Title of Invention

INTERMEDIATES AND A METHOD OF SYNTHESIS OF POLYETHYLENE GLYCOL ALDEHYDE

Abstract The present invention relates to intermediates and a method of synthesis of polyethylene glycol aldehyde.
Full Text

The present invention relates to polyethylene glycol aldehydes, and to related methods of making and using such derivatives, such as in the pegylation of polypeptides and other biomolecules.
Polyethylene glycol ("PEG") is a linear or branched, neutral polyether, available in a variety of molecular weights* - The structure of PEG is HO-(CH2-CH2-O)rrH, where n indicates the number of repeats of the ethylene oxide unit in the PEG.
PEG and PEG derivatives have been employed to modify a variety of biomolecules. When attached to such molecules, PEG increases their solubility and increases their size, but has little effect on desirable properties. Advantageously, PEG conjugated biomolecules may exhibit increased retention and delayed metabolism in the body.
A variety of PEG derivatives has been developed for such applications. Such PEG derivatives are described, for example, in U.S. Patent 5,252,714; U.S. Patent 5,672,662; U.S. Patent 5,959,265; U.S. Patent 5,990,237; and U.S. Patent 6,340,742.

Two general approaches have been used for the functionalization of PEG: (1) changing the terminal hydroxyl group, through, a series of reactions, to a more active functional group and/or (2) reaction of the PEG under controlled conditions with difunctional compounds so that one of its functional groups reacts with the PEG polymer and the other remains active. In most cases, several steps must be conducted to achieve the desired PEG derivatives. The desired PEG derivatives are often produced in low yields and require a complicated purification process to isolate. In addition, PEG derivatives may show nonspecific binding to the biomolecules of interest, which can result in multiple PEGs attached to a single biomolecule and/or PEG attachment at the active site. Multiple PEG attachments may cause difficulty in purification of the pegylated biomolecule. Multiple PEG attachments, and/or pegylation at the active site, can also lead to decreased activity of the biomolecule.
It would, therefore, be advantageous to provide improved PEG derivatives suitable for conjugation with a variety of other molecules, including polypeptides and other biomolecules containing an a-amino gjoup. There remains a need to provide PEG derivatives that can be produced in high yield and purity, and that can be conjugated to provide biomolecules having improved performance characteristics.
These and other objects of the present invention are described in greater detail below.









with other chemical moieties. The terminal aldehyde group of the above formula permits ready covalent attachment to a chemical moiety of interest, for example, to the a-amino group of a polypeptide. The Ri capping group is selected to permit or prevent bifunctionality, e.g., covaient attachment to a second chemical moiety of interest.
In the case that the capping group is generally unreactive with other chemical moieties Ri is relatively inert. If Fh is relatively inert, then the structure of the resulting polyethylene glycol aldehyde is monofunctional and therefore covalently bonds with only one chemical moiety of interest. Suitable generally unreactive . FU capping, groups include: hydrogen, hydroxyl, lower alkyl, lower alkoxy, lower cycloalkyl, lower alkenyl, lower cycloalkenyl, aryl, and heteroaryl.
As used herein, the term "lower alkyl", means a substituted or unsubstituted, straight-chain or branched-chain alky! group containing from 1 to 7, preferably from 1 to 4, carbon atoms, such as methyl, ethyl, n-propyl, isopropyl, n-butyl, sec.butyl, tert.butyl, n-pentyl, n-hexyl, n-heptyl and the like.
The term "lower alkoxy" means a lower alkyl group as defined earlier which is bonded via an oxygen atom, with examples of lower alkoxy groups being methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, sec.butoxy, tertbutoxy, n-pentoxy and the like.
The term "lower cycloaikyl" means a substituted or unsubstituted cycloalkyl group containing from 3 to 7, preferably from 4 to 6, carbon atoms, i.e. cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl.

As used herein, the term "lower alkenyl" means a substituted or unsubstituted, straight-chain or branched-chain alkenyl group containing from 2 to 7, preferably from 2 to 5, carbon atoms, e.g., ethenyi, butenyl, pentenyl, hexenyl and the like.
The term "lower cycloalkenyi" means a substituted or unsubstituted, cycloalkenyi group containing from 4 to 7 carbon atoms, e.g., cyciobutenyl, cyclopentenyl, cyclohexenyl and the like.
The term "aryl" means a phenyl or naphthyl group which is unsubstituted or optionally mono- or multiply-substituted by halogen, lower alkyl, lower alkoxy, trifluoromethyl, hydroxyl, carboxylic acid, carboxylic ester, nitro, amino, or phenyl, particularly by halogen, lower alkyl, lower alkoxy, trifluoromethyl, hydroxyl, nitro, amino and phenyl.
The term "heteroaryl" means a 5- or 6-membered heteroaromatic group which contains one or more hetero atoms selected from N, S, and O.
Preferred generally unreactive Ri capping groups include methoxy, hydroxyl, or benzyloxy. An especially preferred R-j capping group is methoxy. When R1 is methoxy the aldehydes and related compounds are sometimes referred to herein as "mPEG" compounds, wherein the "m" stands for methoxy.
If the R-j capping group is generally reactive with other chemical moieties, then Ri is a functional group capable of reacting with some other functional group, such as an amine and/or sulfhydryl in a peptide and/or protein, in such a

case, R-i may be a functional group that is capable of reacting readily with electrophiiic or nucieophilic groups on other molecules, in contrast to those groups that require strong catalysts or highly impractical reaction conditions in order to react. If Ri is relatively reactive, the polyethylene glycol aldehyde is bifunctionai and may therefore covalently bond with two chemical moieties.
Examples of suitable generally reactive R-i capping groups include: halogen, epoxide, maleimide, orthopyridyl disulfide, tosylate, isocyanate, hydrazine hydrate, cyanuric halide, N-succinimidyloxy, sulfo-N-succinimidyloxy, 1-benzotriazolyloxy, 1-imidazolyloxy, p-nitrophenyloxy, and

polyethylene glycol aldehyde with aldehyde groups on both ends of the polyethylene glycol aldehyde. And accordingly, the resultant polyethylene glycol aldehyde exhibits binding properties on both ends. It will be appreciated, however, that these bifunctionai compounds need not be perfectly symmetrical, and that the first m, n, and/or p may be the same or different from the second m, n, and/or p in the formula. It is preferred, however, that the compound be

symmetrical, meaning that both depicted m's have the same value, both nJs have the same value, and both p's have the same value.
In the compounds of the present invention X is O or NH. Preferably, X is O. Further, Y is selected from the group consisting of

wherein Z is a side chain of an amino acid.
In the present invention, m is from 1 to 17. In a preferred embodiment, m is from 1 to 14. More preferably m is from 1 to 7, and even more preferably, m is from 1 to 4. Most preferably, m is 1.
In the case of a Y group with the general structure:

the Y group exhibits a linkage to the amino acid through a peptide bond. Accordingly, this general structure results in specific structures as simple as:


when a single giycine is used as the amino acid. When Z is CH3, ihen the amino acid is alanine. If Z is CH2OH5 the amino acid is serine.
Obviously, more complex structures are possible when more and different amino acids are utilized, as can be appreciated from an examination of the various amino acid structures shown below. Preferably, only one amino acid is used.










The compounds of the present invention may be produced by any suitable method, using known reagents and methods. However, the present invention provides a specific method of making a polyethylene glycol aldehyde comprising hydroiyzing a compound of formula (IX):

to produce a polyethylene glycol aldehyde of formula (I):

wherein R1( X, Y, Z, m, n, and p are defined as above. Preferably, the hydrolysis is acid catalyzed. Suitable catalytic acids include: trifluoroacetic acid, hydrochloric acid, phosphoric acid, sulfuric acid, and nitric acid. Preferably, the acid is trifluoroacetic acid.
In preferred embodiments, p is 3, Ri is methoxy, m is 1, and n is from 100 to 750; or p is 2, Ri is methoxy, m is 1, and n is from 100 to 750; or p is 1, Ri is methoxy, m is 1, and n is from 100 to 750.
The polyethylene glycol aldehyde compounds of formula (II) may also be produced by any suitable method. By way of example, however, polyethylene glycol aldehydes of formula (II) may be produced as follows: First, the polyethylene glycol is dried. Second, the polyethylene glycol is reacted with a halogenated derivative of acetic acid. Hydroiyzing the resulting reaction mixture results in a PEG carboxylic acid. Alternatively, the product PEG carboxylic acid may also be derived from direct oxidation of the PEG, after the drying step. Next,

the PEG carboxylic acid is then treated with an amine derivative of diethyl acetal to produce a PEG acetal amine, which is reacted with a haiogenated carboxylic acid to produce a polyethylene glycol aldehyde of formula. The polyethylene glycol aldehyde product is then collected and purified.
The polyethylene glycol aldehyde product may be collected and purified in any suitable manner. By way of example, the polyethylene giycol aldehyde product may be extracted with dichloromethane. The organic layer is dried over sodium sulfate, filtered, concentrated, and precipitated with diethyl ether. The product, PEG aldehyde, is collected by filtration and dried under vacuum.
The present invention thus provides a method of making a polyethylene glycol aldehyde comprising hydrolyzing a compound of formula (X):




bromoacetate, ethyl bromoacetate, t-butyl chloroacetate, methyl chloroacetate, or ethyl chloroacetate in the presence of potassium t-butoxide, an alkali metal hydride such as sodium hydride or potassium naphtalide. Preferably, the compound of formula (XVI) is t-butyl bromoacetate.
In preferred embodiments, p is 3, Ri is methoxy, rri is 1, and n is from 100 to 750; or p is 2, R-j is methoxy, m is 1, and n is from 100 to 750; or p is 1, Ri is methoxy, m is 1, and n is from 100 to 750.
Compounds of formulas (III) - (VI) (also identified as Groups B-E, respectively) may likewise be made by any suitable means. By way of example, however, the following reaction schemes may be used to produce compounds of formulas (III) - (VI) (Groups B-E).





Biomolecules pegylated with PEG aldehydes of the present invention show reproducibility in the number and location of PEG attachment, resulting in a purification strategy that is less complicated. This site-specific pegylation can result in a conjugate where the pegylation site is far from the site where the biomoiecule or the peptide binds to the cell's receptors, which will allow pegylated biomolecules, proteins, or peptides to retain much or all of their biological activity. The PEG-aldehydes of the present invention can react with any biomolecules that contain an alpha (a) amino group.
Depending on the polyethylene glycol aldehyde selected the polyethylene glycol may be covalently bonded to a biomoiecule at one end (monofunctional polyethylene glycol aldehyde) or at both ends (bifunctional polyethylene glycol aldehyde).
As stated, the polyethylene glycol aldehydes of the present invention may be used for N-terminus site-specific pegylation. The site-specific N-terminal linkage results in pegylated polypeptides which avoid cross-linking and multiple derivatizations of a single polypeptide. To produce this site-specific covalent linkage, any suitable reaction conditions may be used. Generally, the pH of the reaction mixture is sufficiently acidic to activate the a-amino acid of the polypeptide to be pegylated. Typically, the pH is about 5.5 to about 7.4, preferably about 6.5.
Accordingly, a method for attaching a polyethylene glycol molecule to a polypeptide comprising:

reacting at least one polypeptide of formula (XXII):
NH2B (XXII); with a polyethylene glycol aldehyde molecule of formula (I):
Rr(CH2CH2OVCH2CH2-X-Y-NH-(CH2)p-CHO([) wherein Ri,X, Y, Z, m, n, and p are defined as above; to produce a compound of formula (XXIII):
Rr(CH2CH2O)n-CH2CHrX-Y-NH-(CH2)p-NHB (XXIII)
wherein the polyethylene glycol aldehyde molecule is bonded to the N-terminai amino group of the polypeptide is provided.
In preferred embodiments, p is 3, Ri is methoxy, m is 1, and n is from 100 to 750; or p is 2, Ri is methoxy, m is 1, and n is from 100 to 750; or p is 1, Ri is methoxy, m is 1, and n is from 100 to 750.
The compounds of formula (XXII) may be any polypeptide, including interferon-alpha, interferon-beta, consensus interferon, erythropoietin (EPO),
granulocyte colony stimulating factor (GCSF), granulocyte/macrophage colony stimulating factor (GM-CSF), interleukins (including IL-2, IL-10, and IL-12), and colony stimulating factor.
The compounds of formula (XXII) may also be immunoglobuiins, such as, IgG, IgE, IgM, igA, lgD, and subclasses thereof, and fragments thereof. The term "antibody" or tf antibody fragments" refer to polycional and monoclonal antibodies, an entire immunoglobulin or antibody or any functional fragment of an

immunoglobin molecule which binds to the target antigen. Examples of such antibody fragments include Fv (fragment variable), single chain Fv, complementary determining regions (CDRs), VL (light chain variable region), VH (heavy chain variable region), Fab (fragment antigen binding), F(ab)2\ and any combination of those or any other functional group of an immunoglobin peptide capable of binding to a target antigen.
As stated, the pegylated compound may be prepared in any desired manner. Conditions, e.g., pH, should be selected which favor the site-specific pegylation of a-amino groups.
Generally, polypeptides may be pegylated with polyethylene glyco! compounds of the invention by adding the compound of formula (XXII), and the PEG reagent in a molar ratio range of 1:1 to 1:100. The reaction concentration may then placed in a borate, phosphate, or tri buffer at room temperature or 4 degrees Celsius for about .5 to 24 hours at a pH range of 5.5 to 9.0. The molar ratio of PEG reagent to peptide/proteins is generally from 1:1 to 100:1. The concentration of peptide/proteins is generally from 1 to 10 mg/ml. The concentration of buffer is usually 10 to 500 mM.
The pegylated compound may be isolated or purified in any desired manner. By way of example, the resultant reaction mixture may be diluted with an equilibration buffer (20mM Tris, pH 7.5) and the resulting mixture is then applied on a Q-Sepharose column. After the mixture is applied on the QA column, it is washed with the equilibration buffer eluted with 75 M NaCi; eluted

with 200 mM NaCi; eluted with 1M NaCI; and regenerated with 1M HOAC + 1M NaCi and 0.5 NaOH. By using reverse phase HPLC, it is possible to separate and isolate the N-terminal, monopegylated product from other byproducts in the mixture. Each collected product can then be confirmed by Matrix Assisted Laser Desorption/lonization-Time of Flight Mass Spectrometry (MALDI-TOF).
in a preferred embodiment of the pegylation method of the invention, a polypeptide of formula (XXII):
NH2B (XXII); is reacted with a polyethylene giycol aldehyde molecule of formula (II):
Ri-(CH2CH2O)n-CH2CH2-O-(CH2)m-CO-NH-(CH2)p-CHO (II)
wherein Ri, m, n, and p are defined as above; to produce a compound of formula (XXIV):
Rr(CH2CH2O)n-CH2CH2-O-(CH2)m-CO-NH-(CH2)p-NHB (XXIV) wherein the polyethylene giycol aldehyde molecule is bonded to the N-terminal amino group of the polypeptide.
In preferred embodiments, p is 3, Ri is methoxy, m is 1, and n is from 100 to 750; or p is 2, Ri is methoxy, m is 1, and n is from 100 to 750; or p is 1, Ri is methoxy, m is 1, and n is from 100 to 750.
Additional illustrations of the use of the compounds of the present invention are disclosed in the concurrently filed U.S. Patent Applications entitled "Pegylated T20 Polypeptide," US Serial No. 60/398,195 filed July 24, 2002, and



The pegylated polypeptides may be used in any desired manner. Suitably, however, they are used to prepare pharmaceutical compositions, by admixture with a pharmaceutically acceptable excipient. Such pharmaceutical compositions may be in unit dosage form. They may be injectable solutions or suspensions, transdermal delivery devices, or any other desired form.
The following examples are provided to further illustrate the present invention. These examples are illustrative only and are not intended to limit the scope of the invention in any way.
EXAMPLES
Example 1
Preparation of PEG Aldehyde Compounds
Five grams of PEG (molecular weight of 1,000 to 60,000 daltons) in 50 to 100 ml of toluene is azeotropicaily dried by refluxing for 1 to 3 hours, followed by the removal of 20 to 30mL of toluene. The resulting solution is cooled to room temperature then potassium tert-butoxide (1 to 10 molar excess) in 20-50 ml of absolute tert-butanoi and 20-50 ml of toluene is added to the PEG solution. The resulting mixture is then stirred for two hours at room temperature under argon.
Tert-butyl bromoacetate (1 to 10 molar excess) is added to the reaction via syringe and the reaction mixture stirred overnight at room temperature under argon gas. Depending on the desired size of the "m" group defined in formula (XVI), tert-butyl bromoacetate can be replaced with another halogenated derivative of acetic acid, e.g., propionic acid, butyric acid, etc.

The reaction solution is then condensed by rotary evaporation and the residue precipitated by the addition of diethyl ether. The precipitated product, PEG t-butyl carboxy ester, is filtered off and dried in vacuo.
PEG t-butyl carboxy ester (4 g) is then dissolved in 50 to 100 ml of 1N sodium hydroxide and the solution stirred at room temperature overnight. The pH of the mixture is adjusted to 2.5 to 3.0 by addition of 1 to 6N hydrochloric acid, and the mixture extracted with dichloromethane. The organic layer is then dried over sodium sulfate, filtered, concentrated, and precipitated into diethyl ether. The product, PEG-carboxylic acid, is collected by filtration and dried under vacuum.
The PEG-carboxyiic . acid (3 g) is then dissolved in anhydrous dichloromethane (20-30 ml) followed by the addition of 4-aminobutyiraldehyde diethyl acetal (1-5 molar excess), 1-hydroxybenzotriazole (1-5 molar excess), and dicyclohexylcarbodiimide (1-5 molar excess). Depending on the desired size of the Kp" group defined in formula (XIII), 4-aminobutyraIdehyde diethyl acetal can be replaced with another amine derivative of diethyl acetal, e.g., 3-aminopropionaldehyde diethyl acetal or 2-aminoacetalaIdehyde diethyl acetal.
The resulting mixture is stirred overnight at room temperature under argon gas. The reaction mixture is filtered, concentrated, and precipitated with a mixture of 2-propanol and diethyl ether (1:1). The PEG aceta! product is dried in vacuo overnight.

The PEG acetai product is then dissolved in 10 - 200 ml of 1 - 90% CFsCOOH, and the solution is stirred at room temperature overnight. The pH of the mixture is adjusted to 6.0 by addition of 1 N NaOH solution, and sodium chloride (10 wt %) is then added and the pH of the solution is adjusted to 7.0 by addition of 1 N NaOH. The mixture is then extracted with dichloromethane. The organic layer is dried over sodium sulfate, filtered, concentrated, and precipitated with diethyl ether. The product, PEG aldehyde, is collected by filtration and dried under vacuum.
Example 2
Preparation of mPEGmtc-butanoaldehyde
The following represents a general reaction scheme for preparing mPEG10k-butanoa!dehyde of the invention:









Example 5 Preparation of PEGgmrdi-butanoaldehyde
PEG2ok-di-butanoaidehyde was prepared by dissoiving PEG2Ok-di-butyraldehyde diethyl acetal (3.1 g, Moi. Wt. 20,000), which was prepared according to the procedure in example 1, in 20 ml of 80% trifluoacetic acid (Aldrich, 99+%). The reaction solution was stirred overnight at room temperature under argon gas. 1N NaOH was then added dropwise to the reaction solution until a pH of 6.0 was obtained. Next, NaCI (10 wt%) was added to the above solution. The pH was then adjusted to 6.95 ± 0.05 by adding 0.1 N NaOH. The solution was then extracted with methylene chloride. The organic layer was then dried over sodium sulfate, filtered, concentrated, and precipitated with diethyl ether. The product, PEG2ok-di-butanoaldehyde, was collected by filtration and dried under vacuum. Yield: 2.5 g (81%).
Example 6 Preparation of mPEGgnw-butanoaldehyde
mPEG2ok-butanoaldehyde was prepared by dissoiving mPEG2ok-butyraldehyde diethyl acetal (3.0 g, Moi. Wt. 20,000), which was prepared according to the procedure in Example 1, in 30 ml of 80% trifluoacetic acid (Aldrich, 99+%). The reaction solution was stirred overnight at room temperature under argon gas. 1N NaOH was then added dropwise to the reaction solution until a pH of 6.0 was obtained. Next, NaCI (10 wt%) was added to the above

solution. The pH was then adjusted to 6.95 ± 0.05 by adding 1 N NaOH. The solution was then extracted with methylene chloride. ■ The organic layer was then dried over sodium sulfate, filtered, concentrated, and precipitated with diethyl ether. The product, mPEG20k-butanoa!dehyde, was collected by filtration and dried under vacuum. Yield: 2.5 g (83.3%).
Example 7 Preparation of mPEGgok-butanoaldehyde
mPEG2ok-butanoaldehyde was prepared by dissolving mPEG2ok-butyraldehyde diethyl aceta! (14.7 g, MoL Wt. 20,000), which was prepared according to the procedure in Example 1, in 200 ml of 10% trifiuoacetic acid (Aldrich, 99+%). The reaction solution was stirred overnight at room temperature under argon gas. 1N NaOH was then added dropwise to the reaction solution until a pH of 6.0 was obtained. Next, NaCI (10 wt%) was added to the above solution. The pH was then adjusted to 6.95 ± 0.05 by adding 0.1 N NaOH. The solution was then extracted with methylene chloride. The organic layer was then dried over sodium sulfate, filtered, concentrated, and precipitated with diethyl ether. The product, mPEG2ok- butanoaldehyde, was collected by filtration and dried under vacuum. Yield: 13.1 g (89%).















Documents:

785-CHENP-2007 CORRESPONDENCE OTHERS 25-01-2012.pdf

785-CHENP-2007 CORRESPONDENCE OTHERS 29-07-2013.pdf

785-CHENP-2007 EXAMINATION REPORT REPLY RECEIVED 23-07-2013.pdf

785-CHENP-2007 FIRST PAGE OF US PATENT 25-10-2012.pdf

785-CHENP-2007 FORM-3 29-07-2013.pdf

785-CHENP-2007 OTHER PATENT DOCUMENT 29-07-2013.pdf

785-CHENP-2007 AMENDED PAGES OF SPECIFICATION 23-07-2013.pdf

785-CHENP-2007 AMENDED CLAIMS 23-07-2013.pdf

785-CHENP-2007 EXAMINATION REPORT REPLY RECEIVED 25-10-2012.pdf

785-CHENP-2007 OTHERS 23-07-2013.pdf

785-chenp-2007-abstract.pdf

785-chenp-2007-assignement.pdf

785-chenp-2007-claims.pdf

785-chenp-2007-correspondnece-others.pdf

785-chenp-2007-description(complete).pdf

785-chenp-2007-form 1.pdf

785-chenp-2007-form 26.pdf

785-chenp-2007-form 3.pdf

785-chenp-2007-form 5.pdf


Patent Number 256861
Indian Patent Application Number 785/CHENP/2007
PG Journal Number 32/2013
Publication Date 09-Aug-2013
Grant Date 05-Aug-2013
Date of Filing 23-Feb-2007
Name of Patentee F. HOFFMANN-LA ROCHE AG
Applicant Address 124 GRENZACHERSTRASSE, CH-4070 BASEL, SWITZERLAND
Inventors:
# Inventor's Name Inventor's Address
1 WON, CHEE-YOUB 91 BELMONT DRIVE, LIVINGSTON, NJ 07039,
PCT International Classification Number C08G 65/324
PCT International Application Number PCT/EP03/07734
PCT International Filing date 2003-07-16
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/398,196 2002-07-24 U.S.A.