with reactive sites; (b) reacting the derivatized
protein/polypeptide carrier of step (a) with a reactive group of an amino acid residue of the
peptide immunogen under reaction conditions such that the peptide inununogen is conjugated
to the derivatized protein/polypeptide carrier via the functional groups; and (c) further
reacting the conjugate with a capping reagent to inactivate free, reactive functional groups on
the activated protein/polypeptide carrier, thereby preserving the functionality of the carrier
such that itretains its abilityto elicit the desired immune responses against the peptide
immunogen that would otherwise not occur without a carrier.
[0011] In one embodiment, the protein/polypeptide carrier is selected from the group
consisting of human serum albumin, keyhole limpet hemocyanin, immunoglobulin
molecules, thyroglobulin, ovalbumin, influenza hemagglutinin, PAN-DR binding peptide
(PADRE polypeptide), malaria circumsporozite (CS) protein, hepatitis B surface antigen
(HBsAg19-28g),Heat Shock Protein (HSP) 65, Bacillus Calmette-Guerin (BCG), cholera toxin,
cholera toxin mutants with reduced toxicity, diphtheria toxin, CRMm protein that is crossreactive
with diphtheria toxin, recombinant Streptococcal C5a peptidase, Streptococcus
pyogenes ORF1224, Streptococcuspyogenes ORF1664, Streptococcuspyogenes ORF 2452,
Streptococcus pneumoniae pneumolysin, pneumolysin mutants with reduced toxicity,
Chlamydiapnewnoniae ORF T367, Chlamydiapneumoniae ORF T858, Tetanus toxoid, HIV
gp!20 Tl, microbial surface components recognizing adhesive matrix molecules
(MSCRAMMS), growth factor / hormone, cytokines and chemokines.
[0012] hi another embodiment, the protein/polypeptide carrier contains a T-cell epitope.
[0013] hi yet another embodiment, the protein/polypeptide carrier is a bacterial toxoid such
as a tetanus toxoid, cholera toxin or cholera toxin mutant as described above. In a preferred
embodiment, t h e protein/polypeptide carrier i s C R M 1 9 7 [ 0 0 1 4 ] In still y e t another embodiment, hemagglutinin, a PADRE polypeptide, a malaria CS protein, a Hepatitis B surface antigen
(HSBAgi9-28), a heat shock protein 65 (HSP 65), or a polypeptide from Mycobacterium
tuberculosis (BCG).
[0015] hi a preferred embodiment, the protein/polypeptide carrier is selected from
Streptococcal rC5 a peptidase, Streptococcus pyogenes ORF 1224, Streptococcus pyogenes
ORF1664 or Streptococcus pyogenes ORF2452, Sfreptococcus pneumoniae pneumolysin,
pneumolysin mutants with reduced toxicity, Chlamydia pneumoniae ORF T367, and
Chlamydia pneumoniae ORF T858.
[0016] In one embodiment, protein/polypeptide carrier is a growth factor or hormone,which stimulates or enhances immune response and is selected from the group consisting of
IL-1, IL-2, -y-mterferon, IL-10, GM-CSF, MDP-lo, MIP-ljS, andRANTES.
[0017] In one aspect, the invention provides a peptide immunogen comprising A|3 peptide
or fragments of Ap or analogs thereof eliciting an immunogenic response against certain
epitopes within Ap. Immunogenic peptides of the invention include immunogenic
heterologous peptides. In some immunogenic peptides, an AP fragment is linked to a carrier
to form an immunogenic heterologous peptide, and then this heterologous peptide is linked to
a carrier using a method of the present invention to form a conjugate.
[0018] In another aspect of the invention, the peptide immunogen is a polypeptide
comprising an N-terminal segment of at least residues 1-5 of Ap, the first residue of Ap being
the N-terminal residue of the polypeptide, wherein the polypeptide is free of a C-terminal
segment of Ap. Li yet another aspect of the invention, the peptide immunogen is a
polypeptide comprising an N-terminal segment of Ap, the segment beginning at residue 1-3
of Ap and ending at residues 7-11 of Ap. In some aspects of the invention, the peptide
immunogen is an agent that induces an immunogenic response against an N-terminal segment
of Ap, the segment beginning at residue 1-3 of Ap and ending at residues 7-11 of Ap without
inducing an immunogenic response against an epitope within residues 12-43 of Ap43. In
another aspect of the invention, the peptide immunogen is a heterologous polypeptide
comprising a segment of A/3 linked to a heterologous amino acid sequence that induces a
helper T-cell response against the heterologous amino acid sequence and thereby a B-cell
response against the N-terminal segment.
[0019] In some peptide immunogens, the N-terminal segment of Ap is linked at its Cterminus
to a heterologous polypeptide. In some peptide immunogens, the N-terminal
segment of Ap is linked at its N-terminus to a heterologous polypeptide. In some peptide
immunogens, the N-terminal segment of Ap is linked at its N and C termini to first and
second heterologous polypeptides. In some peptide immunogens, the N-terminal segment of
Ap is linked at its N terminus to a heterologous polypeptide, and at its C-terminus to at least
one additional copy of the N-terminal segment. In some peptide immunogens, the
polypeptide comprises from N-terminus to C-terminus, the N-terminal segment of Ap, a
plurality of additional copies of the N-terminal segment, and the heterologous amino acid
segment.
[0020] In some of the above peptide immunogens, the polypeptide further comprises at
least one additional copy of the N-terminal segment. In some of the above peptide
immunogens, the fragment is free of at least the 5 C-terminal amino acids in AJ343.
[0021] In some aspects of the above peptide immunogens, the fragment comprises up to 10
contiguous amino acids from A(3.
[0022] m another aspect, the invention provides a peptide immunogen comprising Aj8
peptide or fragments of Ap or analogs thereof eliciting an immunogenic response against
certain epitopes within AP may be in a configuration referred to as a multiple antigenic
peptide (MAP) configuration.
[0023] In some of the above aspects of the invention, the peptide immunogen from the Nterminal
half of A. In some aspects of the invention, the peptide immunogen is an A/3
fragment selected from the group consisting of A01-3,1-4,1-5,1-6,1-7, 1-10,1-11,1-12,1-
16, 3-6, and.3-7. La some of the above aspects of the invention, the peptide immunogen is
from the internal region ofIn some aspects of the invention, the peptide immunogen is
an A/3 fragment selected from the group consisting of A/313-28,15-24, 17-28, and 25-35. In
some of the above aspects of the invention, the peptide immunogen from the C-terminal end
of A/3. Li some aspects of the invention, the peptide immunogen is an A/3 fragment selected
from the group consisting of A/333-42, 35-40, and 35-42. In some aspects of the invention,
the peptide immunogen is an A fragment selected from the group consisting of A/31-3, 1-4,
1-5, 1-6, 1-7,1-10,1-11, 1-12, 1-16, 1-28, 3-6, 3-7, 13-28, 15-24, 17-28, 25-35,33-42, 35-40,
and 35-42. hi some aspects of the invention, the peptide immunogen is an A/3 fragmentselected from the group consisting of A - 5 , A/31-7, A/31-9, and A/31-12. In some aspects of
the invention, the peptide immunogen is an A^ fragment selected from the group consisting
of A1-5-L, A/J1-7-L, A1-9-L, and A/31-12-L, where L is a linker. In some aspects of the
invention, the peptide immunogen is an A^ fragment selected from the group consisting of
A/31-5-L-C, A/31-7-L-C, Aj31-9-L-C, and A/31-12-L-C, where C is a cysteine amino acid
residue.
[0024] hi some aspects of the invention, the peptide immunogen is an' A/3 fragment selected
from the group consisting of A016-22, A|316-23, Aj317-23, A)317-24, A018-24, and A018-25.
In some aspects of the invention, the peptide immunogen is an A8 fragment selected from the
group consisting of Aj916-22-C, A6-23-C, A/317-23-C, Aj317-24-C, A018-24-C, and A/318-
25-C, where C is a cysteine amino acid residue. In other aspects of the invention, the peptide
imnrunogen is an Aft fragment selected from the group consisting of C-Aj316-22, C-Aj316-23,
C-Aß17-23, C-A017-24, C-A/318-24, and C-A/J18-25, where C is a cysteine amino acid
residue.
[0025] In some of the above peptide immunogens, the heterologous polypeptide is selected
from the group consisting of peptides having a T-cell epitope, a B-cell epitope and
combinations thereof.
[0026] In one embodiment, the functional group of one or more amino acid molecules of
the protein/polypeptide carrier or of the optionally attached polypeptide linker is derivatized
using a cross-linking reagent. In another embodiment, the derivatizing reagent is a zerolength
cross-linking reagent. In another embodiment, the derivatizing reagent is a
homobifunctional cross-linking reagent. In yet another embodiment, the derivatizing reagent
is a heterobifunctional cross-Unking reagent.
[0027] In a preferred embodiment, the heterobifunctional reagent is a reagent that reacts
with a primary or a e-amine functional group of one or more amino acid molecules of the
protein/polypeptide carrier and a pendant thiol group of one or more amino acid molecules of
the peptide immunogen. In one embodiment, the heterobifunctional reagent is N-succinimidyl
bromoacetate.
[0028] In another embodiment, the primary or e-amine functional group is lysine. In yet
another embodiment, the derivatization of the primary or e-amine functional group of the
lysine of the protein/polypeptide carrier with N-succinimidyl bromoacetate results in the
bromoacetylation of the primary or e-amine residues on lysine molecules on the
protein/polypeptide carrier. In a more preferred embodiment, the pendant thiol group is a
cysteine residue of the peptide immunogen, which may be localized at the ammo-terminus of
the peptide immunogen, at the carboxy-terminus of the peptide immunogen or internally hi
the peptide immunogen.
[0029] In another embodiment, the pendant thiol group is generated by a thiolating reagent
such as N-acetyl homocysteinethio lactone, Traut's reagent (2-iminothilane) SATA (NSuccmimidyl
S-acetylthioacetate), SMPT (4-Succmimidyloxycarbonyl-methyl2-pyridyldithio
toluene), Sulfo LC SPDP (Sulfo Succinimidyl pyridyl dithio propionamido hexanoate), SPDP
(Succinimidyl pyridyl dithio propionate). In a preferred embodiment, the capping reagent
that is used to inactivate free reactive, functional groups on the activated protein/polypeptide
carrier is selected from the reagent group consisting of cysteamine,N-acetylcysteamine, and
ethanolamine.
[0030] In a particularly preferred embodiment, the capping reagent that is used to inactivate
free reactive functional groups on the activated protein/polypeptide carrier is selected from
the reagent group consisting of sodium hydroxide, sodium carbonate, ammonium bicarbonate
and ammonia.
[0031] In one embodiment, the reactive group of the amino acid residue of the peptide
immunogen is a free sulfhydryl group.
[0032] hi another embodiment, one or more of the functional groups are on a linker, which
is optionally attached to the protein/polypeptide carrier. In a preferred embodiment, thelinker is a peptide linker, hi a more preferred embodiment, the peptide linker is polylysine.
[0033] hi another embodiment, the invention is directed to a second method for conjugating
a peptide immunogen comprising A/3 peptide or fragments of Aj8 or analogs thereof A/3 or
analogs thereof with a protein/polypeptide carrier having the structure:
wherein,
[0034] C is a protein/polypeptide carrier and X is a derivatizable functional group of an
amino acid residue on the protein/polypeptide carrier or optionally of an amino acid residue
of a peptide linker covalentiy attached to the protein/polypeptide carrier, and wherein m is an
integer greater than 0, but less than or equal to 85, the method comprising the steps of:
(a) derivatizing one or more of the functional groups of the protein/polypeptide carrier or of
the optionally attached linker molecule to generate a derivatized molecule with reactive sites;
(b) reacting the derivatized protein/polypeptide carrier of step (a) with a reactive group of an
amino acid residue of the peptide immunogen to form a covalently coupled peptide
inrmunogen-protein/polypeptide carrier conjugate; and (c) further reacting the said conjugate
with a capping reagent to inactive the free reactive functional groups on the activated
protein/polypeptide carrier, such that the capped groups are not free to react with other
molecules, including proteins/polypeptides thereby preserving the functionality of the carrier,
such that it retains its ability to elicit the desired immune responses against the peptide
immunogen that would otherwise not occur without a carrier so as to generate a capped
peptide immunogen-protein/polypeptide carrier conjugate having the formula:
wherein,
[0035] C is the protein/polypeptide carrier and Xd is a derivatized functional group of an
amino acid residue of the protein/polypeptide carrier or optionally of an amiao acid residue of
a peptide linker covalently attached to the protein/polypeptide carrier, and, wherein,
[0036] P is the peptide immunogen molecule covalently attached to the derivatized
functional group on the amino acid residue on the protein carrier or optionally on an amino
acid residue on a peptide linker covalently attached to a protein/polypeptide carrier, R is a
capping molecule covalently attached to the derivatized functional group on an amino acid
residue on the protein/polypeptide carrier or optionally on an amino acid residue on a peptide
linker covalently attached to a protein/polypeptide carrier, n is an integer greater than 0, but
less than or equal to 85, and p is an integer greater than 0, but less than 85.
[0037] The detailed embodiments for the first method described above are also applicable
to the conjugates just described prepared by the second method.
[0038] In one embodiment, the invention is directed to peptide immunogen-comprising Aj8
peptide or fragments fo Aj3 or analogs thereofipolypeptide carrier conjugates wherein the
protein/polypeptide carrier has the formula:
wherein,
[0039] C is a protein/polypeptide carrier and X is a derivatizable functional group of an
amino acid residue on the protein/polypeptide carrier or optionally of an amino acid residue
of a peptide linker covalently attached to the protein/polypeptide carrier, and, wherein, m is
an. integer greater than 0, but less than or equal to 85, and wherein the capped peptide
immunogen-protein/polypeptide carrier conjugate has the formula:
(Table Removed)
[0040] C is the protein/polypeptide carrier and Xdis a derivatized functional group of an
amino acid residue of the protein/polypeptide carrier or optionally of an amino acid residue of
a peptide linker covalently attached to the protein/polypeptide carrier, and, wherein, P is the
peptide immunogen molecule covalently attached to the derivatized functional group of the
amino acid residue of the protein carrier or optionally of an amino acid residue of a peptide
linker covalently attached to a protein/polypeptide carrier, R is a capping molecule covalently
attached to the derivatized functional group of an amino acid residue of the
protein/polypeptide carrier or optionally of an amino acid residue of a peptide linker
covalently attached to a protein/polypeptide carrier, thereby preserving the functionality of
the carrier, such that it retains its ability to elicit the desired immune responses against the
peptide immunogen that would otherwise not occur without a carrier., n is an integer greater
than 0, but less than or equal to 85, and p is an integer greater than 0, but less than 85.
[0041] The detailed embodiments for the first and second methods described above are also
applicable to the conjugates just described.
[0042] m another embodiment, the invention is directed to peptide immunogen- comprising
A peptide or fragments of A/3 or analogs thereof/polypsptide carrier conjugates generated
according to the second method of the invention and having the formula:
[0043] C is the protein/polypeptide carrier and Xd is a derivatized functional group of an
amino acid residue of the protein/polypeptide carrier or optionally of an amino acid residue of
a peptide linker covalently attached to the protein/polypeptide carrier, and, wherein, P is the
peptide immunogen molecule covalently attached to the derivatized functional group of the
amino acid residue of the protein carrier or optionally of an amino acid residue of a peptide
linker covalently attached to a protein/polypeptide carrier, R is a capping molecule covalently
attached to the derivatized functional group of an amino acid residue of the
protein/polypeptide carrier or optionally of an amino acid residue of a peptide linker
covalently attached to a protein/polypeptide carrier thereby preserving the functionality of the
carrier, such that it retains its ability to elicit the desired immune responses against the
peptide immunogen that would otherwise not occur without a carrier., n is an integer greater
than 0, but less than or equal to 85, and p is an integer greater than 0, but less than 85.
[0044] The detailed embodiments for the second method described above are also
applicable to the conjugates generated by the second method, as just described.
[0045] In another embodiment, the invention is directed to immunogenic compositions
comprising a conjugate of a peptide immunogen with a protein/polypeptide carrier generated
by the second method of the invention, together with one or more pharmaceutically
acceptable excipients, diluents, and adjuvants.
[0046] The detailed embodiments for the second method and the conjugates generated
thereby described above are also applicable to immunogenic compositions containing those
conjugates as just described.
[0047] In another embodiment, the invention is directed to a method for inducing an
immune response in a mammalian subject, which comprises administering an effective
amount of an immunogenic composition of the present invention to the subject.
[0048] The detailed embodiments applicable to the immunogenic composition containing
the conjugates of the present invention are also applicable to the embodiment of the invention
directed to the method of use of these immunogenic compositions.
BRIEF DESCRIPTION OF THE DRAWINGS
[0049] Figure 1: Flow chart depicting the process chemistry used for conjugation of A(3
peptide fragments to protein/polypeptide carrier CRMjg? to form the A/3 / CRMig? conjugate.
[0050] Figure 2: Flow chart depicting acid hydrolysis chemistry used for quantitative
determination of S-carboxymethylcysteine and S-carboxymethylcysteamine as evaluation of
the degree of conjugation of peptide immunogen-protein/polypeptide conjugates such as the
Ap/CRMi97 conjugate.
[0051] Figure 3: This figure depicts the pH dependence of the Ap peptide/CRM
conjugation reaction.
[0052] Figure 4: This figure depicts the dependence of A/?-peptide/CRM conjugation on
peptide: CRM ratio.
[0053] Figure 5: Verification of capping process for Afil-7/CRM conjugation. The pH
of the reaction was 9.15. Reactiontime with peptide was 16 hrs, capping with Nacetylcysteamine
was 8 hrs.
[0054] .Figure 6: Conjugation and capping with various peptide: CRM ratios with
peptide. The pH of the reaction was 9.0. Reaction time with peptide was 16 hrs, capping
with AT-acetylcysteamine was 8 hrs.
[0055] Figure 7: Day 36 titers of primate sera following immunization of primates with
A|8 peptide conjugates with various adjuvants.
[0056] Figure 8: Day 64 titers of primate sera following immunization of primates with
Aj3-peptide conjugates with various adjuvants.
[0057] Figure 9: Primate titers by day and treatment group. Primates were immunized
with A/31-7 or A/3 1-5 CRMjg? conjugates with alum or RC529 as adjuvants and titers of
anti-A|3 antibodies were measured at day 29,36, 57 and 54.
[0058] Figure 10: Peptide-protein conjugates were characterized using SDS-PAGE
Western blot analysis with a tris-tricine precast gel. The lanes are: marker (lane 1); L-28375
24/01 (lane 2); L-28375 24/02 (lane 3); L-28375 24/03 (lane 4); L-28375 24/04 (lane 5); L-
28375 24/05 (lane 6); L-28375 24/06 (lane 7) L-28375 24/07 (lane 8); L-28375 24/08 (lane
9); L-28375 24/09 (Mock) (lane 10); and, BrAcCRM (lane 11).
BRIEF DESCRIPTION OF SEQUENCES
(Table Removed)

Sequence
DAEFRHDSGYEV-C
DAEFR-GAGA-C
DAEFRHD-GAGA-C
DAEFRHDSG-GAGA-C
DAEFRHDSGYEV-GAGA-C
VEYGSDHRFEAD-C
GAGA
PKYVKQNTLKLAT
AKXVAAWTLKAAA
EKKIAKMEKASSVFNV
FELLTRILTI
DQSIGDLIAEAMDKVGNEG
QVHFQPLPPAWKL
QYIKANSKFIGITEL
FNNFTVSFWLRVPKVSASHLE
KQHNMWQEVGKAMY
DAEFRHD-QYIKANSKFIGITEL-CFNNFTVSFWLRVPKVSASHLEDAEFRHD
DAEFRHDSGYEVHHQKLVFFAEDVGSN
KGAHGLMVGGWIA
DAEFRHDQYIKANSKFIGITEL
DAEFRHDFNNFTVSFWLRVPKVSASHLE
DAEFRHDQYIKANSKFIGITELFNNFTVSFWLRVPK
VSASHLE
EFRHDSG-QYIKANSKFIGITEL
Description
A-12-C
A-5-L-C
A1-7-L-C
A1-9-L-C
A1-12-L-C
A12-1-C
Linker peptide
Influenza Hemagglutinin: HA307-319
PAN-DR Peptide (PADRE peptide)
Malaria CS: T3 epitope
Hepatitis B surface antigen:
HBsAgig.zs
Heat Shock Protein 65: hsp65i53_i7i
Bacillus Calmette-Guerin (BCG)
Tetanus toxoid: TTs3o-844
Tetanus toxoid: TT947-967
HTVgpl20Tl
Apl.7/TT830.844/C/TT947-967/Api.7
APL42
AN90549: Api.7/TT83o.g44
(used in a MAP4 configuration)
AN90550: Api.7/TT947.967
(used in a MAP4 configuration)
AN90542: Ap,.7/TTg3o-844 + TT947-
967
(used in a linear configuration)
AN90576: Ap3VTr830.844
(used in a MAP4 configuration)
(Table Removed)

Sequence
AKXVAAWTLKAAA-DAEFRHD
DAEFRHD-DAEFRHDDAEFRHDAKXVAAWTLKAAA
AKXVAAWTLKAAA-DAEFRHDDAEFRHD-
DAEFRHD
DAEFRHD-AKXVAAWTLKAAA
DAEFRHD-ISQAVHAAHAEINEAGR
FRHDSGY-ISQAVHAAHAEINEAGR
EFRHDSG-ISQAVHAAHAEINEAGR
PKYVKQNTLKLAT-DAEFRHDDAEFRHD-
DAEFRHD
DAEFRHD-PKYVKQNTLKLATDAEFRHD
DAEFRHD-DAEFRHD-DAEFRHDPKYVKQNTLKLAT
DAEFRHD-DAEFRHDPKYVKQNTLKLAT
DAEFRHD-PKYVKQNTLKLATEKKIAKMEKASSVFNVQYIKANSKFIGITELFNNFTVSFWLRVPKVSASHLEDAEFRHD
DAEFRHD-DAEFRHD-DAEFRHDQYJKANSKFIGITEL-
CFNNFTVSFWLRVPKVSASHLE
DAEFRHD-QYIKANSKFIGITEL-CFNNFTVSFWLRVPKVSASHLE
GADDWDSSKSFVMENFSSYHGTKPGY
VDSIQKGIQKPKSGTQGNYDDDWKEFY
STDMCYDAAGYSVDNENPLSGKAGGW
KVTYPGLTKVLALKVDNAETIKKELGLS
LTEPLMEQVGTEEFIKRFGDGASRWLS
LPFAEGSSSVEYINNWEQAKALSVELEIN
FETRGKRGQDAMYEYMAQACAGNRVR
RSVGSSLSCINLDWDVIRDKTKTKIESLK
EHGPIKNKMSESPNKTVSEEKAKQYLEE
Description
AN90562: Api.7/PADRE
AN90543: Api-7 x 3/PADRE
PADRE/Ap x 3
3/PADRE
umin fragment
Ao/ albumin fragment
ApsV albumin fragment
HA307-319/Apl-7 X 3
Api.7/HA3o7.3i9/Api.7
APJ-7X3/HA307-319
APL7X2/HA3Q7-319
Api-7/HA3o7-3i9/Malaria CS/
TT830-844/TT947.967/Api.7
API-7 X 3ATT830.844/C/TT947.967
Api-7/TT830-844/C/TT947-967
CRMpi97
(Table Removed)

Sequence
FHQTALEHPELSELKTVTGTNPWAGAN
YAAWAVNVAQVIDSETADNLEKTTAAL
SILPGIGSVMGIADGAVBHNTEEIVAQSI
ALSSLMVAQAIPLVGELVDIGFAAYNFV
ESITNLFQWHNSYNRPAYSPGHKTQPFL
HDGYAVSWNTVEDSIIRTGFQGESGHDI
KJTAENTPLPIAGVLLPTIPGKLDVNKSK
TmSYNGRKIRMRCRABDGDVTFCRPKSP
VYVGNGVHANLHVAFHRSSSEIGHSNEI
SSDSIGVLGYQKTVDHTKVNSKLSLFFEI
KS
ISQAYHAAHAEINEAGR
DAEFGHDSGFEVRHQKLVFFAEDVGSNKG
AIIGLMVGGWIA
VFFAEDVG-C
LVFFAEDV-C
KLVFFAED-C
C-VFFAEDVG
C-LVFFAEDV
C-KLVFFAED
VFFAEDV-C
LVFFAED-C
KLVFFAE-C
C-VFFAEDV
C-LWFAED
C-KLVFFAE
Description
Albumin fragment
Murine A(1-42
A(18-25 -C
A(17-24 -C
A(16-23 -C
C-A(18-25
C-A(17-24
C-A(16-23
A(18-24-C
A(17-23 -C
A(16-22 -C
C-Apig,24
C-Apn-23
C-Ap16.22
DETAILED DESCRIPTION OF THE INVENTION
[0059] The present invention is directed to methods of generating peptide immunogencarrier
conjugates wherein the unreacted active functional groups on the carrier which are
generated during activation are inactivated by using capping reagents such as A^
Acetylcysteamine in order to prevent them from reacting further. The present invention is
also directed to capped carrie e.comr-peptide immunogen conjugates generated by those methods
and to immunogenic compositions comprising said conjugates.
[0060] The approach of increasing immunogenicity of small or poorly immunogenic
molecules, such as saccharides, through conjugation has been utilized successfully for
decades (see, e.g., Goebel et al. (1939) J. Exp. Med. 69: 53), and many immunogenic
compositions have been described in which purified capsular polymers have been conjugated
to carrier proteins to create more effective immunogenic compositions by exploiting this
"carrier effect". For example, Schneerson et al. (J. Exp. Med. 152: 361-376,1980), describe
Haemophilus influenzae b polysaccharide protein conjugates that confer immunity to invasive
diseases caused by that microorganism. Conjugates of PRP (polyribosylribitol phosphate, a
capsular polymer of H. influenzae b) have been shown to be more effective than
immunogenic compositions based on the polysaccharide alone (Chu et al, (1983) Infect.
Immun. 40:245; Schneerson et al. (1984), Infect. Immun. 45: 582-591). Conjugation has also
been shown to bypass the poor antibody response usually observed in infants when
immunized with a free polysaccharide (Anderson et al. (1985) J. Pediatr. 107: 346; rnsel et
al. (1986) .7. Exp. Med. 158: 294).
[0061] A further advantage of using as the protein carrier a bacterial toxin or toxoid against
which routine immunization of humans (e.g., tetanus or diphtheria) is a standard practice is
that a desired immunity to the toxin or toxoid is induced along with immunity against the
pathogens associated with the capsular polymer.
[0062] Antigenic determinant/hapten-carrier conjugates also are being used to produce
highly specific monoclonal antibodies that can recognize discrete chemical epitopes on the
coupled hapten. The resulting monoclonals often are used to investigate the epitopic
structure and interactions between native proteins. In many cases, the antigenic
detenninants/haptens used to generate these monoclonals are small peptide segments
representing crucial antigenic sites on the surface of larger proteins. The criteria for a
successful carrier to be used in generating an antigenic determinant/hapten-carrier conjugate
are the potential for immunogenicity, the presence of suitable functional groups for
conjugation with an antigenic determinant/hapten, reasonable solubility properties even after
derivatization and lack of toxicity in vivo.
[0063] These criteria are met by the conjugates generated by the methods of the instant
invention. The conjugates may be any stable peptide immunogen-carrier conjugates
generated using the conjugation process described herein. The conjugates are generated using
a process of the instant invention wherein a protein/polypeptide carrier having the following
structure:
is covalently attached to a protein/polypeptide carrier,
wherein,
[0064] C is a protein/polypeptide carrier and X is a derivatizable functional group on an
amino acid residue on the protein/polypeptide carrier or optionally on an amino acid residue
on a peptide linker covalently attached to the protein/polypeptide carrier, and wherein m is an
integer greater than 0, but less than or equal to 85, is covalently attached to a peptide
immunogen and wherein the peptide immunogen-protein/polypeptide carrier conjugate has
the following formula, is represented by the following formula:
wherein,
[0065] C is the protein/polypeptide carrier and a derivatized functional group on an
amino acid residue on the protein/polypeptide carrier or optionally on an amino acid residue
on a peptide linker covalently attached to the protein/polypeptide carrier, P is a peptide
immunogen covalently attached to the derivatized functional group on the amino acid residue
on the protein/polypeptide carrier or optionally on an amino acid residue on a peptide linker
covalently attached to a protein/polypeptide carrier, R is a capping molecule covalently
attached to the derivatized functional group on an amino acid residue on the
protein/polypeptide carrier or optionally on an amino acid residue on a peptide linker
covalently attached to a protein/polypeptide carrier thereby preserving the functionality of the
carrier, such that it retains its ability to elicit the desired immune responses against the
peptide immunogen that would otherwise not occur without a carrier., n is an integer greater
than 0, but less than or equal to 85, and p is an integer greater than 0, but less than 85.
Selection Of Carriers
[0066] Some peptide imrnunogens contain the appropriate epitope for inducing an immune
response, but are too small to be immunogenic. In this situation, the peptide imrnunogens are
linked to a suitable carrier to help elicit an immune response. In the above schematic
representation of the peptide immunogens-carrier conjugate generated by a process of the
present invention, C,is a protein/polypeptide carrier to which peptide immunogens are
conjugated directly via derivatized functional groups on amino acid residues on the carrier
themselves or indirectly via derivatized functional groups on peptide linkers covalently
attached to the carriers. Suitable protein/polypeptide carriers include, but are not limited to,
albumin (including humanserum albumin), keyhole limpet hemocyanin, immunoglobulin
molecules, thyroglobulin, ovalbumin, MSCRAMMS, tetanus toxoid, or a toxoid from other
pathogenic bacteria having reduced toxicity, including mutants, such as diphtheria, E. coli,
cholera, or H. pylori, or an attenuated toxin derivative. One such carrier is the CRMi97
protein (SEQ JD NO.:40) that is cross-reactive with diphtheria toxin.
[0067] Other carriers include T-cell epitopes that bind to multiple MHC alleles, e.g., at
least 75% of all human MHC alleles. Such carriers are sometimes known in the art as
universal T-cell epitopes." Exemplary carriers with universal T-cell epitopes include:
Influenza Hemagglutinin: HA307-3i9 PKYVKQNTLKLAT
(SEQ.IDNO.il)
PAN-DR Peptide (PADRE peptide) AKXVAAWTLKAAA
(SEQ. ID NO. 12)
Malaria CS: T3 epitope EKKIAKMEKASSVFNV
(SEQ. ID NO. 13)
Hepatitis B surface antigen: HBsAgi9.28 FELLTRILTI
(SEQ. ID NO. 14)
Heat Shock Protein 65: hsp65i53-m QSIGDLIAEAMDKVGNEG
(SEQ. ED NO. 15)
Bacillus Calmette-Guerin (BCG) ' QVHFQPLPPAWKL
(SEQ. ID NO. 16)
Tetanus toxoid: TT83o.844 QYKANSKFIGITEL
(SEQ. ID NO. 17)
Tetanus toxoid: TT947.967 NNFTVSFWLRVPKVSASHLE
(SEQ. ID NO. 18)
HTV gp!20 Tl: KQIINMWQEVGKAMY
(SEQ. ID NO. 19)
See the Brief Description of the
Sequences (SEQ ID N0.:40)
[0068] Other carriers for stimulating or enhancing an immune response and to which a
peptide immunogen or a hapten can be conjugated include cytokines such as IL-1, IL-1 a and
P peptides, IL-2, yINF, IL-10, GM-CSF, and chemokines, such as MIP la and p and
RANTES. Immunogenic peptides can also be linked to proteins/peptide carriers that enhance
transport across tissues, as described in O'Mahony, WO 97/17163 and WO 97/17614, which
are hereby incorporated by reference in their entirety for all purposes.
[0069] Still further carriers include recombinant Streptococcal C5a peptidase,
Streptococcuspyogenes ORFs 1224, 1664 and 2452, Chlamydia pneumoniae OKFs T367
and T858, Streptococcus pneumonia pneumolysin, pneumolysin mutants with reduced
toxicity, growth factors, and hormones.
[0070] In one preferred embodiment of the present invention, the carrier protein is CRM197
a non-toxic mutant of diphtheria toxin with one amino acid change in its primary sequence.
The glycine present at the amino acid position 52 of the molecule is replaced with a glutamic
acid due to a single nucleic acid codon change. Due to this change, the protein lacks ADPribosyl
transferase activity and becomes non-toxic. It has a molecular weight of 58,408 Da.
CRM197 is produced in large quantities by recombinant expression in accordance with U.S.
Patent 5,614,382, which is hereby incorporated by reference. Conjugations of saccharides as
well as peptides to CRM197 are carried out by linking through the s-amino groups of lysine
residues. It has been well established through several commercial products that CRM197 is an
excellent and safe carrier for B-cell epitopes.
Immunogenic Peptides
[0071] As used herein, the term "peptide immunogen " or "hapten " is any protein or
subum't structure/fragment/analog derived therefrom that can elicit, facilitate, or be induced to
produce an immune response on administration to a mammal. In particular, the term is used
to refer to a polypeptide antigenic determinant from any source (bacteria, virus or eukaryote),
which may be coupled to a carrier using a method disclosed herein. Such polypeptide
immunogen/antigenic determinants maybe of viral, bacterial or eukaryotic cell origin.
[0072] Peptide immunogens can be conjugated to a carrier for use as an immunotherapeutic
in the prevention, treatment, prophylaxis or amelioration of various human diseases. Such
peptide immunogens include those derived from A/3 a peptide of 39-43 arnino acids,
preferably 42 amino acids, which is the principal component of characteristic plaques of
Alzheimer's disease (AD) (see US 4,666,829; Glenner & Wong (1984) Biochem. Biophys,
Res. Commun. 120: 1131, Hardy (1984) TINS20: 1131; Hardy (1977) I7NS20: 154), those
derived from amyloid peptides of amylin, a polypeptide material produced by pancreatic islet
cells that has been implicated in type n diabetes, peptides derived from low density
lipoprotein gene products, which have been implicated in atherosclerosis and antigenic
peptides derived from inflammatory cytokines and growth factors such as interleukin 6 (IL-
6), tumor necrosis factor a (TNF-a) and GDF-8. Such eukaryotic peptide immunogens may
include either T-cell (CTL) or B-cell epitope, also known as ß-amyloid protein, or A4
peptide.
[0073] Ap, also known as p-amyloid peptide, or A4 peptide (see US 4,666,829; Glenner &
Wong, Biochem, Biophys. Res. Commun., 120, 1131 (1984)), is a peptide of 39-43 amino
acids, which is the principal component of characteristic plaques of Alzheimer's disease. Ap
is generated by processing of a larger protein APP by two enzymes, termed p and y secretases
(see Hardy, TINS 20, 154 (1997)). Known mutations in APP associated with Alzheimer's
disease occur proximate to the site of p or y secretase, or within Ap. For example, position
717 is proximate to the site of y-secretase cleavage of APP in its processing to Ap, and
positions 670/671 are proximate to the site of p-secretase cleavage. It is believed that the
mutations cause AD by interacting with the cleavage reactions by which Ap is formed so as
to increase the amount of the 42/43 amino acid form of Ap generated.
[0074] Ap has the unusual property that it can fix and activate both classical and alternate
complement cascades. In particular, it binds to Clq and ultimately to C3bi. This association
facilitates binding to macrophages leading to activation of B cells, hi addition, C3bi breaks
down further and then binds to CR2 on B cells in a T cell dependent manner leading to a
10,000-fold increase in activation of these cells. This mechanism causes Ap to generate an
immune response in excess of that of other antigens.
[0075] Ap has several natural occurring forms. The human forms of Ap are referred to as
AP39, AP40, AP41, Ap42 and AP43. The sequences of these peptides and their relationship
to the APP precursor are illustrated by Figure 1 of Hardy et al., TINS 20,155-158 (1997).
For example, A(342 has the sequence:
H2N-Asp-Ala-Giu-Phe-Arg-His-Asp-Ser-Gly-Tyr-Glu-Val-His-
His-Gln-Lys-Leu-Val-Phe-Phe-Ala-Glu-Asp-Val-Gly-Ser-Asn-
Lys-Gly-Ala-IIe-ne-Gly-Leu-Met-Val-Gly-Gly-Val-Val-ne-
Aa-OH (SEQ ED NO. 21).
Aß41, Ap40 and AP39 differ from Ap42 by the omission of Ala, Ala-lie, and Ala-Ile-Val
respectively from the C-terminal end. AP43 differs from Ap42 by the presence of a
threonine residue at the C-terminus.
[0076] Peptide imrnunogens which are fragments.of-Ap are advantageous relative to the
intact molecule for use in the present methods for several reasons. First, because only certain
epitopes within Ap induce a useful immunogenic response for treatment of Alzheimer's
disease, an equal dosage of mass of a fragment containing such epitopes provides a greater
molar concentration of the useful immunogenic epitopes than a dosage of intact Ap. Second,
certain peptide immunogens of Ap generate an immunogenic response against amyloid
deposits without generating a significant immunogenic response against APP protein from
which Ap derives. Third, peptide immunogens of Ap are simpler to manufacture than intact
Ap due to their shorter size. Fourth, peptide irnmunogens of Ap do not aggregate in the same
manner as intact Ap, simplifying preparation of conjugates with carriers.
[0077] Some peptide immunogens of Ap have a sequence of at least 2, 3, 5,6,10, or 20
contiguous amino acids from a natural peptide. Some peptide immunogens have no more
than 10,9, 8, 7, 5 or 3 contiguous residues from Ap. In a preferred embodiment, peptide
immunogens from the N-terminal half of Ap are used for preparing conjugates. Preferred
peptide immunogens include Apl-5,1-6,1-7,1-10, 1-11,3-7,1-3, and 1-4. The designation
A 1-5 for example, indicates an N-terminal fragment including residues 1-5 of Ap. A(3
fragments beginning at the N-terminus and ending at a residue within residues 7-11 of Ap are
particularly preferred. The fragment Apl-12 can also be used but is less preferred. In some
methods, the fragment is an N-terminal fragment other than Apl-10. Other preferred
fragments include AP13-28,15-24,1-28,25-35,35-40, 35-42 and other internal fragments
and C-terminus fragments.
[0078] Some Aßpeptides of the invention are immunogenic peptides that on administration
to a human patient or animal generate antibodies that specifically bind to one or more
epitopes between residues 16 and 25 of Aß Preferred fragments include Aß 16-22, 16-23, 17-23,17-24,18-24, and 18-25. Antibodies specifically binding to epitopes between residues 16 and 25 specifically bind to soluble Aß without binding to plaques of Aß These types of antibody can specifically bind to soluble Aß in the circulation of a patient or animal model without specifically binding to plaques of Aß deposits in the brain of the patient or model. The specific binding of antibodies to soluble Aß inhibits the Aß from being incorporated into plaques thus either inhibiting development of the plaques in a patient or inhibiting a further increase in the size or frequency of plaques if such plaques have already developed before treatment is administered.
[0079] Preferably, the fragment of Aß administered lacks an epitope that would generate a T-cell response to the fragment. Generally, T-cell epitopes are greater than 10 contiguous amino acids. Therefore, preferred fragments of Aß are of size 5-10 or preferably 7-10 contiguous amino acids or most preferably 7 contiguous amino acids; i.e., sufficient length to generate an antibody response without generating a T-cell response. Absence of T-cell epitopes is preferred because these epitopes are not needed for immimogenic activity of fragments, and may cause an undesired inflammatory response in a subset of patients (Anderson et al., (2002) J. Immunol. 168, 3697-3701; Senior (2002) Lancet Neurol. 1, 3).
[0080] Fragment A/315-25 and subfragments of 7-8 contiguous amino acids thereof are preferred because these peptides consistently generate a high immunogenic response to Aß peptide. These fragments include Aß16-22, Aß16-23, Aß16-24, Aß17-23, Aß17-24, Aßl8-24, and Aß18-25. Particularly preferred Aß15-25 subfragments are 7 contiguous amino acids iu length. The designation Aß15-21 for example, indicates a fragment including residues 15-21 of Aß and lacking other residues of Aß and preferably 7-10 contiguous amino acids. These fragments can generate an antibody response that includes end-specific antibodies.
[0081.] Peptide immunogens of Aßs require screening for activity in clearing or preventing amyloid deposits (see WO 00/72880 (Indian Patent No.: 206050), which is incorporated herein in its entirety for all purposes). Administration of N-terminal fragments of Aß induces the production of antibodies that recognize Ap deposits in vivo and in vitro. Fragments lacking at least one, and sometimes at least 5 or 10 C-terminal amino acids present in naturally occurring forms of Aß are used in some methods. For example, a fragment lacking 5 amino acids from the C-terminal end of Aß43 includes the first 38 amino acids from the N-terminal end of Aß.
[0082] Unless otherwise indicated, reference to Ap includes the natural human amino acid
sequences indicated above as well as analogs including allelic, species and induced variants.
Analogs typically differ from naturally occurring peptides at one, two or a few positions,
often by virtue of conservative substitutions. Analogs typically exhibit at least SO or 90%
sequence identity with natural peptides. Some analogs also include unnatural amino acids or
modifications of N- or C-terminal amino acids at one, two, or a few positions. For example,
the natural aspartic acid residue at position 1 and/or 7 of Aß can be replaced with iso-aspartic
acid. [0083] Examples of unnatural amino acids are D, alpha, alpha-disubstituted amino acids,
N-alkyl amino acids, lactic acid, 4-hydroxyproline, gamma-carboxyglutamate, epsilon-
N,N,N-trimethyllysme, epsilon-N-acetyllysine, O-phosphoserine, N-acetylserine, N-
formylmcthionine, 3-methylhistidine, 5-hydroxylysine, omega-N-methylarginine, ß-alanine,
ornithine, norleucine, norvaline, hydroxproline, thyroxine, gamma-amino butyric acid,
hornoserine, cirrulline, and isoaspartic acid, fmmunogenic peptides also include analogs of
Aß and fragments thereof. Some therapeutic agents of the invention are all-D peptides, e.g.,
all-D Aß, all-D Aß fragment, or analogs of all-D Aß or all-D Aß fragment. Fragments and
analogs can be screened for prophylactic or therapeutic efficacy in transgenic animal models, in comparison with untreated or placebo controls as described in WO 00/72880 ((Indian Patent No.: 206050).
[0084] Peptide immunogens also include longer polypeptides that include, for example, an
immunogenic of Aß peptide, together with other amino acids. For example, preferred
immunogenic peptides include fusion proteins comprising a segment of Aß linked to a
heterologous amino acid sequence that induces a helper T-cell response against the
heterologous amino acid sequence and thereby a B-cell response against the Ap segment.
Such polypeptides can be screened for prophylactic or therapeutic efficacy in animal models in comparison with untreated or placebo controls as described in WO 00/72880 ((Indian Patent
No.: 206050).
[0085] The Aß peptide, analog, immunogenic fragment or other polypeptide can be
administered in disaggregated or aggregated form. Disaggregated Aß or fragments thereof
means monomeric peptide units. Disaggregated Aß or fragments thereof are generally
soluble, and are capable of self-aggregating to form, soluble oligomers, protofibrils and
ADDLs. Oligomers of.Aß and fragments thereof are usually soluble and exist predominantly
as alpha-helices or random coils. Aggregated Aß or fragments thereof ineans oligomers of
Aß or fragments thereof that have associate into insoluble beta-sheet assemblies. Aggregated
Aß or fragments thereof also means fibrillar polymers. Fibrils are usually insoluble. Some
antibodies bind both soluble Aßor fragments thereof and aggregated Aß or fragments
thereof'
[0086] Immunogenic peptides also include multimers of monomeric immunogenic
peptides. unmunogenic peptides other than Ap peptides should induce an immunogenic
response against one or more of the preferred fragments of A(3 listed above (e.g., Apl-3, 1-7,
1-10, and 3-7).
[0087] Immunogenic peptides of the present invention are linked to a carrier using a
method of the present invention to form a conjugate. The immunogenic peptide can be linked
at its amino terminus, its carboxyl terminus, or both to a carrier to form a conjugate.
Optionally, multiple repeats of the unmunogenic peptide can be present in the conjugate.
[0088] An N-terminal fragment of Ap can be linked at its C-terminus to a carrier peptide to
form a conjugate. In such conjugates, the N-terminal residue of the fragment of Ap
constitutes the N-terminal residue of the conjugate. Accordingly, such conjugates are
effective in inducing antibodies that bind to an epitope that requires the N-terminal residue of
to be in free form. Some immunogenic peptides of the invention comprise a plurality of
repeats of an N-terminal segment of Ap linked at the C-terminus to one or more copy of a
carrier peptide to form a conjugate. The N-terminal fragment of Ap incorporated into such
conjugates sometimes begins at Apl-3 and ends at AP7-11. Apl-7, 1-3, 1-4, 1-5, and 3-7 are
preferred N-terminal fragment of. Some conjugates comprise different N-terminal
segments of in tandem. For example, a conjugate can comprise Aß-7 followed by Aßl-
3 linked to a carrier.
[0089] In some conjugates, an N-terminal segment of Ap is linked at its N-terminal end to
a carrier peptide. The same variety of N-terminal segments of Ap can be used as with Cterminal
linkage. Some conjugates comprise a carrier peptide linked to the N-terminus of an
N-terminal segment of which is in turn linked to one or more additional N-terminal
segments of in tandem. Preferably, such immunogenic Ap fragments, once conjugated to
an appropriate carrier, induce an immunogenic response that is specifically directed to the Ap
fragment without being directed to other fragments o
[0090] Immunogenic peptides of the invention include immunogenic heterologous
peptides. In some immunogenic peptides, an A fragment is linked to a carrier to form an
immunogenic heterologous peptide. This heterologous peptide is linked to a carrier using a
method of the present invention to form a conjugate. Some of these immunogenic
heterologous peptides comprise fragments of Aßlinked to tetanus toxoid epitopes such as
described in US 5,196,512, EP 378,881 and EP 427,347. Optionally, an immunogenic
peptide can be linked to one or multiple copies of a carrier, for example, at both the N and C
termini of the carrier to form an immunogenic heterologous peptide. Other of these
immunogenic heterologous peptides comprise fragments of Ap linked to carrier peptides
described in US 5,736,142. For example, an immunogenic heterologous peptide can
comprise A(31-7 followed by A|31-3 followed by a carrier. Examples of such immunogenic
heterologous peptides include:
AP 1-7/Tetamis toxoid 830-844 + 947-967 in a linear configuration
DAEFHD-QYIKANSKFIGITELFNNFTVSFWLRVPKVSASHLE
(SEQE)NO
[0091] Peptides described in US 5,736,142 (all in linear configurations):
PADRE/Ap 1-7:
AKXVAAWTLKAAA-DAEFRHD (SEQ ID N0.:26)
Apl-7x3/PADRE:
DAEFRHD-DAEFRHD-DAEFRHD-AKXVAAWTLKAAA (SEQ ID NO.:27)
PADPvE/Apl-7x3:
AKXVAAWTLKAAA-DAEFRHD-DAEFRHD-DAEFRHD (SEQ ID NO.:28)
AP1-7/PADRE:
DAEFRHD-AKXVAAWTLKAAA (SEQ ID N0.:29)
Apl-7/albumin fragment:
DAEFRHD-ISQAVHAAHAEINEAGR (SEQ ID NO.:30)
Ap4-10/albumin fragment:
FRHDSGY-ISQAVHAAHAEINEAGR (SEQ ID NO.:31)
Ap3-9/albumin fragment:
EFRHDSG-ISQAVHAAHAEINEAGR (SEQ ID NO.:32)
PKYVKQNTLKLAT-DAEFRHD-DAEFRHD-DAEFRHD (SEQ ID NO.-.33)
DAEFRHD-PKYVKQNTLKLAT-DAEFRHD (SEQ ID NO.:34)
ADAEFRHD-DAEFRHD-DAEFRHD-PKYVKQNTLKLAT (SEQ ID NO.:35)
DAEHIHD-DAEFRHD-PKYVKQNTLKLAT (SEQ ID NO.:36)
DAEFRHD-PKYVKQNTLKXAT-EKK1AKMEKASSWNV-QYIKANSKFIGITELFNNFTVSFWLRVPKVSASHLE-
DAEFRHD (SEQ ID NO.:37)
DAEFPJID-DAEFRHD-DAEFRHD-QYIKANSKFIGITEL-CFNNFTVSFWLRVPKVSASHLE
(SEQ ID NO.:38)
DAEFRHD-QYIKANSKFIGITELCFNNFTVSFWLRVPKVSASHLE
(SEQIDNO.:39)
DAEFRHD-QYIKANSKFIGITEL-C-FNOTTVSFWLRVPKVSASHLE-DAEFRHD
(SEQE)NO.:20)
[0092] Some immunogenic heterologous peptides comprise a multimer of immunogenic
peptides represented by the formula 2X, in which x is an integer from 1-5. Preferably x is 1, 2
or 3, with 2 being most preferred. When x is two, such a multimer has four immunogenic
peptides linked in a preferred configuration referred to as MAP4 (see US 5,229,490). Such
immunogenic peptides are then linked to a carrier using a method of the present invention to
form a conjugate.
[0093] The MAP4 configuration is shown below, where branched structures are produced
by initiating peptide synthesis at both the N-terminal and side chain amines of lysine.
Depending upon the number of times lysine is incorporated into the sequence and allowed to
branch, the resulting structure will present multiple N-termini. In this example, four identical
N-termini have been produced on the branched lysine-containing core. Such multiplicity
greatly enhances the responsiveness of cognate B cells.
Peptide
Peptide
[0094] Examples of such immunogenic heterologous peptides include:
Ap r-7/Tetanus toxoid 830-844 in a MAP4 configuration:
DAEFRHD-QYIKANSKFIGITEL (SEQ ID NO.:22)
Ap 1-7/Tetanus toxoid 947-967 in aMAP4 configuration:
DAEFRHD-FNNFTVSFWLRVPKVSASHLE (SEQ ID NO.:23)
Ap 3-9/Tetanus toxoid 830-844 in a MAP4 configuration:
EPRHDSG-QYIKANSKFIGITEL (SEQ ID NO..-25)
DAEFRHD-QYIKANSKFIGITEL on a 2 branched resin
Lys-Gly-Cys
[0095] The Ap peptide, analog, active fragment or other polypeptide can be administered in
associated or multimeric form or in dissociated form. Therapeutic agents also include
multimers of monomeric immunogenic agents. Agents other than AP peptides should induce
an immunogenic response against one or more of the preferred fragments of Ap listed above
(e.g., 1-10,1-7, 1-3, and 3-7), and can also be conjugated to e. carrier using a method of the
present invention. Preferably, such agents, once conjugated to an appropriate carrier,, induce
an immunogenic response that is specifically directed to one of these fragments without being
directed to other fragments of Ap. To facilitate the conjugation of an peptide immunogen
with a carrier, additional amino acids can be added to the termini of the antigenic
determinants. The additional residues can also be used for modifying the physical or chemical
properties of the peptide immunogen. Amino acids such as tyrosine, cysteine, lysine,
glutamic or aspartic acid, or the like, can be introduced at the C- or N- terminus of the peptide
immunogen. Additionally, peptide linkers containing amino acids such as glycine and alanine
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can also be introduced. In addition, the antigenic determinants can differ from the natural
sequence by being modified by terminal NHa-group acylation, e.g., by alkanoyl (C1-C20) or
thioglycolyl acetylation, terminal-carboxy amidation,, e.g., ammonia, methylamine, etc. In
some instances these modifications may provide sites for linking to a support or other
molecule.
[0096] The peptide immunogens used to generate conjugates of the present invention using
a process disclosed herein can be combined via linkage to form polymers (rnultimers), or can
be formulated in a composition without linkage, as an admixture. Where a peptide is linked
to an identical peptide, thereby forming a homopolymer, a plurality of repeating epitopic
units are presented. For example, multiple antigen peptide (MAP) technology is used to
construct polymers containing both CTL and/or antibody peptides and peptides. A "CTL
epitope" is one derived from selected eptiopic regions of potential target antigens. When the
peptides differ, e.g., a cocktail representing different viral subtypes, different epitopes within
a subtype, different HLA restriction specificities, or peptides which contain T-helper
epitopes, heteropolymers with repeating units are provided. In addition to covalent linkages,
noncovalent linkages capable of forming intermolecular and intrastructural bonds are also
contemplated.
[0097] Such peptide immunogens and their analogs are synthesized by solid phase peptide
synthesis or recombinant expression, or are obtained from natural sources. Automatic
peptide synthesizers are commercially available from numerous suppliers, such as Applied
Biosystems, Foster City, California.
[0098] Recombinant expression can be in bacteria (such as E. colt), yeast, insect cells or
mammalian cells. Procedures for recombinant expression are described by Sambrook et al.,
Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Press, NY, 2nd ed., 1989).
Some immunogenic peptides are also available commercially (e.g., American Peptides
Company, Inc., Sunnyvale, CA, and California Peptide Research, Inc., Napa, CA).
[0099] Random libraries of peptides or other compounds can also be screened for
suitability as a peptide immunogen. Combinatorial libraries can be produced for many types
of compounds that can be synthesized in a step-by-step fashion. Such compounds include
polypeptides, beta-turn mimetics, hormones, oligomeric ^-substituted glycines, and
oligocarbamates and the like. Large combinatorial libraries of the compounds can be
constructed by the encoded synthetic libraries (ESL) method described in WO 95/12608, WO
93/06121, WO 94/08051, WO 95/35503 and WO 95/30642 (each of which is incorporated by
reference for all purposes). Peptide libraries can also be generated by phage display methods
(see, e.g., Devlin, WO 91/18980).
Derivatization and Conjugation of an momunogenic Peptide to a Protein Carrier
[0100] The site of attachment of a peptide immunogen to a protein/polypeptide carrier, and
the nature of the cross-linking agent that is used to attach a peptide immunogen to the carrier
are both important to the specificity of the resultant antibody generated against it. For proper
recognition, the peptide immunogen must be coupled to the carrier with the appropriate
orientation. For an antibody to recognize subsequently the free peptide immunogens without
carrier, the peptide immunogen-protein/polypeptide carrier conjugate must present the
peptide immunogens in an exposed and accessible form. Optimal orientation is often
achieved by directing the cross-linking reaction to specific sites op the peptide immunogens.
One way to achieve this with a peptide immunogen is by attaching a terminal cysteine residue
during peptide synthesis. This provides a sulfhydryl group on one end of the peptide for
conjugation to the carrier. Cross-linking through this group provides attachment of the
peptide immunogen only at one end, thereby ensuring consistent orientation.
[0101] In peptide immunogen-carrier conjugation, the goal is not to maintain the native
state or stability of the carrier, but to present the hapten in the best possible way to the
immune system. In reaching this goal, the choice of conjugation chemistry may control the
resultant titer, affinity, and specificity of the antibodies generated against the hapten. It may
be important in some cases to choose a cross-linking agent containing a spacer arm long
enough to present the antigen in an unrestricted fashion. It also may be important to control
the density of the peptide immunogen on the surface of the carrier. Too little peptide
immunogen substitution may result in little or no response. A peptide immunogen density
too high actually may cause immunological suppression and decrease the response. In
addition, the cross-linker itself may generate an undesired immune response. These issues
need to be taken into consideration in selecting not only the appropriate cross-linking
reagents, but also the appropriate ratios of protein/polypeptide carrier and peptide
immunogen.
[0102] A variety of means of attaching the protein/peptide carriers to the peptide
immunogens are possible. Ionic interactions are possible through the termini or through the
8-amino group of lysine. Hydrogen bonding between the side groups of the residues and the
peptide immunogen are also possible. Finally, conformation interactions between the
protein/peptide carriers and the immunogenic peptide may give rise to a stable attachment.
[0103] Peptide immunogens-carrier conjugates have been successfully generated using
various cross-linking reagents such as zero-length, homobifunctional or heterobifunctional
cross linkers. The smallest available reagent systems for bioconjugation are the so-called
zero-length cross-linkers. These compounds mediate the conjugation of two molecules by
forming a bond containing no additional atoms. Thus, one atom of a molecule is spacer. la
many conjugation schemes, the final complex is bound together by virtue of chemical
components that add foreign structures to the substances being cross-linked. In some
applications, the presence of these intervening linkers may be detrimental to the intended use.
For instance, in the preparation of peptide immunogen-carrier conjugates the complex is
formed with the intention of generating an immune response to the attached hapten.
Occasionally, a portion of the antibodies produced by this response will have specificity for
the cross-Unking agent used in the conjugation procedure. Zero-length cross-Unking agents
eliminate the potential for this type of cross-reactivity by mediating a direct linkage between
two substances.
[0104J Homobifunctional reagents, which were the first cross-Unking reagents used for
modification and conjugation of macromolecules, consisted of bireactive compounds
containing the same functional group at both ends (Hartman and Wold, 1966). These
reagents could tie one protein to another by covalently reacting with the same common
groups on both molecules. Thus, the lysine e-amines or N-terminal amines of one protein
could be cross-linked to the same functional groups on a second protein simply by mixing the
two together in the presence of the homobifunctional reagent.
[0105] Heterobifunctional conjugation reagents contain two different reactive groups that
can couple to two different functional targets on proteins and other macromolecules. For
example, one part of a cross-linker may contain an amine-reactive group, while another
portion may consist of a sulfhydryl-reactive group. The result is the abiUty to direct the
cross-linking reaction to selected parts of target molecules, thus garnering better control over
the conjugation process.
[0106] Heterobifuntional reagents are used to cross-link proteins and other molecules in a
two-or three-step process that limits the degree of polymerization often obtained using
homobifunctional cross-linkers.
[0107] Many methods are currently available for coupling of peptide immunogens to
protein/polypeptide carriers using zero-length, homobifunctional or heterobifunctional
crosslinkers. Most methods create amine, amide, urethane, isothiourea, or disulfide bonds,
or in some cases thioethers. The more general method of coupling proteins or peptides to
peptides utilizes bifunctional crossIinMng reagents. These are small spacer molecules having
active groups at each end. The spacer molecules can have identical or different active groups
at each end. The most common active functionalities, coupling groups, and bonds formed
are:
1. Aldehyde - arnino secondary amine
2. Maleimido - sulfhydryl (thioether
3. Succinimido - amino ( amide
4. Imidate esters - amino (- amide
5. Phenyl azides - amino (phenyl amine
6. Acyl halide - sulfhydryl (thioether
7. Pyridyldisulfides - sulfhydryl ( disulfide
8. Lsothiocyanate - amino (isothiourea.
[0108] The reactivity of a given carrier protein, in terms of its ability to be modified by a
cross-linking agent such that it can be conjugated to an peptide immunogen, is determined by
its amino acid composition and the sequence location of the individual amino acids in the
three dimensional structure of the molecule, as well as by the amino acid composition of the
peptide immunogen.
[0109] In the case of linkers between protein/peptide carriers and other peptides (e.g.,
a protein/peptide carriers and an peptide immunogen), the spacers are typically selected from
Ala, Gly, or other neutral spacers of nonpolar amino acids or neutral polar amino acids. In
certain embodiments the neutral spacer is Ala, It will be understood that the optionally
present spacer need not be comprised of the same residues and thus may be a hetero- or
homo-oligomer. Exemplary spacers include homo-oligomers of Ala. When present, the
spacer will usually be at least one or two residues, more usually three to six residues. In other
embodiments the protein/polypeptide carrier is conjugated to an peptide immunogen,
preferably with the protein/peptide carrier positioned at the amino terminus. The peptide may
be joined by a neutral linker, such as Ala-Ala-Ala or the like, and preferably further contain a
lipid residue such palmitic acid or the like which is attached to alpha and epsilon amino
groups of a Lys residue ((PAM)2Lys), which is attached to the amino terminus of the peptide
conjugate, typically via Ser-Ser linkage or the like.
[0121] In some aspects of the invention, the peptide immunogen is an A/3 fragment selected
from the group consisting of A/31-5-L, A/31-7-L, Aß-9-L, and Aj81-12-L. In some aspects of
the invention the linker is GAGA (SEQ ID NO:10).
[0122] To facilitate the conjugation of a peptide immunogen with a carrier, additional amino
acids can be added to the termini of the antigenic determinants. The additional residues can
also he used for modifying the physical or chemical properties of the peptide immunogen.
Amino acids such as tyrosine, cysteine, lysine, glutamic or aspartic acid, or the like, can be
introduced at the C- or N- terminus of the peptide immunogen. Additionally, peptide linkers
containing amino acids such as glycine and alanine can also be introduced. In addition, the
antigenic determinants can differ from the natural sequence by being modified by terminal
NH2-group acylation, e.g., by alkanoyl (C1-C20) or thioglycolyl acetylation, terminalcarboxy
amidation, e.g., ammonia, methylamine, etc. In some instances these modifications
may provide sites for Unking to a support or other molecule.
[0110] In some aspects of the invention, the peptide immunogen is an Aß fragment selected
from the group consisting of Aß1-5-C, A/31-7-C, A01-9-C, and A01-12-C, where C is a
cysteine amino acid residue. In some aspects of the invention, the peptide immunogen is an
A fragment selected from the group consisting of Aß1-5-L-C, A|61~7-L-C, A/31-9-L-Q, and
A1-12-L-C.
[0111] The peptide immunogen is linked to the protein/peptide carrier either directly or via
a linker either at the amino or carboxy terminus of the peptide immunogen. The amino
terminus of either the peptide immunogen or the protein/peptide carrier may be acylated. In
addition, the peptide immunogen -protein/peptide carrier conjugate may be linked to certain
alkanyol (Ci-Cao) lipids via one or more linking residues such as Gly, Gly-Gly, Ser, Ser-Ser
as described below. Other useful lipid moieties include cholesterol, fatty acids, and the like.
[0112] Peptide immunogens can be linked to a carrier by chemical crosslinking.
Techniques' for linking an immunogen to a carrier include the formation of disulfide linkages
using N succinimidyl-3-(2-pyridyl-thio) propionate (SPDP) (Carlsson, J et al. (1978)
Biochem J, 173: 723,) and succinimidyl 4-(jV-maleirnidomethyl) cyclohexane-1-carboxylate
(SMCC) (if the peptide lacks a sulfhydryl group, this can be provided by addition of a
cysteine residue to the hapten). These reagents create a disulfide linkage between themselves
and peptide cysteine resides on one protein and an amide linkage through the e-amino on a
lysine, or other free amino group in other amino acids. A variety of such disulfide/amideforming
agents are described in Immuno. Rev. 62: 85 (1982). Other bifunctional coupling
agents form a thioether rather than a disulfide linkage. The thioether forming agents include
reactive ester of 6-maleimidocaproic acid, 2-bromoacetic acid, and 2-iodoacetic acid, 4-(Armaleimido-
methyl) cyclohexane-1-carboxylic acid. The carboxyl groups can be activated by
combining them with succinimide or l-hydroxyl-2-rritro-4-sulfonic acid, sodium salt.
[0113] Most frequently, lysine residues are the most abundant amino acid residues found
on carrier proteins, and these residues are modified using cross-linking reagents to generate
neucleophilic sites that are then coupled to a hapten. This coupling is achieved via any of the
hydrophilic side chains on the hapten molecules that are chemically active. These include the
guanidyl group of arginine, the (-carboxyl groups of glutamate and aspartic acid, the
sulfhydryl group of cysteine, and the e-amino group of lysine, to name a few. Modification
of proteins such that they can now be coupled to other moieties is achieved using crosslinking
reagents, which react with any of the side chains on the protein carrier or hapten molecules.
[0114] In one aspect of the present invention, the carrier protein with or without a linker
molecule is functionalized (derivatized) with a reagent that introduces reactive sites into the
carrier protein molecule that are amenable to further modification to introduce nucleophilic
groups. In one embodiment, the carrier is reacted with a haloacetylating reagent, which
preferentially reacts with a number of functional groups on amino acid residues of proteins
such as the sulfhydryl group of cysteine, the primary 6-amine group of lysine residue, the a
terminal of a-amines, the thioether of methionine and both imidazoyl side chain nitrogens of
histidine (Gurd, 1967). In a preferred embodiment, the primary e-amine groups on lysine
residues of the carrier protein are derivatized with b N-hydroxysuccinimidyl bromoacetate to
generate a bromoacetylated carrier. Conjugation of peptide immunogen and the activated
protein carrier was carried out by slowly adding the activated carrier to the solution
containing the peptide immunogen.
[0115] By using the process of this invention, the peptide immunogens discussed in section
B, above, maybe conjugated to any of the'carriers discussed in section A, above. The
conjugates resulting from the process of this invention are used as immunogens for the
generation of antibodies against Ap for use in passive/active immunotherapy. Furthermore,
Ap or an Ap fragment linked to a carrier can be administered to a laboratory animal in the
production of monoclonal antibodies to Ap.
[0116] In one aspect of the invention, the conjugate is a conjugate selected from the group
consisting of Aß1-7-CRM197 (A-7 x 3)-CRM197 and (A/31-7 x 5)-CRM197. hi one aspect
of the invention, the conjugate is a conjugate selected from the group consisting of CRMi97-
A1-5, CRM197-A/31-7, CRM197-A01-9, and CKM1W-A01-12. In another aspect of thenvention, the conjugate is a conjugate selected from the group consisting of A01-5-CCRM!
, A01-7-C-CRMi97, Aj31-9-C-CRMi97, and Ap\-U-C-CKM197, A/816-23-C~CRM]97,
A017-24-C-CRM197, A/318-25-C-CRMi97, CRMi97-C-A/?16-23, CRMi97-C-A/317-24,
CRMi9rC-A|318-25, A016-22-C-CRM197, A/317-23-C-CRMi97, A/318-24-C-CRM197,
CRMi97-C-A|316-22, CRMi97-C-A/317-23, and CRMi97-C-A/318-24. A|81-9-C-CRM197) and
A1-12-C-CRMi97. In yet another aspect of the invention, the conjugate is a conjugate
selected from the group consisting of selected from the group consisting of A/31-5-L-CCRMi97,
A1-7-L-C-CRMi97, A/31-9-L-C-CRMi97, and Aj31-12-L-C-CRM197.
[0117] A disadvantage to the use of coupling reagents, which introduce reactive sites into
the side chains of reactive amino acid molecules on carrier and /or hapten molecules, is that
the reactive sites if not neutralized are free to react with any unwanted molecule either in
vitro or in vivo. In the process of the present invention, capping of the unreacted functional
groups is accomplished by reaction of the conjugates with pendant reactive groups with
reagents which inactivate/cap the reactive groups. Exemplary inactivating/capping reagents
for use with the conjugation process of the present invention include cysteamine, Nacetylcysteamine,
and ethanolamine. Alternatively, capping is accomplished by reaction with
ammonia or ammonium bicarbonate, either of which converts the haloacetyl groups to
aminoacetyl groups. Capping is also accomplished at alkaline pH (9.0-9.8) using sodium
hydroxide or sodium carbonate, which converts the haloacetyl groups to hydroxyacetyl
groups. One potential advantage of converting the haloacetyl groups to aminoacetyl or
hydroxyacetyl groups, as opposed to the reaction with cysteamine derivatives, ethanolamine
etc., is the introduction of relatively smaller size chemical functionalities, by reaction with
ammonia or hydroxide/carbonate. The resulting capped functional groups, e.g. aminoacetyl
or hydroxyacetyl, provide relatively less perturbance in the carrier protein portion of the
conjugate. The capped peptide immunogen-carrier protein is purified as necessary using
known methods, such as chromatography{gel filtration, ion exchange, hydrophobic
interaction or affinity), dialysis, ultrafiltration-diafiltration, selective precipitation using
ammonium sulfate or alcohol, and the like.
Immuno genie Conjugates and Compositions
[0118] The capped peptide irnmunogen-carrier protein conjugates are administered in an
immunogenic composition to mammals, particularly humans, for prophylactic and/or
therapeutic purposes. The conjugates of the present invention are used to elicit and/or
enhance immune responses against immuuogens. For instance, CTL-carrier conjugates are
used to treat and/or prevent viral infection, amyloidogenic diseases, cancer etc. Alternatively,
polypeptide immunogen-carrier conjugates, which induce antibody responses, are also used.
[0119] In therapeutic applications, a conjugate of the present invention is administered to
an individual already suffering from an amyloidogenic disease such as Alzheimer's disease.
Those in the incuhation phase or the acute phase of the disease may be treated with the
conjugate of the present invention separately or in conjunction with other treatments, as
appropriate.
[0120] In therapeutic applications, an immunogenic composition of the present invention is
administered to a patient in an amount sufficient to elicit an effective CTL response or
humoral response to the amyloid plaque, and to cure, or at least partially arrest disease
progression, symptoms and/or complications. An amount adequate to accomplish this is
defined as "therapeutically effective dose." Amounts effective for this use will depend in part
on the peptide composition, the manner of administration, the stage and severity of the
disease being treated, the weight and general state of health of the patient, and the judgment
of the prescribing physician.
i
[0121] Therapeutically effective amounts of the immunogenic compositions of the present
invention generally range for the initial immunization for therapeutic or prophylactic
administration, from about 0 . g to about 10,000 /ig of peptide for a 70 kg patient, usually
from about 0.1 to about 8000 preferably between about 0.1 to about 5000 jag, and most
preferably between 0.1 to about 1,000 /ig. These doses are followed by boosting dosages of
from about 0.1 to about 1000 ng of peptide pursuant to a boosting regimen over weeks to
months depending upon the patient's response and condition by measuring specific immune
responses.
[0122] Further, the present invention is used prophylactically to prevent and/or ameliorate
amyloidogenic disease. Effective amounts are as described above. Additionally, one of
ordinary skill in the art would also know how to adjust or modify prophylactic treatments, as
appropriate, for example by boosting and adjusting dosages and dosing regimes.
[0123] Therapeutic administration may begin at the first sign of the disease. This is
followed by boosting doses until the disease progression is halted or reversed or the
symptoms are substantially abated and for a period thereafter.
[0124] Immunogenic compositions of the present invention for therapeutic or prophylactic
treatment can be administered by parenteral, topical, intravenous, oral, subcutaneous, intraarterial,
intra-cranial, ultra-peritoneal, intra-nasal or mtra-muscular means for prophylactic
and/or therapeutic treatment. One typical route of administration of an immunogenic agent is
subcutaneous, although other routes can be equally effective. Another common route is mtramuscular
injection. This type of injection is most typically performed in the arm or leg
muscles. In some methods, agents are injected directly into a particular tissue where deposits
have accumulated, for example intra-cranial injection. Intra-muscular injection or
intravenous infusion is preferred for administration of antibody, hi some methods, particular
therapeutic antibodies are injected directly into the cranium. Because of the ease of
administration, the immunogerdc compositions of the invention are particularly suitable for
oral administration. The invention further provides immunogenic compositions for parenteral
administration, which comprise a solution of the peptides or conjugates, dissolved or
suspended in an acceptable carrier, preferably an aqueous carrier.
[0125] A variety of diluents, excipients and buffers may be used, e.g., water, buffered
water, phosphate buffered saline, 0.3% glycine, hyaluronic acid and the like. These
compositions may be sterilized by conventional, well-known sterilization techniques, or may
be sterile filtered. The resulting aqueous solutions may be packaged for use as is, or
lyophilized, the lyophilized preparation being combined with a sterile solution prior to
administration. The compositions may contain pharmaceutically acceptable auxiliary
substances as required to approximate physiological conditions, such as buffering agents,
tonicity adjusting agents, wetting agents and the like, for example, sodium acetate, sodium
lactate, sodium chloride, potassium chloride, calcium chloride, sorbitan monolaurate,
triethanolamine oleate, etc.
[0126] For solid compositions, conventional nontoxic solid carriers may be used. These
may include, for example, pharmaceutical grades of mannitol, lactose, starch, magnesium
stearate, sodium saccharin, talcum, cellulose, glucose, sucrose, magnesium carbonate, and the
like. For oral administration, a pharmaceutically acceptable nontoxic composition is formed
by incorporating any of the normally employed excipients, such as those carriers previously
listed, and generally 10-95% of active ingredient, that is, one or more conjugates of the
invention, and more preferably at a concentration of 25-75%.
[0127] The concentration of immunogenic compositions of the present invention in the
pharmaceutical formulations can vary widely, i.e., from less than about 0.1%, usually at or at
least about 2% to as much as 20% to 50% or more by weight, and will be selected primarily
by fluid volumes, viscosities, etc., in accordance with the particular mode of administration
selected.
[0128] The conjugates of the present invention may also be administered via liposomes,
which serve to target the conjugates to a particular tissue, such as lymphoid tissue, or targeted
selectively to infected cells, as well as increase the half-life of the peptide compo.sition.
Liposomes include emulsions, foams, micelles, insoluble monolayers, liquid crystals,
phospholipid dispersions, lamellar layers and the like. In these preparations the composition
to be delivered is incorporated as part of a liposome, alone or in conjunction with a molecule,
which binds to, for example, a receptor prevalent among lymphoid cells. These molecules
would include monoclonal antibodies, which bind to the CD45 antigen, or with other
therapeutic or immunogenic compositions. Thus, liposomes filled with a desired composition
of the present invention can be directed to the site of lymphoid cells, where the liposomes
then deliver the selected therapeutic/immunogenic peptide compositions. Liposomes for use
in the invention are formed from standard vesicle-forming lipids, which generally include
neutral and negatively charged phospholipids and a sterol, such as cholesterol. The selection
of lipids is generally guided by consideration of liposome size, acid lability and stability of
the liposomes in the blood stream. A variety of methods are available for preparing
liposomes, as described in, e.g., Szolca, et al, Ann. Rev. Biophys. Bioeng. 9:467 (1980), U.S.
Pat. Nos. 4,235,871, 4,501,728,4,837,028, and 5,019,369, incorporated herein by reference.
[0129] For aerosol administration, the compositions of the present invention are preferably
supplied in finely divided form along with a surfactant and propellant. Typical percentages
of the composition are 0.01-20% by weight, preferably 1-10%. The surfactant must, of
course, be nontoxic, and preferably soluble in the propellant. Representative of such agents
are the esters or partial esters of fatty acids containing from 6 to 22 carbon atoms, such as
caproic, octanoic, lauric, palmitic, stearic, linoleic, linolenic, olesteric and oleic acids with an
aliphatic polyhydric alcohol or its cyclic anhydride. Mixed esters, such as mixed or natural
glycerides may be employed. The surfactant may constitute 0.1- 20% by weight of the
Patent provided by SughrueMion, PLLC - http://wvinw.sughrue.com
composition, preferably 0.25-5%. The balance of the composition is ordinarily propellant. A
carrier can also be included, if desired, as with lecithin for intranasal delivery.
[0130] Conjugates of the present invention can optionally be administered in combination
with other agents that are at least partly effective in treatment and/or amelioration of a an
amyloid disease and/or its symptoms. In the case of Alzheimer's and Down's syndrome, in
which amyloid deposits occur in the brain, the conjugates of the invention can be
administered in conjunction with other agents that increase passage of the agents of the
invention across the blood-brain barrier.
[0131] The immunogenic composition typically contains an adjuvant. An adjuvant is a
substance that enhances the immune response when administered together with an
immunogen or antigen. A number of cytokines or lymphokines have been shown to have
immune modulating activity, and thus may be used as adjuvants, including, but not limited to,
the interleukins 1-cc, 1-0,2,4, 5,6,7, 8,10, 12 (see, e.g., U.S. Patent No. 5,723,127), 13,14,
15,16,17 and 18 (and its mutant forms), the interferons-a, (J and y, granulocyte-macrophage
colony stimulating factor (see, e.g., U.S. Patent No. 5,078,996) macrophage colony
stimulating factor, granulocyte colony stimulating factor, GSF, and the tumor necrosis factor
a and |3. Still other adjuvants useful in this invention include a chemokine, including without
limitation, MCP-1, MlP-Ia, MDP-lp, and RANTES. Adhesion molecules, such as a selectin,
e.g., L-selectin, P-selectin and E-selectin may also be useful as adjuvants. Still other useful
adjuvants include, without limitation, a mucin-like molecule, e.g., CD34, GlyCAM-1 and
MadCAM-1, amember of the integrin family such as LFA-1, VLA-1, Mac-1 andpl50.95, a
member of the immunoglobulin super family such as PECAM, ICAMs, e.g., ICAM-1,
ICAM-2 and ICAM-3, CD2 and LFA-3, co-stimulatory molecules such as CD40 and CD40L,
growth factors including vascular growth factor, nerve growth factor, fibroblast growth
factor, epidermal growth factor, B 7 , PDGF, BL-1, and vascular endothelial growth factor,
receptor molecules including Fas, TNF receptor, Fit, Apo-1, p55, WSL-1, DR3, TRAMP,
Apo-3, AIR, LARD, NGRF, DR4, DR5, KILLER, TRAIL-R2, TRICK2, and DR6. Still
another adjuvant molecule includes Caspase (ICE), See, also International Patent Publication
Nos. WO98/17799 and WO99/43839, which are incorporated herein by reference in their
entirety for all purposes.
[0132] Suitable adjuvants used to enhance an immune response include, without limitation,
MPL™ (3-O-deacylated monophosphoryl lipid A; Corixa, Hamilton, MT), which is
described in U.S. Patent No. 4,912,094, which is hereby incorporated by reference for all
purposes. Also suitable for use as adjuvants are synthetic lipid A analogs or aminoalkyl
glucosamine phosphate compounds (AGP), or derivatives or analogs thereof, which are
available from Corixa (Hamilton, MT), and which are described in U.S. Patent No.
6,113,918, which is hereby incorporated by reference. One such AGP is 2-[(R)-3-
Tetradecanoyloxytetradecancylamino] ethyl 2-Deoxy-4-O-phosphono-3-O-[(S)-3-
te1radecanoyoxytetradecanoyl]-2-[3-tetradecanoyloxy-tetTadecanoyl-aminQ]-b-Dglycopyranoside,
which is known as 529 (also known as RC529; Corixa). This 529 adjuvant
is formulated as an aqueous form (529 AF) or as a stable emulsion (529 SE).
[0133] Still other adjuvants include mineral oil and water emulsions, calcium salts such as
calcium phosphate, aluminum salts (alum), such as aluminum hydroxide, aluminum
phosphate, etc., Amphigen, Avridine, L121/squalene, D-lactide-polylactide/glycoside,
pluronic acids, polyols, muramyl dipeptide, killed Bordetella, saponins, such as Stinralon™
QS-21 (Antigenics, Framingham, MA), described in U.S. Patent No. 5,057,540, which is
hereby incorporated by references, and particles generated therefrom such as ISCOMS
(irnmunostimulating complexes), Mycobacterium tuberculosis, bacterial lipopolysaccharides,
synthetic polynucleotides such as oligonucleotides containing a CpG motif (U.S. Patent No.
6,207,646, which is hereby incorporated by reference), a pertussis toxin (PT), or an E. coli
heat-labile toxin (LT), particularly LT-K63, LT-R72, PT-K9/G129; see, e.g., International
Patent Publication Nos. WO 93/13302 and WO 92/19265, which are/ incorporated herein by
reference for all purposes.
[0134] Also useful as adjuvants are cholera toxins and mutants thereof, including those
described in published International Patent Application No.WO 00/18434 (wherein the
glutamic acid at amino acid position 29 is replaced by another amino acid (other than aspartic
acid, preferably a histidine). Similar CT toxins or mutants are described in published
International Patent Application number WO 02/098368 (wherein the isoleucine at amino
acid position 16 is replaced by another amino acid, either alone or in combination with the
replacement of the serine at amino acid position 68 by another amino acid; and/or wherein
the valine at amino acid position 72 is replaced by another amino acid). Other CT toxins are
described in published International Patent Application number WO 02/098369 (wherein the
arginine at amino acid position 25 is replaced by another amino acid; and/or an amino acid is
inserted at amino acid position 49; and/or two ammo acids are inserted at amino acid position
35 and 3 6).
0135] It is to be understood that reference throughout this specification to any theory to
explain the results described is not to limit the scope of the invention. Independent of the
method by which the invention functions, the results and advantages described herein may be
achieved by reference to the following examples of the invention.
[0136] It will be apparent to one of ordinary skill hi the art that many changes and
modifications can be made thereto without departing from the spirit or scope of the appended
claims. All publications, patents and patent applications mentioned in this specification are
incorporated by reference in their entirety for all purposes to the same extent as if each
individual publication, patent or patent application was specifically and individually indicated
to be incorporated by reference.
EXAMPLE 1
Conjugation Of CRMm To Aft Peptide
[0137] Conjugation of haptens/antigenic peptides was carried out by reacting activated
carrier CRMig?, which has thirty-nine lysine residues, to a hapten/antigenic peptide having a
pendant thiol-group using the method described below (Figure 1). All the Ap peptides
contained a cysteine residue at the carboxy terminus to facilitate the conjugation of these
peptides through the cysteinyl sulfhydryl group to the carrier protein. These peptides were
produced by solid phase synthesis.
I. Activation
[0138] Free amino groups of CRMigy were bromoacteylated by reaction with an excess of
bromoacetic acid N-hydroxysuccinimide ester (Sigma Chemical Co., St. Louis, MO)
(Bematowicz and Matsueda, 1986). To an ice-cold solution of CRMm (-15 mg), 10% (v/v)
1.0 M NaHCOs (pH 8.4) was added. Bromoacetic acid N-hydroxysuccinimide ester, equal in
weight to that of CRMw used, was dissolved in 200 /iL dimethylformamide (DMF), added
slowly to the CRMigy, and gently mixed at room temperature in the dark for 1 hour. The
resulting bromoacetylated (activated) protein was purified by passage through a desalting
(P6-DG) column using PBS /1 mM EDTA (pH 7.0) as the eluent. Following purification,
the fractions corresponding to activated CRMw were pooled and the protein concentration
was estimated by BCA protein assay. The protein amino groups, both before and after
treatment with bromoacetic acid A^-hydroxysuccinimide ester, were reacted with 2,4,6-
trinitrobenzenesulfonic acid (TNBSA), which served as an indicator of bromoacetylatiou
(Means et al. ,1972).
n. Conjugation
[0139] Prior to conjugation, the peptides were reacted with 5,5'-dithio-bis(2-nitrobenzoic
acid) [Ellman's reagent] to verity the content of free-SH groups (between 62-88% reduced).
For the first four A# peptides (amino acids 1-7 without linker, amino acids 1-12 with GAGA
(SEQ ID NO.:10) linker, amino acids 1-9 with GAGA (SEQ ID NO.: 10) linker, and amino
acids 1-7 with GAGA (SEQ ID NO.: 10) linker), approximately 8.0 - 10.0 mg of peptide was
dissolved in sterile distilled water to an approximate concentration of 20 mg/ml. The peptide
was slowly added to cold activated CRM197 in a 1:1 ratio (w/w) and the pH was adjusted to
approximately 7.0-7.2 with the addition of 20-36 ^1 of 1 N NaOH. The resulting material was
gently mixed overnight at 4°C in the dark followed by dialysis in the dark against two 1L
changes of PBS, pH 7.2. For the next four A0 peptides (amino acids 1-5 without linker,
amino acids 1-9 without linker, amino acids 1-12 without linker, and amino acids 1-5 with
linker), reaction with Ellman's reagent was used to verify the free -SH groups. CRMm was
bromoacetylated, purified, and reacted with TNBSA as previously described. The pH of each
peptide was adjusted to 7.0 with the addition of 0.1' M NaPO4 (pH 8.5) at 2.2x the volume of
the dissolved peptide. The peptide was slowly added to cold activated inC Ra M1:119 7ratio
and allowed to react overnight at 4°C in the dark. The resulting material was dialyzed. A
final control peptide (l-12mer in reverse orientation) was conjugated to CRM as described
above with the following modification. Rather than adjusting the pH of the peptide to 7.0,
the pH of the activated CRMm was adjusted to approximately 7.5 with the addition of 20%
(v/v) 0.5 M NaPO4 (pH 8.0). Each conjugate, after dialysis, was transferred into a sterile
15mL polypropylene tube, wrapped in aluminum foil, and stored at 4°C. Activation of the
reactive amino residues on the carrier was then subsequently verified using mass
spectrometry.
Conjugate Immunogenic Peptide
Aßl-5-C-CRM197 ' DAEFR-C(SEQ.ID.NO,1)
Aßl-7-C-CRMm DAEFRHD-C (SEQ. ID N0.:2)
Aß-9-C-CRMJ97 DAEFRHDSG-C (SEQ ID NO:3)
Aß1-12-C-CRMm DAEFRHDSGYEV-C (SEQ ID NO:4)
A(ß5-L-C-CRMl97 DAEFR-GAGA-C (SEQ ID NO.:5)
A197l-7-L-C-CRMm DAEFRHD-GAGA-C (SEQ ID NO.:6)
Aß-9-L-C-CRMi97 DAEERHDSG-GAGA-C (SEQ ID NO. :7)
Aß1-12-L-C-CRM19, DAEFRHDSGYEV-GAGA-C (SEQ ED
NO.:8)
Aß12-l-C-CRM197 (-VE CONTROL) VEYGSDHRFEAD-C (SEQ ID NO.: 9)
D= linker (GAGA) (SEQ ID N0.:10)
EXAMPLE 2
Preparation of AB Peptide-CRM197Coriiugate and Purification. By Ultrafiltration
Bromoacetvlation of C R M 1 9 7 [ 0 1 4 0 ] CRM197(100 mg) in 0.01 M sodium phosphate buffer, 0.9% NaCl, pH 7.0, was
reacted with bromoacetic acid N hydroxysucinimide ester (dissolved to 20 mg/mL in DMSO)
at a. 1:1 weight ratio under an argon atmosphere. The reaction was titrated as needed to
maintain the pH at 7.0. The mixture was stirred in dark for 1.5 hours at room temperature.
The reaction mixture was 1.2um filtered into the retentate reservoir of a UF/DF system
(Millipore Labscale TFF, Billerica, MA). Purification was done using a 10K or 3 OK UF
membrane by diafiltration (30-fold) against 0.01 M sodium phosphate buffer / 0.9% NaCl, pH
7,0. The bromoacetylated CBMm was filtered by passing through a 0.2m filter. The
degree of bromoacetylation was determined by reacting the activated CRMm with cysteine,
followed by amino acid analysis and quantitation of the resulting carboxymethylcysteine
(CMC).
Cpniugation_of Aft Peptide and, Bromoacetylated CRMiy and Capping with
N-Acetylacvsteamine
[0141] Bromoacetylated CRM^ (50 mg) was transferred to a reaction vessel. To the
stirred solution, maintained at 2-8°C, was added 1 M sodium carbonate/bicarbonate. Titration
was performed to achieve a target pH of 9.0, under argon atmosphere. Separately, 50 mg of
A peptide was weighed out and dissolved in water for injection (WFI) to 20 mg/roL. To this
solution was added 1 M sodium carbonate/bicarbonate until pH 9.0 was attained. The peptide
solution was added to the bromoacetylated CRM solution, and the mixture was stirred at 2-
8°C for 14-18 hours. The remaining bromoaceryl groups were capped with a 20-fold molar
excess of N-acetylcysteamine for 3-6 hours at 2-8°C.
[0142] The reaction mixture was filtered through 1,2 filter into the retentate reservoir of
a UF/DF system (Millipore XL), and the conjugate was purified at room temperature by 30-
fold diafiltration on a 10K or 30KMWCO membrane (Millipore) by diafiltering against 0.01
M sodium phosphate buffer / 0.9% NaCl, pH 7.0, The retentate was collected and 0.2um
filtered and analyzed for protein content (Lowry or Micro-BCA colorimetric assay), by SDSPAGE,
by amino acid analysis, and for immunogenicity in mice.
EXAMPLES
Conversion by Capping of the Unreacted Brorrtoacetyl Groups to Aminoacetvl Groups
[0143] Bromoacetylated CRM197 (50 mg), prepared as described above in Example 2, was
transferred to a reaction vessel; To the stirred solution, maintained at 2-8°C, was added IM
sodium carbonate/bicarbonate. Titran'on was performed to achieve a target pH of 9.0, under
argon atmosphere. Separately, 50 mg of AP peptide was weighed out and dissolved hi WFI
to 20 mg/mL. To this solution was added 1 M sodium carbonate/bicarbonate until pH 9.0 was
attained. The peptide solution was added to the bromoacetylated CRM197solution, and the
mixture was stirred at 2-8°C for 14-18 hours. The remaining bromoacetyl groups were
capped using 8% ammonium bicarbonate solution for 4 hours at 2-8°C.
[0144] The reaction mixture was 1.2um filtered into the retentate reservoir of a UF/DF
system (Millipore XL), and the conjugate was purified at room temperature by 30-fold
diafiltration on a 10K or 30K. MWCO membrane by diafiltering vs 0.01 M sodium phosphate
buffer / 0.9% NaCl, pH 7.0. The retentate was collected and 0.2fim filtered and analyzed for
protein content (Lowry or Micro-BCA colorimetric assay), by SDS-PAGE, by amino acid
analysis, and for immunogenicity in mice.
EXAMPLE 4
Quantitative Determination of s-Cajboxymethvlcvsteine and ff-Carboxymethylcvsteamine as
Evaluation of Degree of Conjugation and Capping of Peptide jmrnunogen-
Protein/Polypeptide Conjugates
[0145] Acid hydrolysis of protein-peptide conjugates generated using bromoacetyl
activation chemistry resulted in the formation of acid stable S-carboxymethylcysteine (CMC)
from the cysteines at the conjugated sites and the formation of acid stable Scarboxymethylcysteamine
(CMCA) from the cysteamine at the capped sites (Figure 2). All of
the conjugated and capped lysines were converted back to lysine and detected as such. All
other amino acids were hydrolyzed back to free amino acids except for tryptophan and
cysteine, which were destroyed by the hydrolysis conditions. Asparagine and glutamine were
converted to aspartic acid and glutamic acid respectively.
[0146] Conjugate samples were diluted with deionized water to a total protein
concentration of less then 1 mg/mL. Two 10 microgram aliquots of each conjugate were
dried and resuspended in 100 |L of 6N HC1 [Pierce], 5 . L of melted phenol [Sigma-Aldrich],
and 1 fj.L of 2-mercaptoethanol [Sigma-Aldrich]. The samples were then incubated under
vacuum (100 mT) at 110 °C for 22 hours. The resulting hydrolysates were dried, resuspended
in 250 nL of Beckman Na-S sodium citrate sample dilution buffer (pH 2.2) [Beckman
Instruments, Inc., Fullerton, CA], and filtered using Whatman 0.2 um nylon syringe tip filters
and ImL syringes.
[0147] Each sample was then loaded into a Beckman 6300 amino acid analyzer sample
loop and placed in the analyzer. The amino acids of each hydrolyzed sample and control
were separated using ion exchange chromatography followed by reaction with Beckman
Ninhydrin NinRX solution at 135 °C. The derivatized amino acids were then detected in the
visible range at 570 nm and 440 run (see Table 1). A standard set of amino acids [Pierce
Amino Acid Standard H] containing 500 picomoles of each amino acid was run along with
the samples and controls for each set of analysis. S-carboxymethylcysteine [Sigma-Aldrich]
was added to the standard.
[0148] The areas of each standard peak were used as a quantitative equivalence for
(Table Removed)

proportional evaluation of each sample, Proline was determined from 440 nm. and was
converted to an equivalence in 570 nm using Glutamic acid, the closest amino acid.
[0149] Each of these picomols values was converted to a molar ratio of amino acid residues
using a comparison of picomoles of lysine to the theoretical lysme value present in the
protein. Lysine was chosen for this evaluation based on its covalent attachment to Cysteine
and Cysteamme and the expected similar hydrolysis. The resulting numbers of moles of
amino acids were then compared to the amino acid composition of the protein and reported
along with the values for CMC and CMCA. The CMC value was used directly for evaluation
of the degree of conjugation and the CMCA value was used directly for evaluation of the
degree of capping.
EXAMPLES
Characterization and Optimization of Ap-CRM Peptide Conjugates
[0150] To verify conjugation, all peptide-CRM conjugates were analyzed by amino acid
analysis and matrix-assisted laser desorption ionization-time of flight (MALDI-TOF)mass
spectrometry. For each conjugate, the moles of peptide conjugated to each mole CRMi97 was
determined by amino acid analysis (number of S-cafboxymethylcysteine residues) and
MALDI-TOF mass spectrometry. The values determined by each method were generally in
agreement.
I. Size exclusion cbromatography:
[0151] Batch concentrate samples were removed from storage and allowed to warm to
room temperature. The Aj3 peptide conjugate sample was gently mixed to insure a
homogeneous preparation. The A/3 peptide conjugate sample was spun in an Eppendorf
micro-centrifuge to remove any particulates. The supernatant was withdrawn for TosoHaas
TSK-Gel G3000SW chromatography (TosoHaas, Stuttgart, Germany). A TosoHaas TSKGel
G3000SW column was connected to a HPLC system and the pressure limit was set to 1.4
MPa. The column was equilibrated with at least 30 mL of PBS (10 mM sodium phosphate,
150 mM NaCl, pH 7.2 ± 0.1) at a flow rate of 0.75 mL/min. The A0 peptide conjugate
sample was loaded onto the TosoHaas TSK-Gel G3000SW column using the following
parameters:
Concentration of A|3 peptide conjugate sample: 1.5 ± 1.0 mg/mL
Flow rate: 0.75 mL/min
Sample Volume: 0.1 mL
RunTime: 30minutes
[0152) The absorbance was monitored at both 28 Onm and 21 Onm. For long term storage,
the TosoHaas TSK-Gel G3000SW column was equilibrated with at least 50 mL of 20%
ethanol at a flow rate of 0.5 — 1.0 mL/min.
n. PAGE rPolvacrvlamide Gel Electronhoresis'):
[0153] The activated (bromoacetylated) CRMig? and the A/3 peptide-CRMw conjugates
were examined by SDS-Gels using a NuPAGE Bis-Tris Electrophoresis (Novex, Frankfurt,
Germany) with a neutral pH, pre-cast polyacrylamide mini-gel system and NuPAGE MES
SDS Running Buffer. An 8ug aliquot of each activated CRM or conjugate was mixed with
reducing sample buffer and heated at 100°C for 5 minutes. The conjugates and molecular
weight (MW) standards (Invitrogen, Carlsbad, CA) were loaded on a 10% (w/v, acrylamide)
NuPage gel (Novex) based upon a Bis-Tris-HCl buffered system and run on MES SDS
Running Buffer-PAGE (Laemmli). Following SDS-PAGE, the gel was stained with Pierce
Gel Code Blue (Pierce, Rockford, IL). A/3 peptide-CRMig? conjugate was represented by a
major band around 66 kDa, above the band of native CRM and a dimer band around 120
kDa, along with minor multimer bands (data not shown).
HI. MALDI-TQF Mass Spectrometrv Analysis of Peptide-CRMig^ Conjugates:
[0154] Mass spectrometry was used for immediate approximation of the degree of
conjugation. Suitable aliquots of activated CRM197and conjugate samples were analyzed by
MALDI-TOF mass spectrometry using 3,5-dimethoxy-4-hydroxy-cinnamic acid (sinapinic
acid) as the matrix. The molecular weight of activated CRM197 determined by MALDI-TOF
mass spectrometry (Finnigan MAT Lasermat 2000 Mass Spectrometer, Ringoes, NY) was
found to be centered around 60.5kDa and for conjugates varied from 65kDa to 74kDa
depending on the degree of conjugation (data not shown). Up to 22 of the lysines (~50%) in
were found to be modified at 1:1 ratio.
IV. Optimization Experiments:
[0155] The degree of activation and conjugation are a function of reagent.-protein ratio,
temperature of the reaction and pH of the reaction buffer. Some examples are given below to
ustrate the optimal conjugation conditions carried out to identify the optimal pH conditions
in order to have reproducible process control parameters for conjugation reactions. Results
(Figure 3) showed that the conjugation reaction to Aß 5mer (DAEFRC)(SEQ ID NO:1) as
well as A/3 7mer (DAEFRHDC)(SEQ ID NO:2) is pH dependent and yields a higher degree
of modification/conjugation when the pH of the reaction condition is increased. Using the
TFA salt of 5mer and 7mer peptides, the degree of conjugation was evaluated at pH 9.0 with
varying amounts of peptide load (Figure 4). It is evident from these results that peptide
conjugates with a defined number of peptide copies per CRM molecule can be generated by
varying the peptide /activated CRM ratio during the conjugation process. Similar experiments
were done using acetate salt of AjS 7mer peptide.
[0156] For the A/31 -7/CRM conjugation, the capping process was evaluated by comparing
the moles of CMC A per CRM to the moles of CMC per CRM. Since the total of the CMC
and CMCA was constant for each peptide:CRM ratio tested, the capping process was
presumed to be complete (Figure 5). The total modification in the conjugate stayed between
19 and 21, comparable to the number of lysines bromoacetylated (Figure 5). These
experiments were done with TFA as the counterion for the peptide. The A/31 -7/CRM
conjugation was repeated using the acetate salt of the peptide rather than the TFA salt, and
these data are shown in Figure 5 and 6. The capping process appeared to go to completion,
with the total of the CMC and CMCA for each point staying between 20 and 22. The
conditions for the A0-CRM conjugation reaction have been optimized at pH 9.0, with the
degree of conjugation controlled by the peptide to CRM ratio in the reaction. By varying the
ratio from 0.1 to 1.5, the degree of conjugation can be varied (Figure 6).
[0157] The degree of activation and conjugation are a function of reagent:protein ratio,
temperature of the reaction and pH of the reaction buffer. The degree of modification
(conjugation) for each conjugate was calculated by subtracting the mass value of activated
CRM197 from the mass value of each conjugate and dividing by the mass of the peptide used
to prepare the conjugate. The degree of modification (conjugation) for all of the conjugates is
described in the Table 2.
[0158] The degree of conjugation was also compared to the values determined by the
estimated amount of S-carboxymethylcysteine residues formed per mole of CRM197(also
shown in Table 2).
(Table Removed)

EXAMPLE 6
Immunogenicity Studies of Aft Peptide Conjugates
[0159] Peptides spanning N-terminal residues 1-5,1-7,1-9, and 1-12 of Aß (with and
without the linker sequence GAGAC) and a peptide corresponding to the N-terminus of Aßn
reverse sequence from amino acid twelve to amino acid one (l-12mer in reverse sequence),
each conjugated to CRM197were used to immunize mice along with an unconjugated Aß1-
12 mer peptide in a formulation with STIMULON™ QS-21. Each group of mice was
immunized subcutaneously with a dose of either 30 /ug or 5g of one of the samples
formulated with 20 pig of the adjuvant STIMULON™ QS-21, at the beginning of the study
(week 0) and subsequently at weeks 3 and 6. The study protocol is illustrated in Table 3.
[0160] As shown in Table 3, peptides spanning N-terminal residues 1-5,1-7,1-9, and 1-12
of Aßwith and without the linker sequence GAGAC) and a peptide corresponding to the Ntenninus
of Aßin reverse sequence from amino acid twelve to amino acid one (l-12mer in
reverse) conjugated to CRM197 were used to immunize mice along with unconjugated Aß 1 -
12 mer peptide in a formulation with QS-21. Each group of mice was vaccinated
subcutaneously with a dose of either 30 (ig or 5 g of one of the samples formulated with 20
tg of the adjuvant QS-21, at the beginning of the study (week 0) and subsequently at weeks 3
and 6. Swiss Webster mice were used for the entire study with 5 mice in each group.
Injection volume = 100 /d; B = Bleed; V = vaccinate; E = exsanguinate.
[0161] Anti-Ap titers were measured by ELISA against Ap and CRM as described
below. Briefly, Costar. 96 well plates (#3591) were coated overnight at room temperature
with 2 g/mL Aß1-42 in sterile carbonate/bicarbonate buffer, pH 9.6. Plates were emptied
and blocked for two hours at room temperature with 200 well of 0.05% BSA in 1X
PBS/0.05% Tween 20, Blocked plates were emptied and washed with a plate washer
containing TBS, 0.1% Brij-35 (without azide) wash buffer. All primary antisera were serially
diluted with 0.05% BSA in IX PBS containing 0.05% Tween 20/0.02% Azide and 100 of
each dilution was then transferred to the appropriate plate wells and incubated at room
temperature for 2 hours. Plates were then emptied/washed as described above. Alkaline
phosphatase conjugated goat anti-mouse IgG secondary antibody from Southern Biotech
(city, state) was diluted 1:1000 with 0,05% BSA hi PBS containing 0.05% Tween 20/0.02%
Azide and 100 /iL was added to each well and incubated at room temperature for 1 hour.
Plates were then emptied/washed as described above and finally incubated at room
temperature for 1 hour with 100 well of a 1 mg/mL solution of p-nitrophenyl phosphate
substrate prepared in diethanolamine/MgCl2, pH 9.8. The color development was stopped
with the addition of 5 0 w e l l of 3 N NaOH. Plates were read at 405 nM with a 690 nM
reference. Endpoint titers were calculated at an O.D. of 0.1 AU.
(Table Removed)

CRM1o1ELISA
[0162] Greiner 96 well plates (#650011) were coated at 37°C for 90 minutes with 5.0
/ig/mL (100 ftl/well) of CRMig? in sterile carbonate/bicarbonate buffer, pH 9.6. Plates were
emptied and washed with a plate washer containing IX TBS, 0.1 % Brij-35 wash buffer. All
primary antisera were serially diluted with IX PBS containing 0.3% Tween 20/EDTA and
100 juL of each dilution was then transferred to the appropriate plate wells and incubated at
37°C for 1 hour. The plates were then emptied/washed as described above. Alkaline
phosphatase conjugated goat anti-mouse IgG secondary antibody from Southern Biotech was
diluted 1:1000 with IX PBS containing 0.05% Tween 20/0.02% Azide and 100 /*L was
added to each well and incubated at 37°C for 1 hour. Plates were then emptied/washed as
described above and finally incubated at room temperature for 1 hour with 100 /iL/well of a 1
mg/mL solution of p-nitrophenyl phosphate substrate prepared in diethanolamine/MgCl2, pH
9.8. The development was stopped with the addition of 50 ,uL/well of 3 N NaOH. Plates
were read at 405 nM with a 690 nM reference. Endpoint titers were calculated at an O.D. of
0.1 AU.
[0163] Tables 4-6 illustrate end point ELISA titers against Ap\ Following primary
immunization, all eight conjugates (excluding the negative control) induced measurable anti-
A( Ig immune responses. However, the 30ug dose, but not the 5ug dose, of AP gave a
positive response at week 3 following primary immunization. Among all the conjugates, it
appears that A/8 1-7 peptide conjugated without linker elicited as good as or better response
than other conjugates studied. At dose, A/? 1-5C did better at weeks 8-16. A/3 1-7C was
best at 30/zg dose. Analysis of antibody titers after second and third immunization with either
5 or 30ug dose indicate that the maximal immune response to A£5 for most of the conjugates
was seen after the second immunization. At least in mice, the third immunization did not
appear to enhance the immune response. A/? peptide however, needed three immunizations
with the 30/tg dose to reach maximal immune response against the peptide (Table 5). hi
terms of antibody decay over an extended period of time, the antibody level from the groups
immunized with conjugates was reduced by 2 to 3 fold as compared to the highest level
within that group. Individual samples from weeks 6 and 8 were analyzed to calculate GMTs
against A[3 for each of the group (Table 6) to see if any conjugate group was substantially
better than the others. Statistical analysis of week 6 titers from A/31-5C, A/3 1-7C and A/3 1-
9C conjugates indicated that the A/3 1-7 conjugate induced a significantly higher titer. It is
also evident from this experiment that the linker sequence GAGAC did not contribute to
enhancing the immune response to the peptide.
P. Weeks 0,3, 6, 8,13, and 16 ELISA endpoint titers against A@ using antiserum from 30 g dose of peptide conjugates spanning
varying lengths of the N-terminus of Amyloid A/3 peptide. Ref: Elan hyperimmune polyclonal #592 = 3,073,307. Endpoint at O.D. 0.1 AU.
Swiss Webster mice were immunized SC-N with 30 /jg of above antigens formulated with 20 /ig STMULON™ QS-21 at weeks 0,3, and 6.
(Table Removed)

T. Weeks 6 and 8 ELISA endpoint GMTs against A/3 using antisera
from 30 dose of peptide conjugates spanning varying lengths of the N-terminus of
Amyloid-A/3. Ref: Elan Hyperimmune Polyclonal #592 = 3,073,307. Endpoint at O.D. 0.1
AU. Swiss Webster mice were immunized SC-N with 30 /ig of above antigens formulated
with 20 fig STIMULON™ QS-21 at weeks 0, 3, and 6
a. Statistical analysis of week 6 titers from 1-5C, 1-7C, and 1-9C using Tukey-Kramer
show a statistical difference between 1-5C vs 1-7C only, whereas, analysis using Student's Ttest
shows a statistical difference between 1-5C vs 1-7C and 1-5C vs 1-9C.
b. Statistical analysis of week 8 titers from 1-5C, 1-7C, and 1-9C does not show a
statistical difference among the three groups. However, there appears to be a trend that may
indicate a difference between 1-5C vs 1-7C.
FDAPP Mouse Brain Tissue Staining
[0164] The PDAPP brain tissue staining assay provides an indication of the functionality of
the A peptide conjugates and/or A/31-42 antiserum. Serum samples from individual mouse
groups were separately analyzed for their ability to recognize PDAPP mouse brain tissue
plaques containing amyloid peptide. The results are shown in Table 7A and 7B. With the
exception of the A/3 5mer conjugate antisera, there was a dose-related response in recognizing
the plaques. Independent of the linker, 30ju,g conjugate-induced antisera had better reactivity
patterns as compared to that of 5/ig conjugate antisera. However, with the A/3 5mer
conjugate antisera, there seems be similar or better reactivity for the 5 pig group. Comparing
all these results, it is concluded that conjugates made from A)3 1-5 mer through A/31-9 mer
are sufficient in eliciting plaques recognizing immune response in mice and the presence of
linker is not essential. The following conclusions can be drawn from this study: (a) All of
the peptide conjugates induced high titered antiserum against the carrier protein CRM197 to
equal or slightly higher levels as compared to the unconjugated CRM197 control (not shown),
(b) The conjugates with the GAGAC linker did not enhance immunogenicity or functionality
compared to conjugates without the linker, (c) The immunogenicity data and PDAPP brain
tissue staining (an initial indication of functional antibody) show that the A/3 l-5mer and Aß
l-7mer conjugates appeared to be the preferred immunogens for further development.
Table 7A. PDAPP mouse brain tissue staining.
5 fig Dose
Without Linker
Vaccine
CRM/ A/3 1-5
CRM/AjSl-7
CRM/ A/? 1-9
CRM/ A/31-12
CRM/ A/3 12-
Imer
(Table Removed)

All anti serum diluted 1:1000 for staining procedure.
EXAMPLE 7
Immunogenicitv Studies in Monkeys
[0165] Groups of 6 monkeys received 30 ug of 7mer conjugate (total conjugate) adjuvanted
with either STMULON™ QS-21, alum or RC529 SB formulation at days 0, 29 and 58.
Additional groups included were 30 ug 5mer conjugate with either alum (A1(OH)3) or RC529
SE, 75 and 300/ig of Aß with STIMULON™ QS-21 as positive controls. Positive controls
were immunized every two weeks. At day 36 and 64 the anti-Aß antibody titers were
Alum and RC529 SE elicited GMT titers of 10110,13330 and 17090 respectively (Figure 7).
In contrast, Aß-42 plus STIMULON™ QS-21 elicited GMTs of 223 and 1734 at 75 and
300fig dose levels, respectively. The A/3 5mer conjugate elicited a titer of 2134 with alum
and 15980 with RC529 SE. On day 64, i.e. after 3 doses of conjugates with either
STIMULON™ QS21 or RC-529 SE induced substantially higher titers than post second dose
(GMTs 69910 for 7 mer/RC-529 SE; 21640 for A/3 5mer/RC-529 SE and 30310 for Aj3
7mer/STIMULON™ QS-21) (Figure 8). Conjugates with alum elicited reduced titers at post
third immunization compared to post second immunization. It appears that the Aß 7mer
conjugate elicited a better response as compared to the A/3 5mer conjugate. In monkeys,
adjuvanting Aß 7raer conjugate with RC-529 SE or STIMULON™ QS-21 elicited the
highest response (Figure 9).- The response to the A/3 7mer conjugate with alum was moderate
and similar to that of 300ug Aß 1-42 with STIMULON™ QS-21.
[0166] Several conclusions can be drawn from the current example. First, both conjugates
are very immunogenic in primate species. Second, the presence of adjuvants in the
immunization formulation significantly influences the immune response. Third, except for
the aluminum adjuvant, RC-529 SE and STIMULON™ QS-21 enhance the immune response
after each dose of immunization at least up to three doses (Figures 9). Overall, A/3 7mer
conjugate induced higher antibody response in the presence of 529, followed by
STIMULON™ QS-21 (see Figure 9).
EXAMPLES
Preparation of Multiple Antigenic Peptide (MAP) Conjugates and their
Immunogenicitv Study
[0167] Several methods are available for generating multiple antigem'c sites on the carriers.
In the previous examples, each antigenic site is separately conjugated to the carrier by
defined conjugation and capping chemistries. In this example, multiple antigenic sites are
constructed by solid phase synthesis of tandem repeats of Aß1 -7 mer. Alternatively these
tandem repeats can be coupled with T-cell epitopes with or without linking through a lysine
core as described elsewhere. These multiple antigenic peptides were synthesized with an
additional cysteinyl residue for conjugation to the carrier protein. Peptides containing one
repeat unit (1-7), three repeat units (1-7)3 and five repeat units (l-l)s with an additional
cysteinyl residue at the carboxyl end were synthesized. These peptides were covalently
attached to bromoacetylated CRM overnight through their C-terminal cysteine residues. The
reaction was carried out at pH 9.0-9.2 withpeptide:CRM ratios added as outlined in Table 8.
Bromoacetyl groups, which did not react with peptide, were capped with N-acetylcysteamine.
These lots represent conjugates containing one single copy, three tandem copies, and five
tandem copies of the Aßl-7 peptide conjugated to CRM, respectively. Table 8 briefly
outlines the properties of the samples.
(Table Removed)

[0169] Swiss-Webster mice (10 per group) were immunized subcutaneously with 1 or 0.1
ß Aß/CRM conjugated peptide. Half of the mice were immunized with the composition
formulated with 100 /tg of the adjuvant A1(OH)3, and half were immunized without adjuvant.
Immunizations were scheduled at weeks 0 and 3. Bleeds were scheduled for weeks 0,3, and
6, Serum samples were analyzed for antibody response against Aß1-42 mer peptide. The
results are shown in
(Table Removed)

[0170] All conjugates induced anti-A/3 1 -42 antibody titer after primary immunization and
the levels were substantially increased after the booster dose. In the absence of aluminum
adjuvant, the differences in dose response were evident both at week 3 and week 6 bleeds.
The higher dose elicited high-titered antibody response. Aluminum adjuvant elicited
substantially higher antibody response at week 3 at both dose levels (0.1 and 1 jug ) as
compared to the unadjuvanted groups. After secondary immunization, conjugates given at 1
ose elicited 5 to 10 fold increase in antibody levels. At this dose level peptide conjugates
with 3 and 5 repeats induced higher antibody response than a single repeat containing
conjugate. The titers against the CRM carrier were also determined, and these are listed in

(Table Removed)

Animals were immunized at weeks 0 and 3 and bled at weeks 0, 3, and 6. Adjuvant: 100 /tg
A1(OH)3 or none. ND=Not Determined.
[0171] Data in Table 11 indicates that the unadjuvanted groups induced very low levels of
anti-CRM antibody response at both 1/ig as well as 0.1/ig dose levels even after two
immunizations. However conjugates with aluminum hydroxide adjuvant induced substantial
levels of anti-CRM antibody response at 1/ig dose and much lower response at 0.1/ig dose.
In the presence of the adjuvant, CRM titers were highest for the single repeat conjugate,
intermediate for the triple repeat conjugate, and lowest for the quintuple repeat conjugate.
This is as expected, since the CRM dose per peptide dose is lowest for A (l-7)5/CRM, and
highest for A/3(l-7)i/CRM. The differences were only statistically significant at week 6 for
the 0. l/i dose.
[0172] The objective of the current invention is to elicit high titered immunogenic response
against the antigenic hapten and not necessarily against the carrier protein. Under certain

circumstances it is desirable to elicit optimal immune response against the hapten antigenic
determinant with least or no immune response against the carrier protein. For such
applications, conjugates with tandem repeats of multiple antigenic determinants with
unadjuvanted formulation will serve the need.
EXAMPLE 9
Preparation of Ap-Peptide Conjugates with Various Carrier Proteins and their
Irnmunogenicity
[0173] This example compares the immunogenicity of conjugates using six different carrier
proteins. The acetate salt of A/31-7 was added to bromoacetylated carriers in a 1:1 ratio by
weight at pH 9. All conjugates except Aß1-7/rC5ap were capped with N-acetylcysteamine.
All of the alternative carriers are recombinant bacterial proteins, including CRM (diphtheria
toxoid), recombinant C5a peptidase (rC5ap; cloned from Streptococcus agalactiae, includes
D130A and S512A mutations), ORFs 1224,1664,2452 (all cloned from Streptococcus
pyogenes), and T367, T858 (each cloned from Chlamydia pneumoniae). A summary of the
carriers used is found in Table 12. The degree of conjugation and capping of each A/3 1-7
conjugate to these carriers are presented in Table 13.
[0174] This study showed that the recombinant C5a peptidase conjugate induced higher
titers against Aßthan most of the other carriers tested, including CRM. This difference was
statistically significant for week 6 titers of groups that received aluminum hydroxide. In
addition, the Aß1-7/T858 conjugate was significantly more immunogenic than most other
conjugates in the absence of adjuvant. The only conjugate that performed poorly relative to
the CRM control conjugate was A/31-7/T367, a conjugate that also did not react with an A/3
specific monoclonal antibody by Western blot. This study confirms that numerous other
carriers can be successfully used to immunize against the A/3 peptide.
Conjugation results: Peptide load (the average number of Aß1-7 peptides per carrier) and
(Table Removed)


capping number are the numbers of unique amino acids (CMC or CMCA) per carrier as
determined by amiao acid analysis. The CMC and CMCA values were referenced to lysine.
Immunization Results
[0175] The geometric mean titer for each group in this study is listed in Table 14. At week
3, regardless of the presence of adjuvant, Aj31-7/rC5ap induced significantly higher anti-A|3
titers than the corresponding conjugates prepared with Streptococcus pyogenes ORFs 1224,
1664, 2452, or Chlamydiapneumoniae ORFs T367 and T858. At week 3 in the absence of
adjuvant, A/Jl-7/rC5ap was also more immunogenic than all other conjugates except AjSl-
7/T858. The T858 conjugate without A1(OH)3 induced higher liters than the ORF1224,
ORF1664, ORF2452, and CRM conjugates without adjuvant. The only conjugate that was
significantly less immunogenic than A/31-7/CRM was A/31-7/T367 (p carrier performed poorly with or without adjuvant at both weeks 3 and 6. At week 6, the
rCSap conjugate with aluminum hydroxide was more irnmunogenic (p other conjugates except Aj3 1-7/ORF2452. In the absence of adjuvant, both A01-7/rC5ap and
A31-7/T858 induced significantly higher titers than the ORF1224, ORF1664, or T367 .
conjugates. Aj31-7/CRM without aluminum hydroxide induced higher titers than either AjSl-
7/ORF1664 or A/31-7/T367.
275,202
(Table Removed)

Animals were immunized at weeks 0 and 3 and bled at weeks 0, 3, and 6. Dose is based on
the total amount of conjugate. Adjuvant: 100 fig A1(OH)3 or none.
EXAMPLE 10
Preparation of Additional A/3 Peptide-Protein Conjugates
I. Activation
[0176] Thawed CRMi97 (8 mL, 59.84 mg, at 7.48mg/mL) was dissolved in 0.1 M borate
buffer (pH 9, 3.968 mL) to bring the concentration to 5 mg/mL. The solution was cooled in
an ice bath to 0-5°C. Bromoacetic acid N-hydroxysuccinimide (59.9mg) (Aldrich-Sigma)
was dissolved in DMF (100 uL) (Aldrich-Sigma) and added dropwise, to the solution of
CRM197- Upon addition of the bromoacetic acid N-hydroxysuccinimide, a precipitate was
observed. When the pH was checked, it decreased to pH 6. The pH of the reaction mixture
was brought back to pH 9 by adding more 0.1 M borate buffer. Reaction mixture was then
stirred at 4°C for 1 hr, with gentle swirling. The mixture was purified and concentrated using
YM-10 centriprep centrifugal concentration and repurified on Sephadex G-25 using 10 mM
borate as the eluent. Fractions positive to Bradford Reagent were pooled and concentrated
using centriprep YM-10. The degree of bromoacetylation was determined by Bradford assay
(linear). The concentration was found to be 5.36 mg/mL (Yielded 30mg). The final
concentration was then adjusted to be 5 mg/mL and was stored in the freezer in 5% sucrose
until further use.
n. Conjugation
[0177] For each conjugation, thawed bromoacetylated CRMig? was used. Peptides were
dissolved in borate buffer (2.5mg in 125 ml of 0.1 M borate buffer). Slight insolubility was
observed with A/3 peptides KLVFFAEDC (SEQ ID NO:45), CLVFFAEDV (SEQ ID
N0:47), CKLVFFAED (SEQ ID NO:48), and LVFFAEDC (SEQ ID NO:50).
Bromoacetylated CRM197 (5mg/mL) was treated with the peptide solutions/suspensions. The
ratio of the peptide and protein in the mixture was 1:2. Turbidity was observed in the
conjugate mixtures with peptides KLVFFAEDC (SEQ ID NO.45), CLVFFAEDV (SEQ ID
N0:47), CKLVFFAED (SEQ ID N0:48), and KLVFFAEDC (SEQ ID NO:45). The
mixtures were then checked for pH (pH 9) and incubated at 4°C overnight with slow swirling.
Final concentrations of the mixtures were made to 3 mg/mL before incubation. The turbidity
of the conjugate mixtures with peptides CLVFFAEDV (SEQ ID NO:47) and LVFFAEDC
(SEQ ID NO:50) disappeared after incubation. However, KLVFFAEDC (SEQ ID NO:45)
and CKLVFFAED (SEQ ID N0:48) were still slightly turbid. Soluble mock protein
conjugate was also prepared with cysteamine at a ratio of 1: 1 (w/w). Synthesized peptides .
were obtained from BIOSOURCE with about 95% purity.
Detainers:
LVFFAEDVC (SEQ ID NO:44)
KLVFFAEDC (SEQ ID NO:45)
VFFAEDVGC (SEQ ID NO:43)
CLVFFAEDV (SEQ ID NO:47)
CKLVFFAED (SEQ ID NO:48)
CVFFAEDVG (SEQ ID NO:46)
Heptamers:
VFFAEDVC (SEQ ID NO:49)
LVFFAEDC (SEQ ID NO:50)
ffl. Capping Unreacted Lysine Groups on Protein:
[0178] The unreacted lysines were capped with N-acetylcysteamine (CMCA; Aldrich-Sigma)
at a ratio of 1/1 (w/w) for 4 hr at 4°C while swirling in the dark. The unieacted peptides and
capping reagents were removed from the conjugates by dialysis using Slide-A-Lyzer cassette
(Mw cut off 10,000) (Pierce) against PBS buffer (2 L) overnight (13 hr). Buffer exchange and
dialysis was done twice (2 x 14 hr). Slight insolubility was observed in the conjugates with
peptides KLVFFAEDC (SEQ ID NO:45)and CKLVFFAED (SEQ ID NO:48). All
conjugates were then stored in the refrigerator at 4°C in a perservative.
IV. Characterization of the Protein Carrier:
[0179] MALDI-TOF MS was used to determine the mass of bromoacetylated CRMig? and
the mass of the mock conjugate N-acetylcysteamine-CRMw.
Based on the masses of the CRM197 and bromoacetylated CRMuv, 11 lysine residues were
modified.
(59941.46-58590.29)7122 = 11
Where; Mw of CRMi97 is 58624.29
Mw of bromoacetylated CRM1i97 is 59941.46
Mw of bromoacetate is 122
[0180] The degree of bromoacetylation was more than 28%. (The total number of lysines in
CRMi97 was 39). From these 11 modified lysine residues, 10 were coupled with cysteamine.
The coupling efficiency was 90%.
(61143-59941)/119 = 10
Where; Mw of bromoacetylated CRMi97 is 59941.46
Mw of mock conjugate is 61143
Mw of the N-acetylcysteamine is 119
(10/1 l)x 100 = 90
V. Characterization of the Peptide-Protein Conjugates by SDS-PAGE Western Blot
Analysis with Tris-Tricine Precast Gel:
[0181] The protein-peptide conjugates were analyzed by Western blot. The lanes are: marker
(lane 1); L-28375 24/01 (lane 2); L-28375 24/02 (lane 3); L-28375 24/03 (lane 4); L-28375
24/04 (lane 5); L-28375 24/05 (lane 6); L-28375 24/06 (lane 7) L-28375 24/07 (lane 8); LPatent
28375 24/08 (lane 9); L-28375 24/09 (Mock) (lane 10); and, BrAcCRM^ (lane 11). A
peptide specific monoclonal antibody from mice (248 - 6H9 - 806 Aj8 17-28) was used as the
primary antibody (antisera) (1:3000 dilution was found to be the best). Goat-Anti mouse IgG
(H+L)-HPR was the secondary antibody (1:1000 dilution). It was observed that all the
conjugates were recognized by the primary antibody, except for the mock conjugate and the
activated CRM197 (See Figure 10.)
Protein Concentration
[0182] Protein concentrations of the conjugate samples were determined by the Pierce BCA
assay. (See Table 15.)
Arnino Acid Analysis
[0183] Amino acid analysis was carried out to determine the degree of conjugation. T degree
of conjugation was calculated based on the CMCA (carboxymethylcycteamine) residues
found in the conjugates. CMCA was used to cap the unreacted activated sites after
conjugation with the peptides. (See Table 15.)
(Table Removed)

[0184] All colorimetric assays were performed using microplate spectrophotometer and
SOFTmax Pro.
EXAMPLE 11
Immunogenic Studies of Aj3 Peptide Conjugates in Swiss Webster Mice
[0185] Outbred Swiss Webster mice were immunized with VFFAEDVG-C (SEQ ID NO:43),
LVFFAEDV-C (SEQ ID NO:44), KLVFFAED-C (SEQ ID N0:45), C-VFFAEDVG (SEQ
ID NO:46), C-LVFFAEDV (SEQ ID NO.47), C-KLVFFAED (SEQ ID NO:48), VFFAEDVC
(SEQ ID N0:49), LVFFAED-C (SEQ ID NO:50) each conjugated to CRM197 or with
Apl-7CRMi97, all formulated with the adjuvant RC 529 SB. Nine groups of 10 animals per
group were immunized subcutaneously with one of the Aft peptide conjugates at the
beginning of the study (week 0) and subsequently at week 4. Serum was collected prior to,
but on the same days as immunization.
Immunogenic Studies of Aß Peptide Conjugates in Inbred Balb/c Mice
[0186] Inbred Balb/c mice were immunized as in the preceding paragraph, but were also
boosted with conjugate and adjuvant at week 12.
Results
[0187] Sera from both studies are being collected for analysis of Apu-28 peptide-specific IgG
antibody titer. Sera from Balb/c mice are also collected for analysis one day prior to the
week 12 boost, and one week thereafter. Spleen cells from animals used in Example 11 are
evaluated for their potential to respond in-vitro to stimulation with an overlapping pool of
peptides spanning Aß1-42full length ACRMw, or polyclonal activators. Analysis is
comprised of Elispot readout for mterleukrns 4 and 5, and interferon-gamma. Upon
completion, the A/3 peptide conjugates are be evaluated as described above and as described
in Example 6.
EXAMPLE 12
Immunogenic Studies of A/? Peptide Conjugates in PSAPP Mice
[0188] PSAPP mice are immunized with VFFAEDVG-C (SEQ ID NO:43), LVFFAEDV-C
(SEQ ID N0:44), KLVPFAED-C (SEQ ID NO:45), C-VFFAEDVG (SEQ ID NO:46), CLVFFAEDV
(SEQ ID NO:47), C-KLWFAED (SEQ ID N0:48), VFFAEDV-C (SEQ ID
NO:49),LVFFAED-C(SEQIDNO:50), The PSAPP mouse, a doubly transgenic mouse
(PSAPP) overexpressing mutant APP and PS1 transgenes, is described in Holcomb, etal.
(1998) Nature Medicine 4:97-1 1 .
Immunogenic Studies of AB Peptide Conjugates in PDAPP Mice
[0189] PDAPP mice are immunized with VFFAEDVG-C (SEQ K> NO:43), LVFFAEDV-C
(SEQ ID N0:44), KLVFFAED-C (SEQ ID NO:45), C-VFFAEDVG (SEQ ID NO:46), CLVFFAEDV
(SEQ ID NO:47), C-KLVFFAED (SEQ ID N0:48), VFFAEDV-C (SEQ ID
NO:49), LVFFAED-C (SEQ ID NO:50) The PDAPP mouse expresses a mutant form of
human APP (APPV71F) and develops Alzheimer's disease at a young age (Bard, et al. (2000)
Nature Medicine 6:916-919; MasliahE, etal (1996) JNeurosci. 15;16(18):5795-811).
Results
[0190] Sera from both studies are collected for analysis of Apia^g peptide-specific IgG
antibody titer. Upon completion, the Aßpeptide conjugates will be evaluated as described
above and as described in Examples 6 and 1 1, as well as in the contextual fear conditioning
(CFC) assay.
[0191] Contextual fear conditioning is a common form of learning that is exceptionally
reliable and rapidly acquired in most animals, for example, mammals. Test animals learn to
fear a previously neutral stimulus and/or environment because of its association with an
aversive experience, (see, e.g., Fanselow, Anim. Learn. Behav. 18:264-270 (1990); Wehner
et al, Nature Genet. 17:331-334. (1997); Caldarone et al, Nature Genet. 17:335-337 (1997)).
[0192] Contextual fear conditioning is especially useful for determining cognitive function or
dysfunction, e.g., as a result of disease or a disorder, such as a neurodegenerative disease or
disorder, an Aß-related disease or disorder, an amyloidogenic disease or disorder, the
presence of an unfavorable genetic alteration effecting cognitive function (e.g., genetic
mutation, gene disruption, or undesired genotype), and/or the efficacy of an agent, e.g., an A/3
conjugate agent, on cognitive ability. Accordingly, the CFC assay provides a method for
independently testing and/or validating the therapeutic effect of agents for preventing or
treating a cognitive disease or disorder, and in particular, a disease or disorder affecting one
or more regions of the brains, e.g., the hippocampus, subiculum, cingulated cortex, prefrontal
cortex, perirhinal cortex, sensory cortex, and medial temporal lobe.
[0193] Typically, the CFC assay is performed using standard animal chambers and the
employment of conditioning training comprising a mild shock (e.g., 0.35mA foot shock)
paired with an auditory (e.g., a period of 85 db white noise), olfactory (e.g., almond or lemon
extract), touch (e.g., floor cage texture), and/or visual cue (light flash). The response to the
aversive experience (shock) is typically one of freezing (absence of movement except for
respiration) but may also include eye blink, or change in the nictitating membrane reflex,
depending on the test animal selected. The aversive response is usually characterized on the
first day of training to determine a baseline for unconditioned fear, with aversive response
results on subsequent test days, e.g., freezing in presence of the context and/or cue but in the
absence of the aversive experience, being characterized as context and cue conditioned fear,
respectively. For improved reliability, test animals are typically tested separately by
independent technicians and scored over tune. Additional experimental design details can be
found in the art, for example, in Crawley, JN, What's Wrong with my Mouse; Behavioral
Phenotyping ofTransgenic and Knockout Mice, Wiley-Liss, NY (2000).
[0194] Exemplary test animals (e.g., model animals) include mammals (e.g. rodents or nonhuman
primates) that exhibit prominent symptoms or pathology that is characteristic of an
amyloidogenic disorder such as Alzheimer's. Model animals may be created by selective
inbreeding for a desired or they may genetically engineered using transgenic techniques that
are well-known in the art, such that a targeted genetic alteration (e.g. a genetic mutation, gene
disruption) in a gene that is associated with the dementia disorder, leading to aberrant
expression or function of the targeted gene. For example, several transgenic mouse strains
are available that overexpress APP and develop amyloid plaque pathology and/or develop
cognitive deficits that are characteristic of Alzheimer's disease (see for example, Games et
al, supra, Johnson-Wood et al, Proc. Natl. Acad. Sci. USA 94:1550 (1997); MasJiah E and
Rockenstein E. (2000) J'Neural Transm Suppl.;59:175-83).
[0195] Alternatively, the model animal can be created using chemical compounds (e.g.
neurotoxins, anesthetics) or surgical techniques (e.g. stereotactic ablation, axotomization,
transection, aspiration) that ablate or otherwise interfere with the normal function of an
anatomical brain region (e.g. hippocampus, amygdala, perirhinal cortex, medial septal
nucleus, locus coeruleus, mammalary bodies) or specific neurons (e.g. serotonergic,
cholinergic, or dopaminergic neurons) that are associated with characteristic symptoms or
pathology of the amyloidogenic disorder, hi certain preferred embodiments, the animal
model exhibits a prominent cognitive deficit associated with learning or memory in addition
to the neurodegenerative pathology that associated with a amyloidogenic disorder. More
preferably, the cognitive deficit progressively worsens with increasing age, such that the
disease progression in the model animal parallels the disease progression in a subject
suffering from the amyloidogenic disorder.
[0196] Contextual fear conditioning and other in vivo assays to test the functionality of the
conjugates described herein may be performed using wild-type mice or mice having a certain
genetic alteration leading to impaired memory or mouse models of neurodegenerative
disease, e.g., Alzheimer's disease, including mouse models which display elevated levels of
soluble Aßin the cerebrospinal fluid (CSF) or plasma. For example, animal models for
Alzheimer's disease include transgenic mice that overexpress the "Swedish" mutation of
human amyloid precursor protein (hAPPswe; Tg2576) which show age-dependent memory
deficits and plaques (Hsiao et al. (1996) Science 274:99-102). The in vivo functionality of
the conjugates described herein can also be tested using the PS-1 mutant mouse, described in
Duff, et al. (1996) Nature 383,710-713. Other genetically altered transgenic models of
Alzheimer's disease are described in Masliah E and Rockenstein E. (2000) J Neural Transm
Suppl. 59:175-83.
[0197] In various aspects, the methods of the invention comprise the administration of an A/3
conjugate that is capable of improving cognition in a subject wherein the Aßconjugate has
been identified in using an assay which is suitably predictive of immunotherapeutic efficacy
in the subject. In exemplary embodiments, the assay is a model animal assay that is based, at
least in part, on comparing cognition, as determined from a contextual fear conditioning
study, of an animal after administration of a test immunological reagent to the animal, as
compared to a suitable control. The CFC assay evaluates changes in cognition of an animal
(typically a mouse or rat) upon treatment with a potential therapeutic compound, m certain
embodiments, the change in cognition evaluated is an improvement in memory impairment
status or a reversal of memory deficit. Accordingly, the CFC assay provides a direct method
for determining the therapeutic effect of agents for preventing or treating cognitive disease,
and in particular, a disease or disorder affecting one or more regions of the brains, e.g., the
hippocampus, subiculum, cingulated cortex, prefrontal cortex, perirhinal cortex, sensory
cortex, and medial temporal lobe. Such CFC assays are discussed in copending U.S. Patent
Application Serial No. 60/XXX.XXX entitled "Contextual Fear Conditioning for Predicting
Immunotherapeutic Efficacy" (bearing Attorney Docket No. ELN-058-1), filed on December
15,2004, and U.S. Patent Application Serial No. 60/XXX,XXX entitled "Contextual Fear
Conditioning for Predicting Immunotherapeutic Efficacy" (bearing Attorney Docket No.
ELN-058-2) the entire contents of which are hereby incorporated by reference.
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WE CLAIM:
1. An immunogenic conjugate comprising a peptide immunogen covalently attached to a carrier
protein, wherein the immunogenic conjugate has the formula:
(Formula Removed)
wherein,
C is a carrier protein selected from the group consisting of CRM197, Streptococcus pyogenes ORF1224, Streptococcus pyogenes ORF1664, Streptococcus pyogenes ORF2452, and Chlamydia pneumoniae ORF T858,
Xd is a derivatized functional group of an amino acid residue of the carrier protein,
P is a peptide immunogen comprising an Aß fragment covalently attached to the derivatized functional group of the amino acid residue of the carrier protein
R is a capping molecule covalently attached to the derivatized functional group of an amino acid residue of the carrier protein, whereby the functionality of the carrier protein is preserved, such that it retains its ability to elicit the desired immune responses against the peptide immunogen that would otherwise not occur without a carrier,
n is an integer greater than 0, but less than or equal to 38, and
p is an integer greater than 0, but less than or equal to 38.
2. The immunogenic conjugate as claimed in claim 1, wherein the carrier protein is CRM197.
3. The immunogenic conjugate as claimed in claim 1 or claim 2, wherein the Aß fragment is selected from the group consisting of residues 1-3, 1-4, 1-5, 1-6, 1-7, 1-9, 1-10, 1-11, 1-12, 1-16, 1-28 3-6,3-7,13-28,15-24,16-22, 16-23,17-23, 17-24, 18-24,18-25,17-28,25-35, 33-42,35-40, and 35-42 of Ap (SEQ ID NO:21).
4. The immunogenic conjugate as claimed in any one of claims 1 to 3, wherein the peptide
immunogen further comprises a terminal cysteine residue and the peptide immunogen is
covalently attached to the derivatized functional group of the amino acid residue of the carrier
protein via the terminal cysteine residue.
5. The immunogenic conjugate as claimed in claim 4, wherein the terminal cysteine residue is located at the carboxy-terminus of the Ap fragment.
6. The immunogenic conjugate as claimed in claim 4, wherein the terminal cysteine residue is located at the amino-terminus of the Aß fragment.
7. The immunogenic conjugate as claimed in any one of claims 1 to 6, wherein the Aß fragment is residues 1-7 of Aß (SEQ ID NO:21).
8. The immunogenic conjugate as claimed in any one of claims 1 to 6, wherein the Aß fragment is residues 16-23 of Aß (SEQ ID NO:21).

9. The immunogenic conjugate as claimed in any one of claims 1 to 8, wherein the capping molecule is selected from the group consisting of an amino group, a hydroxyl group, a cysteamino group, an N-acetylcysteamino group, and an ethanolamino group.
10. The immunogenic conjugate as claimed in claim 9, wherein the capping molecule is an N-acetylcysteamino group.
11. The immunogenic conjugate as claimed in claim 1 having the formula:
(Formula Removed)
wherein,
C is CRM197,
Xd is a derivatized lysine residue of CRM197,
P is a peptide immunogen comprising residues 1-7 of Aß (SEQ ID NO:21) and a carboxy-terminal cysteine residue, wherein the peptide immunogen is covalently attached to the derivatized lysine residue via the carboxy-terminal cysteine residue,
R is a capping molecule comprising N-acetylcysteamino covalently attached to the derivatized lysine residue of CRM197, whereby the functionality of the carrier protein is preserved such that
it retains its ability to elicit a desired immune response against the peptide immunogen that
would otherwise not occur without a carrier,
n is an integer greater than 0, but less than or equal to 38, and
p is an integer greater than 0, but less than or equal to 38.
12.The immunogenic conjugate as claimed in claim 11, wherein n is 12.
13. The immunogenic conjugate as claimed in claim 11, wherein n is 14.
14. The immunogenic conjugate as claimed in claim 11, wherein the peptide immunogen is
DAEFRHD-C (SEQ ID NO:2).
15. The immunogenic conjugate as claimed in claim 11 having the formula:
(Formula Removed)
wherein,
n is an integer greater than 0, but less than or equal to 38, and
p is an integer greater than 0, but less than or equal to 38.
16. The immunogenic conjugate as claimed in claim 15, wherein n is 12,14 or 15.
17. The immunogenic conjugate as claimed in claim 1 having the formula:
(Formula Removed)
wherein,
C is CRM197,
Xd is a derivatized lysine residue of CRM197,
P is a peptide immunogen comprising residues 16-23 of Aß (SEQ ID NO:21) and a carboxy-terminal cysteine residue, wherein the peptide immunogen is covalently attached to the derivatized lysine residue via the carboxy-terminal cysteine residue,
R is a capping molecule comprising N-acetylcysteamino covalently attached to the derivatized lysine residue of CRM197, whereby the functionality of the carrier protein is preserved such that it retains its ability to elicit a desired immune response against the peptide immunogen that would otherwise not occur without a carrier,
n is an integer greater than 0, but less than or equal to 38, and
p is an integer greater than 0, but less than or equal to 38.
18. The immunogenic conjugate as claimed in claim 17, wherein the peptide immunogen is KLVFFAED-C (SEQ ID NO:45).
19.The immunogenic conjugate as claimed in claim 17 having the formula:
(Formula Removed)
wherein,
n is an integer greater than 0, but less than or equal to 38, and
p is an integer greater than 0, but less than or equal to 38.
20. The immunogenic conjugate as claimed in any one of claims 1 to 11, 14, 15 or 17 to 19, wherein n is an integer greater than or equal to 5, but less than or equal to 25.
21. The immunogenic conjugate as claimed in claim 20, wherein n is an integer greater than or equal to 12, but less than or equal to 20.
22. The immunogenic conjugate as claimed in any one of claims 15, 16 or 19, wherein n plus p equals from 20 to 22.
23. An immunogenic composition, comprising an immunogenic conjugate as claimed in of any one of claims 1 to 22, together with one or more pharmaceutically acceptable adjuvants, wherein the ratio of immunogenic conjugate to adjuvant is from 1:20 to 3:2 by weight.
24. The immunogenic composition as claimed in claim 23, wherein one or more adjuvants are selected from the group consisting of GM-CSF, 529 SE, IL-12, aluminum phosphate, aluminum hydroxide, Mycobacterium tuberculosis, Bordetella pertussis, bacterial lipopolysaccharides, aminoalkyl glucosamine phosphate compounds, MPL™ (3-O-deacylated monophosphoryl lipid A), a polypeptide, Quil A, STIMULON™ QS-21, a pertussis toxin (PT), an E. coli heat-labile toxin (LT), IL-1 α, IL-1 ß, IL-2, IL-4, IL-5, IL-6, IL-7, IL-8, IL-10, IL-13, IL-14, IL-15, IL-16, IL-17, IL-18, interferon- a, interferon- p, interferon-y, G-CSF, TNF- a and TNF-ß

Documents:

3396-DELNP-2006-Abstract-(16-09-2011).pdf

3396-delnp-2006-abstract.pdf

3396-delnp-2006-assignment (08-06-2007).pdf

3396-DELNP-2006-Claims-(16-09-2011).pdf

3396-delnp-2006-claims.pdf

3396-delnp-2006-Correspondance Others-(17-04-2013).pdf

3396-DELNP-2006-Correspondence Others-(16-09-2011).pdf

3396-delnp-2006-Correspondence Others-(17-07-2012).pdf

3396-delnp-2006-correspondence-others (03-07-2007).pdf

3396-delnp-2006-correspondence-others (08-06-2007).pdf

3396-delnp-2006-correspondence-others (30-03-2010).pdf

3396-delnp-2006-Correspondence-Others-(15-03-2013).pdf

3396-DELNP-2006-Correspondence-Others-(28-01-2011).pdf

3396-DELNP-2006-Correspondence-Others-(30-03-2010).pdf

3396-delnp-2006-correspondence-others-1.pdf

3396-delnp-2006-correspondence-others.pdf

3396-DELNP-2006-Description (Complete)-(16-09-2011).pdf

3396-delnp-2006-description(complete).pdf

3396-DELNP-2006-Drawings-(16-09-2011).pdf

3396-delnp-2006-drawings.pdf

3396-DELNP-2006-Form-1-(16-09-2011).pdf

3396-delnp-2006-form-1.pdf

3396-delnp-2006-form-18.pdf

3396-DELNP-2006-Form-2-(16-09-2011).pdf

3396-delnp-2006-Form-2-(17-04-2013).pdf

3396-delnp-2006-form-2.pdf

3396-delnp-2006-Form-3-(15-03-2013).pdf

3396-DELNP-2006-Form-3-(16-09-2011).pdf

3396-delnp-2006-Form-3-(17-07-2012).pdf

3396-delnp-2006-form-3.pdf

3396-delnp-2006-Form-5-(17-04-2013).pdf

3396-delnp-2006-form-5.pdf

3396-delnp-2006-form-6 (08-06-2007)..pdf

3396-delnp-2006-form-6 (08-06-2007).pdf

3396-delnp-2006-form-6 (30-03-2010).pdf

3396-delnp-2006-gpa (08-06-2007)..pdf

3396-DELNP-2006-GPA-(16-09-2011).pdf

3396-delnp-2006-GPA-(17-04-2013).pdf

3396-DELNP-2006-GPA-(28-01-2011).pdf

3396-delnp-2006-pct-210.pdf

3396-delnp-2006-pct-220.pdf

3396-delnp-2006-pct-304.pdf

3396-DELNP-2006-Petition-137-(16-09-2011).pdf

3396-delnp-2006-petition-138.pdf


Patent Number 257461
Indian Patent Application Number 3396/DELNP/2006
PG Journal Number 41/2013
Publication Date 11-Oct-2013
Grant Date 04-Oct-2013
Date of Filing 13-Jun-2006
Name of Patentee JANSSEN ALZHEIMER IMMUNOTHERAPY
Applicant Address 2nd FLOOR, TREASURY BUILDING, LOWER GRAND CANAL STREET, DUBLIN 2, IRELAND
Inventors:
# Inventor's Name Inventor's Address
1 RASAPPA G. ARUMUGHAM 102 BARTON LANE, CHAPEL HILL, NC 27516, USA,
2 KRISHNA A. PRASAD 105 WORSHAM DRIVE, CHAPEL HILL, NC 27516, USA,
PCT International Classification Number C07K
PCT International Application Number PCT/US2004/044093
PCT International Filing date 2004-12-17
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/530,481 2003-12-17 U.S.A.