Title of Invention

PLASMIDS CODING FOR P185NEU PROTEIN SEQUENCE VARIANTS AND THERAPEUTIC USES THEREOF

Abstract DNA plasmids containing sequences coding for different fragments of 185neu oncoprotein which are able to induce an immune response against p185neu-overexpressing tumors, and pharmaceutical compositions thereof are described.
Full Text WO 2006/040660 PCT/IB2005/003052
PLASMIPS CODING FOR pl85'CB PROTEIN SEQUENCE
VARIANTS AND THERAPEUTIC USES THEREOF
The present invention refers to plasmid vectors containing DNA
sequences coding for truncated and chimeric forms of pl85neu protein, and use
thereof in DNA vaccination against Her-2/neu (ErbB-2)-positive tumors that
express pl85neu protein. Plasmids according to the invention are capable of
eliciting a protective immune response which is based on antibody and/or T
lymphocyte induction against pl85neu protein-expressing tumors. The
invention further refers to pharmaceutical compositions containing such
plasmids and use thereof in preventive or therapeutic treatment of pl85ncu-
positive tumors.
Background of the invention
Neoplastic cells often differ from normal cells in that they express
several proteins abnormally. Due to this anomalous expression, some proteins
can act as Tumor Associate Antigens (TAA). This is because the host immune
system can recognize these abnormalities and elicit an immune response that
might protect the host from tumor onset and development. To be a target of
antitumoral immunotherapy, a TAA must:
• have a pathogenetic role in a certain stage of neoplastic growth;
• be detectable by immune system even when the tumor gives rise to
clonal variants which no more express major histocompatibility
complex (HLA) glicoprotcins;
• be recognized by both antibodies and T lymphocytes.
Several TAA have been discovered in human carcinomas in recent years.
Among them, p185neu, the protein product of Her-2/neu (ErbB2) oncogenc, is a
particularly suited target for immunothera+py (Lollini and Forni, 2003, Trends

WO 2006/040660 PCT/IB2005/003052
2
Immunol. 24: 62). p185neu is a membrane receptor of class I receptor tyrosin
kinase family, which also encompasses the epidermal growth factor receptor
(EGF-R or ErbB-1) and other related receptors (ErbB-3, ErbB-4) which play a
key role in cell proliferation and differentiation (Hynes and Stern, 1994, BBA
1198: 165).
pl85neu receptor protein can be subdivided into three domains: the
extracellular domain (EC domain), the transmembrane domain (TM domain), and
the intracytoplasmic domain (IC domain). Recently, the EC domain
crystallographic structure of human and rat P185neu protein has been published.
This domain has been described to be composed of four subdomains (I/Ll,
II/CR1, III/L2, and IV/CR2) for approximately 630 amino acids in all. It has been
further shown that p 185neu protein has a rigid conformation, which allows it to
interact with other ErbB receptors, dimerize, and induce transduction of
proliferation signal even if this protein binds no ligands directly (Cho et al.,
2003, Nature 421: 756).
Her-2/neu (ErbB2) oncogene is involved in normal processes of
embryonic organogenesis and epithelial growth, while in adults it is expressed
only at faint levels (Press et al., 1990, Oncogene 5: 953). In humans,
overexpression of this oncogene is mainly caused by gene amplification.
Her-2/neu (ErbB2) oncogene is overexpressed in about 30% of mammary
carcinomas, and such an overexpression is related to a more rapid tumor
progression (Slamon et al., 1989, Science 244: 707). Among the different
strategies which have been proposed, DNA vaccination seems to be an effective
method to elicit an immune response to Her-2/neu-positive tumors. Even
though pl85neu protein is a "self antigen, i.e. a protein which is normally
present in the body, patients with pl85neu-positive mammary carcinomas often
exhibit an immune response, both cellular and humoral (Signoretti et al., 2000,
J. Natl. Cancer Inst. 23: 1918; Disis et al., 1994, Cancer Res. 54: 16; Peoples et

WO 2006/040660 PCT/IB2005/003052
3
al, 1995, Proc. Natl. Acad. Sci. USA 92: 432). One of the objectives of
antitumoral immunotherapies directed towards plSSneu" protein is to increase the
response intensity in patients with a pre-existing immune response, or to
generate an immune response in patients in whom this response is undetectable.
The fact that pl85neu protein is a "self antigen entails that the vaccine must be
able to overcome an immunotolerant state.
The inventors of the instant patent application were the first using and
validating the efficacy of DNA vaccination in eliciting an immune protection
both to spontaneous mammary carcinomas and transplantable Her-2/neu-
positive tumors. These studies have proven that prevention and treatment of
preneoplastic lesions is an accessible goal. In particular, in experiments aimed
at preventing the development of spontaneous mammary tumors that arise in
transgenic mice due to rat Her-2/neu oncogene (FVB/neuT mice and BALB-
neuT mice), it has been shown that the plasmid coding for rat p185neu protein
EC and TM domains is capable of eliciting a more effective protection
compared to the plasmid coding for full-length pl85neu protein or plasmid
coding for its EC domain only (secreted antigen) (Amici et al., 2000, Gene
Ther. 7: 703; Rovero et al., 2000, J. Immunol. 165: 5133). Similar data have
been reported by Chen et al., (1998, Cancer Res. 58: 1965). Furthermore, it has
been shown that efficacy of vaccination with DNA plasmids is strongly
increased if it is followed by a very short electric pulse when plasmids are
inoculated intramuscularly (Quaglino et al., 2004, Cancer Res. 64: 2858). Other
authors have shown that plasmids coding for full-length pl85neu protein, if
necessary mutated such that it does not possess tyrosine kinase activity, are
efficacious in preventing the onset of tumors following the transplant of
pl85ncu-positive cancer cells (Wei-Zen et al., 1999, Int. J. Cancer 81: 748). The
same plasmids have proven as much effective even when, deprived of the leader
signal responsible for protein processing in the endoplasmic reticulum, they

WO 2006/040660 PCI7IB2005/003052
4
bring about the cytoplasmic localization of pl85neu antigen. When plasmids
coding for pl85neu protein which localizes in membrane thanks to the presence
of a leader signal are used, protections depends upon an immune response
which relies on antibodies. On the contrary, a T lymphocyte-mediated immune
response is observed if vaccine does not contain a leader signal, and hence
pl85neu protein localizes in the cytoplasm of transfected cells rather than on
their plasma membrane (Pilon et al., 2001, J. Immunol. 167: 3201). In addition,
a combined vaccination obtained by using both plasmids with a leader signal
and those in which this leader signal has been deleted, is more effective in
protecting against tumor growth (Piechocki et al., 2001, J. Immunol. 167:
3367). This demonstrates that there is a synergistic effect between humoral and
cellular responses in the prevention of p ^""-positive carcinomas (Reilly et
al., 2001, Cancer Res. 61: 880).
Vaccination with the plasmid coding for EC and TM domains (EC-TM
plasmid) has proven efficacious not only in preventing the development of
spontaneous pl85neu-positive carcinomas, but also in treating tumor masses of 2
mm in diameter by involving a range of effector immune system mechanisms
(T helper and T killer cells, antibodies, macrophages, neutrophils, natural killer
cells, Fc receptors, IFN-gamma, and performs), which coordinatcly contribute to
tumor rejection (Curcio et al., 2003, J. Clin. Invest. 111: 1161).
Description of the invention
Several plasmids coding for the full-length TM domain and decreasing
portions of EC domain of rat pl85neu protein have been construclcd. The
truncated plasmids, obtained by deleting the NH2-terminal 240 base pairs (bp),
or multiples of this length, were used in experiments aimed at preventing
growth of transplantable rat pl85ncu protein-overexpressing tumor cells (TUBO
cells). Furthermore, a series of plasmids coding for chimeric pl85ncu protein
forms were created by adding NH2-terminal portions of human ErbB2 cDNA to

WO 2006/040660 PCT/IB2005/003052
5
sequences coding for the truncated forms of rat protein to reconstitute the whole
protein sequence.
Protection achieved following vaccination with plasmid coding for the
full-length EC and TM domains is mainly due to antibody production, while
protection attained by using plasm ids coding for the truncated forms of rat
pl85neu protein is not associated with a significant antibody production in
many cases.
On the basis of the results of the in vivo experiments, plasmids capable
of inducing a strong immune response, both antibody and T
lymphocyte-mediated, were selected.
In a first aspect, the invention refers to plasmids containing a coding
sequence for a pl85neu protein fragment, which sequence is selected from the
group consisting of SEQ ID NO: 1-5; or a sequence coding for a chimeric
pl85neu protein, which sequence is selected from the group consisting of SEQ
ID NO:6-12 (reference sequences for genes coding for human and rat pl85ncu
proteins are deposited in Gene Bank with accession NO. MI 1730 and X03362,
respectively).
DNA sequences coding for the truncated and chimeric forms of pl85ncu
protein according to the invention can be inserted into any plasmid vectors
suitable for use in mammals, particularly in humans. Besides the above coding
sequences, plasmids can include functional elements to control transcription, in
particular promoters, preferably the CMV promoter, located upstream of the
coding sequence, transcription initiation and stop sequences; a selection marker,
preferably the ampicilline or kanamycine resistance genes; CpG motifs; a
polyadenilation site; and in case enhancers or transcription activators. The
elements for controlling transcription must be suitable for use of vectors in
mammals, particularly in humans.
In another aspect, the invention concerns a pharmaceutical composition

WO 2006/040660 PCT/IB2005/003052
6
containing a DNA plasmid defined as above, together with pharmaceutically
acceptable vehicles and excipients. Alternatively, the compositions can
contain admixtures of two or more different plasraids coding for both the
truncated and chimeric forms of pl85neu protein. The pharmaceutical
compositions in a suitable form for parenteral administration, preferably in the
form of an injectable solution, are preferably used for DNA vaccination.
Principles and methods for DNA vaccination are known to those skilled in the
art, and are described, e.g., in Liu, 2003; J. Int. Med. 253: 402.
Utilization of plasmids coding for the pl85neu truncated and chimeric
forms to preventively and therapeutically vaccinate against pl85neu-positive (Her-
2/neu-, ErbB-2-positive) tumors has a variety of advantages which ameliorate its
efficacy. For plasmids coding for the truncated forms, these advantages are:
1) The possibility to obtain a vaccine coding only for definite TAA
portions against which it is desired to develop an immune response;
this vaccine has a les chance to elicit autoimmune phenomena.
2) The exclusive induction of some selected forms of immune response,
i.e. an antibody-mediated form or a T lymphocyte-mediated form.
3) The possibility to produce vaccines which combine multiple epitopes
having a defined imraunogenicity by binding cDNA fragments each
other which code for different truncated forms, not necessarily
sequentially.
The use of chimeric plasmids generated by a combination of truncated
forms of pl85neu from a different animal species allows to:
a) Vaccinate with plasmids coding for protein determinants of the same
species to be immunized, e.g. humans, which is able to elicit a specific
high-affinity response;
b) Combine plasmids coding for antigenic determinants of the same
species to be immunized with cDNA sequences coding for antigenic

WO 2006/040660 PCT/IB2O05/003O52
7
determinants from other species, the antigenic determinants showing a
substantial similarity but differing in that those from other species
elicit a more intense immune response, thus overcoming the tolerance
state. These allogeneic determinants, which are recognized as partially
exogenous, act as helper determinants facilitating the induction of a
more intense response and cytokine release;
c) Combine plasmids coding for antigenic determinants of the same
species with cDNA sequences which, by coding determinants of
another species, in some individuals can give rise to heteroclytic
determinants which bind with higher affinity to HLA molecules and
induce more intense immune responses having a higher affinity;
d) Have a vaccine which combines advantages from a) with those from
b) and c).
Properly formulated DNA plasmids according to the invention are used in
preventive or therapeutic treatment of humans or animals which show a high risk
of developing pl85neu positive carcinomas, or patients carrying pl85neu-positive
primary rumors, their relapses or metastases. Prevention can be primary, when
the tumor is not evident yet; secondary, when the tumor is in its initial stages as a
preneoplastic lesion; or tertiary, if a tumor relapse or metastatic process is
observed.
Tumors treatable with plasmids or compositions of the invention are
primarily those of epithelial origin, particularly pulmonary, ovarian, and
mammary adenocarcinomas; squamous head and neck carcinomas, and more
generally pl85ncu protein-expressing tumors.
Detailed description of the invention
Construction of plasmids coding for truncated forms of rat pl85neu
protein
The plasmid backbone pCMV3.1 (obtained in our laboratory starting

WO 2006/040660 PCT/IB2005/003052
8
from pcDNA3.1 from Invitrogen, Milan, Italy) was used to produce the DNA
plasmids coding for the full-length TM domain and decreasing portions of EC
domain of rat pl85neu protein. pCMV3.1 contains the rat Her-2/neu 5' UTR
nucleotide sequence (which is transcribed but not translated) and leader
sequence (neuL). The secretion signal DNA fragment of rat pl85neu protein
was obtained by enzymatic amplification of DNA using the pCMV-EC-TM
vector (Amici et al, 2000, Gene Ther., 7: 703; Rovero et al., 2000,
J. Immunol., 165: 5133) as a template, T7 primer as a sense oligonucleotide
(oligonucleotide #1), and an oligonucleotide (oligonucleotide #2) having a
terminal EcoRI site as an antisensc oligonucleotide. Following purification
and digestion with Hindlll and EcoRI restriction enzymes, the amplified
fragment was cloned into pCMV3.1 plasmid which had been digested with the
same enzymes, thus obtaining pCMV3.1-neuL. Subsequently, seven different
sequences coding for the deleted fragments of EC domain and full-length TM
domain of rat pl85neu protein have been inserted in frame into pCMV3.1-neuL
vector digested with EcoRI and Xbal restriction enzymes. The new plasmids
so obtained were designated pCMV3.1-neuL-rECl-TM (-70 amino acids)
(Fig. 1), pCMV3.1-neuL-rEC2-TM (-150 amino acids) (Fig. 2), pCMV3.1-
neuL-rEC3-TM (-230 amino acids) (Fig. 3), pCMV3.1-neuL-rEC4-TM (-310
amino acids) (Fig. 4), pCMV3.1-neuL-rEC5-TM (-390 amino acids) (Fig. 5),
pCMV3.1-neuL-rEC6-TM (-470 amino acids) (Fig. 6), and pCMV3.1-neuL-
rEC7-TM (-550 amino acids) (Fig. 7). The fragment coded for by the first of
these plasmids is 70 amino acids shorter, including the secretion signal amino
acid sequence. All other fragments are progressively shorter by 80 amino
acids.
These fragments have been produced by enzymatic amplification of
DNA using seven different sense oligonucleotides all having a terminal £coRI
restriction site (oligonucleotides #3-#9), and an antisense oligonucleotide

WO 2006/040660 PCT/IB2005/003052
9
(oligonucleotide #10) capable of recognizing a site called "pcDNA3.1/BGH
Reverse Priming Site" (830-850 nt) at the 3' end of pCMV3.1 multiple
cloning site. As a DNA template for PCR, pCMV-EC-TM vector (Amici A. et
al. 2000, Gene Ther. 7: 703; Rovero et al., 2000, J. Immunol. 165: 5133) was
used. Following enzymatic digestion with EcoRI and Xbal restriction
enzymes, amplification products were cloned into pCMV3.1-neuL plasmid.
Vaccination with pCMV3.1-neuL-rEC4-TM plasmid as well as
vaccination with pCMV3.1-neuL-rEC-TM plasmid which codes for the full-
length EC and TM domains protects 100% of BALB/c mice from developing
tumors induced by inoculation of TUBO cells. On the other hand, vaccination
with pCMV3.1-neuL-rECl-TM, pCMV3.1-neuL-rEC2-TM, and pCMV3.1-
neuL-rEC3-TM plasmids which code for the first three truncated forms of
pl85neu protein protects 70-80% of BALB/c mice. pCMV3.1-neuL-rEC5-TM
plasmid which codes for the fifth truncated form protects 50% of BALB/c
mice, while pCMV3.1-neuL-rEC6-TM and pCMV3.1-neuL-rEC7-TM
plasmids which code for the sixth and seventh truncated forms induce no
protection. The results obtained demonstrate that cellular response activated
by the pl85neu protein truncated forms whose localization is cytoplasmic, is
sufficient in antitumoral prevention. However, concomitant activation of
cellular and humoral responses allows obtaining a more effective therapy
(Rielly et al., 2001, Cancer Res. 61: 880). To attain antibody production,
vaccination must be carried out with plasmid coding for the full-length EC and
TM domains of pl85neu protein. Vaccination with pCMV3.1-neuL-rEC4-TM
plasmid which codes for the fourth truncated pl85neu form lacking amino acids
1-310 is still able to confer a full protection, but antibody response is 10-fold
lower compared to that of pCMV3.1-neuL-rEC-TM plasmid (Table 1).

WO 2006/040660 PCT/IB2005/003052
10
Table 1

Plasmids Nº mice Protection Antibodies
pCMV3.1-neuL 5 0% -
pCMV3.1-neuL-rEC-TM 5 100% +++
pCMV3.1-neuL-rECl-TM 5 80% -
pCMV3.1-neuL-rEC2-TM 5 75% -
pCMV3.1-neuL-rEC3-TM 5 70% -
pCMV3.1-neuL-rEC4-TM 5 100% +
pCMV3.1 -ncuL-rEC5-TM 5 50% -
pCMV3.1-neuL-rEC6-TM 5 0% -
pCMV3.1-neuL-rEC7-TM 5 0% -
Construction of chimeric human-rat plasmids capable of coding for
seven different fusion forms of pl85neu protein (HuRTl-7)
The majority of epitopes presented by HLA are located on the first
subdomain (I/Ll) of pl85neu protein. Therefore, chimeric plasmids coding for
sequences of human ErbB2 protein which are increasingly longer starting from
NH2-end (the outermost portion of EC domain) have been constructed to
induce a specific immune response against these epitopes. These new
plasmids, designated HuRT (Human Rat Transmembrane), were created by
adding the lacking portions of human ErbB2 cDNA to sequences which code
for the truncated forms of rat pl85neu protein.
The first five truncated plasmids coding for full-length TM domain and
decreasing fragments of EC domain of rat pl85neu protein were digested with
Hindlll and EcoRl restriction enzymes. The five different human cDNA
fragments obtained by PCR and digested at their ends were cloned within these
five truncated plasmids, so that reading frame was maintained. The cDNA
fragments coding for portions of human pl85neu protein to be inserted,
including the 5' UTR region and secretion signal to pass through endoplasmic
reticulum, were produced by amplification using pcDNA3.1erbB2 plasmid as a

WO 2006/040660 PCT/IB2005/003052
11
template. Six oligonucleotides were used as primers. The sense oligonucleotide
is the same for all six primers and corresponds to T7 primer (oligonucleotide
#1), while the five antisense oligonucleotides were designed so that they
recognized human ErbB2 oncogene cDNA in increasingly advanced positions
of the sequence and had an EcoRl restriction site at their 3' ends
(oligonucleotides #11-#15). Following purification and digestion with Hindlll
and EcoKl restriction enzymes, the amplified fragments were inserted into
corresponding plasmids (pCMV3.1-rECl-TM, pCMV3.1-rEC2-TM, pCMV3.1-
rEC3-TM, pCMV3.1-rEC4-TM, pCMV3.1-rEC5-TM), which had been
previously digested with the same restriction enzymes. In this way five new
plasmids have been obtained (pCMV3.1-HuRTl-5) which code for chimeric
proteins of 689 amino acids in length, 2 amino acids of which (Glu-Phe) belong
to the EcoRl restriction site used to join human and rat DNAs. The proteins
coded for by these chimeric plasmids differ from each other by increasing
portions of human pl85Deu protein and decreasing portions of rat pl85ncu
protein.
To obtain the chimeric plasmids coding for the sixth and seventh
truncated forms of rat pl85neu protein, two new plasmids were constructed in
which cloning sites other than EcoKl could be used, as an EcoRl restriction
site is present in the position 1450 in human ErbB2 gene sequence. pCMV3.1
was modified by using a synthetic sequence made up of a sense
oligonucleotide (oligonucleotide #16) and an antisense oligonucleotide
(oligonucleotide #17), so that one of the two restriction sites for Pmel enzyme
was deleted and the restriction sites for Hindlll and Nhel restriction enzymes,
located on its multiple cloning site, were inverted. The new plasmid backbone
so obtained was designated pCMV3.1H/N. Fragments for the sixth and
seventh truncated forms of rat pl85neu protein were produced by amplification
using pCMV-EC-TM plasmid (Amici et al.y 2000, Gene Ther., 7: 703; Rovero

WO 2006/040660 PCT/1B2005/003052
12
et al.t 2000, J. Immunol.y 165: 5133) as a template and two different sense
oligonucleotides with a Nhel restriction site at their ends (oligonucleotides
#18 and #19), and antisense oligonucleotide #10.
Following enzymatic digestion with restriction enzymes Nhel and Pmel,
the amplification products were cloned into pCMV3.1H/N plasmid, thus
obtaining the new pCMV3.1H/N-rEC6-TM and pCMV3.1H/N-rEC7-TM
plasm ids. The cDNA fragments coding for portions of human pl85neu protein
to be inserted to generate the chimeric pCMV3.1H/N-HuRT6 and
pCMV3.1H/N-HuRT7 plasmids were obtained by amplification using
pcDNA3.1erbB2 plasmid as a template, T7 primer as a sense oligonucleotide
(oligonucleotide #1), and two primers designed so that they recognized human
cDNA at suitable positions and had a Nhel restriction site at their ends
(oligonucleotides #20 and #21), as antisense oligonucleotides.
Following purification and digestion with Hindlll and Nhel restriction
enzymes, the amplified fragments were inserted into corresponding plasmids
(pCMV3.1H/N-rEC6-TM; pCMV3.1H/N-rEC7-TM), which had previously
digested with the same restriction enzymes. In this way the two new chimeric
pCMV3.1H/N-HuRT6 and pCMV3.1H/N-HuRT7 plasmids were obtained,
which code for proteins of 689 amino acids in length, 2 amino acids of which
(Val-Ser) belong to the Nhel restriction site used to join human and rat DNAs.
These manipulations led to the following plasmids:
• pCMV3.1-HuRTl plasmid (Fig. 8), which codes for 70 amino acids
of EC domain of human pl85neu protein, 2 amino acids belonging to
EcoRI site and 618 amino acids of rat pl85neu protein
• pCMV3.1-HuRT2 plasmid (Fig. 9), which codes for 150 amino
acids of human pl85ncu protein EC domain and 538 amino acids of
rat pl85neu protein
• pCMV3.1-HuRT3 plasmid (Fig. 10), which codes for 230 amino acids

WO 2006/040660 PCT/IB2005/003052
13
of EC domain of human pl85neu protein and 458 amino acids of rat
pl85neu protein
• pCMV3.1-HuRT4 plasmid (Fig. 11), which codes for 310 amino
acids of EC domain of human pl85neu protein and 378 amino acids
of rat pl85neu protein
• pCMV3.1-HuRT5 plasmid (Fig. 12), which codes for 390 amino
acids of EC domain of human pl85neu protein and 298 amino acids
ofrat pl85neu protein
• pCMV3.1 H/N-HuRT6 plasmid (Fig. 13), which codes for 470 amino
acids of EC domain of human pl85neu protein and 218 amino acids
of rat pl85neu protein
• pCMV3.1 H/N-HuRT7 plasmid (Fig. 14), which codes for 550 amino
acids of EC domain of human pl85neu protein and 138 amino acids
of rat pl85ncu protein.
The indirect evidence of a membrane expression of the chimeric
human-rat proteins coded for by these plasmids has been obtained by
immunizing mice with the seven new plasmids (pCMV3.1-HuRTl-5 and
pCMV3.1H/N-HuRT6-7). The sera from all vaccinated mice have specific
antibodies against the chimeric human and rat pl85ncu protein. Furthermore,
animals vaccinated with plasmids coding for the seven different chimeric
proteins are protected from a lethal inoculation of TUBO cells and/or human
pl85neu protein-overexpressing tumor cells (D2F2-E2 cells).
EXAMPLES
Example 1: Construction of pCMV3.1-HuRT5 Plasmid
pCMV3.1-rEC5-TM plasmid, which codes for the fifth truncated form
of rat pl85neu protein, was digested with HindlU and £coRI restriction
enzymes (BioLabs, Beverly, MA) to delete the 5' UTR region and neuL
sequence.

WO 2006/040660 PCT/IB2005/003052
14
The 4794 bp DNA band corresponding to pCMV3.1-rEC5-TM plasmid
lacking the 5' UTR region and neuL sequence was separated by agarose gel
electrophoresis and eluted using a Qiaquick gel extraction kit (Qiagen, Italy).
The cDNA for the 5' UTR region, leader sequence, and sequence coding for
the missing part of human ErbB2 gene was obtained by PCR.
pcDNA3.1ErbB2 plasmid was used as a template, T7 primer (oligonucleotide
#1) was used as a sense oligonucleotide, and a primer with an EcoRl
restriction site at its 5' end (oligonucleotide #15) was used as an antisense
oligonucleotide. To perform the PCR reaction, reagents and a proofreading
Taq polymerasc of Finnzymes (CELBIO, Milan, Italy) were employed.
Following the PCR reaction, the amplified DNA was purified and precipitated
by standard methods, resuspended in 50ul H2O, and digested with HindlU and
£coRI restriction enzymes. The cDNA fragment coding for the relevant
portion of human ErbB2 and the linearized pCMV3.1-rEC5-TM plasmid were
cloned by ligation reaction using T4 DNA ligase (BioLabs, Beverly, MA).
The ligation product was then used to transform DH5ct strain E. coli
bacteria which had been made competent by the calcium chloride technique.
The clones so obtained were analyzed by alcaline lysis to detect the
clones containing the chimeric pCMV3.1-HuRT5 plasmid.
pCMV3.1-HuRT5 was then analyzed by the Sanger sequencing method
using an ABI PRISM 310 Genetic Analyzer automated sequencer (Applied
Biosystem) to verify that insertion of human sequence portion coding for
ErbB2 gene into plasmid coding for the fifth truncated form of rat p!85ncu
protein had taken place correctly and without altering the reading frame.
List of oligonucleotides:
11 T7 primer (SEQ ID No: 13)
12 neu leader antisense EcoRI (SEQ ID No: 14)
13 rECDl sense EcoRI (SEQ ID No: 15)

WO 2006/040660 PCT/IB2005/003052
15
14 rECD2 sense EcoRI (SEQ ID No: 16)
#5 rECD3 sense EcoRI (SEQ ID No: 17)
16 rECD4 sense EcoRI (SEQ ID No: 18)
17 rECDS sense EcoRI (SEQ ID No: 19)
18 rECD6 sense EcoRI (SEQ ID No: 20)
19 rECD7 sense EcoRI (SEQ ID No: 21)
#10 pcDNA3.1/BGH Reverse priming site (SEQ ID No: 22)
#11 His-Myc sense EcoRI mut (SEQ ID No: 23)
#12 His-Myc antisense EcoRI (SEQ ID No: 24)
#13 70 erbB2 antisense EcoRI (SEQ ID No: 25)
#14 150 erbB2 antisense EcoRI (SEQ ID No: 26)
#15 230 erbB2 antisense EcoRI (SEQ ID No: 27)
#16 310 erbB2 antisense EcoRI (SEQ ID No: 28)
#17 390 erbB2 antisense EcoRI (SEQ ID No: 29)
#18 Hindlll-Nhel sense (SEQ ID No: 30)
#19 Hindlll-Nhel antisense (SEQ ID No: 31)
#20 rECD6 sense Hhel (SEQ ID No: 32)
#21 rECD7 sense Hhel (SEQ ID No: 33)
#22 470 erbB2 antisense Hhel (SEQ ID No: 34)
#23 550 erbB2 antisense Hhel (SEQ ID No: 35)
Example 2: in Vivo Testing
Animals
BALB/c strain female mice about 7-week old were used for all
experiments. Animals came from Charles River Laboratories (Calco, Milan,
Italy), where they had been bred aseptically and according to the rules
established by European Community.
Intramuscular Administration Followed by in Vivo Electroporation
To avoid pain and undesired contractions of tibial muscles, each mouse

WO 2006/040660 PCT/IB2005/003052
16
was anaesthetized by intraperitoneal injection of 300pl Avertin, a solution
consisting of 0.58 g tribromoethanol (Sigma-Aldrich) and 310 \x[ Tert-Amyl
alcohol (Aldrich) in 39.5 ml deionized H2O. Tibial muscles of anaesthetized
mice were shaved, and 20 uJ of a solution containing 25 ug DNA were
inoculated in each muscle. The DNA-containing solution was prepared just
before use according to Dr. F. Pericle's instructions (Valentis, Inc., The
Woodlands, Texas, USA). This solution contained plasmid DNA at a
concentration of 1.25 mg/ml, poly-L-glutamate sodium salt (Sigma-Aldrich,
S.r.l., Milan, Italy) at a concentration of 6 mg/ml, sodium chloride at a
concentration of 150 mM (Fluka, BioChemika, Buchs, Switzerland), and
endotoxin-free distillated water (Nuclearc Free Water, Promega Corporation)
to a final volume of lml. After about 5 minutes of inoculation, two electrical
pulses, 375 V/cm2 in intensity and 25 msec in duration each, generated by an
Electro Square Porator electroporator (T820, BTX, San Diego, CA, USA)
were applied to both tibial muscles of mice using two steel electrodes located
3 mm apart in a quadrangular arrangement laterally in the leg. Gene
immunization by electroporation was performed twice in each animal 21 and 7
days before inoculating tumor cells.
Inoculation of Tumor Cells
Left sides of mice were inoculated with 0.2 ml of a suspension
containing 2 x 105 TUBO cells.
In vivo Tumor Growth Evaluation
Tumor growth was evaluated by palpation weekly, and tumor size was
measured along two perpendicular diameters with a gauge. Neoplastic masses
of a size larger than 1 millimeter were considered as tumors. Tumor growth
was monitored for 100 days from tumor inoculation or until tumor size
exceeded 10 millimeters in diameter, time at which animals were sacrificed.
The results obtained demonstrate that chimeric pCMV3.1-HuRT5 plasmid is

WO 2006/040660 PCMB2005/003052
17
able to protect 100% of vaccinated BALB/c mice from a lethal inoculation of
TUBO cells (Table 2).
Table 2

Plasmids N° mice Protection Survival (days)
pCMV3.1-neuLpCMV3.1-neuL-rEC-TMpCMV3.1-HuRT5 555 0%100%100% + 35+ 100+ 100
Evaluation of Anti-pl85neu Antibody Presence in Sera of Vaccinated
Animals
The day preceding the inoculation of tumor cells, blood was drawn from
animals vaccinated with chimeric pCMV3.1-HuRT5 plasmid. Sera were
analyzed to assess the presence of rat anti-pl85neu antibodies. Sera were
incubated for 45 minutes at 4°C with cells overexpressing rat pl85neu. After
washing with a solution called the washing buffer, which consists of
phosphate buffer saline (PBS) containing 0.2% bovine serum albumin (BSA,
Sigma, Milan, Italy) and 0.1% sodium azide (NaN3, Sigma, Milan, Italy),
samples were incubated for 20 minutes at 4°C with an anti-mouse
immunoglobulin FITC-conjugated antibody, washed with washing buffer, and
analyzed by a FACScan cytofluorimeter (Becton Dickinson Immunocytometry
Systems, Mountain View, California, USA). Simultaneously, the same cells
were incubated with decreasing concentrations of monoclonal anti-c-ErbB2/c-
neu antibody (Ab4, Oncogene), so that a relationship between the fluorescence
intensities obtained through cytofluorimeter analysis and concentration of
anti-pl85neu antibodies in animal sera could be derived. The data obtained
show that all vaccinated animals exhibit high levels of anti-rat pl85neu
antibodies, and therefore chimeric pCMV3.1-HuRT5 plasmid is effective in
inducing rejection of transplantable pl85neu-positive tumors and in eliciting a
specific antibody response.

WO 2006/040660 PCT/IB2005/003052
18
CLAIMS
1. A plasmid vector for DNA transfer, which plasmid contains a sequence
selected from SEQ ID N. 1, 2, 3, 4, 5 coding for a fragment of pl85ncu protein,
or a sequence selected from SEQ ID N. 6, 7, 8, 9, 10, 11, 12 coding for a
chimeric pl85ncu protein.
2. Plasmid vector according to claim 1, further containing a transcription
promoter.
3. Plasmid vector according to claim 2, wherein said promoter is the CMV
promoter.
4. Plasmid vector according to claims 1-2 which is suitable for use in
mammals, particularly in humans.
5. Pharmaceutical composition containing a plasmid vector according to
claims 1-3 together with pharmaceutically acceptable vehicles and excipients.
6. Composition according to claim 5 which is suitable for parenteral
administration.
7. Composition according to claim 6 in the form of an injectable solution.
8. Composition according to claim 5 in the form of a DNA vaccine.
9 Use of a plasmid vector according to claims 1-4 for the preparation of a
therapeutic agent to be used in the prevention or treatment of subjects at risk
of developing pl85ncu-positive tumors, or patients carrying primary tumors,
metastases or pl85neu-positive tumor relapses.
10. Use according to claim 9 for the preparation of a DNA vaccine.

DNA plasmids containing sequences coding for different fragments of 185neu oncoprotein which are able to induce
an immune response against
p185neu-overexpressing tumors, and pharmaceutical compositions thereof are described.

Documents:

01710-kolnp-2007-abstract.pdf

01710-kolnp-2007-claims.pdf

01710-kolnp-2007-correspondence others 1.1.pdf

01710-kolnp-2007-correspondence others.pdf

01710-kolnp-2007-description complete.pdf

01710-kolnp-2007-drawings.pdf

01710-kolnp-2007-form 1.pdf

01710-kolnp-2007-form 3 1.1.pdf

01710-kolnp-2007-form 3.pdf

01710-kolnp-2007-form 5.pdf

01710-kolnp-2007-gpa.pdf

01710-kolnp-2007-international publication.pdf

01710-kolnp-2007-international search report.pdf

01710-kolnp-2007-pct request form.pdf

01710-kolnp-2007-priority document.pdf

01710-kolnp-2007-sequence listing.pdf

1710-KOLNP-2007-(03-10-2011)-AMANDED CLAIMS.pdf

1710-KOLNP-2007-(03-10-2011)-CORRESPONDENCE.pdf

1710-KOLNP-2007-(03-10-2011)-DESCRIPTION (COMPLETE).pdf

1710-KOLNP-2007-(03-10-2011)-DRAWINGS.pdf

1710-KOLNP-2007-(03-10-2011)-FORM 1.pdf

1710-KOLNP-2007-(03-10-2011)-FORM 2.pdf

1710-KOLNP-2007-(03-10-2011)-OTHERS.pdf

1710-KOLNP-2007-(03-10-2011)-PETION UNDER RULE 137.pdf

1710-KOLNP-2007-(09-03-2012)-CORRESPONDENCE.pdf

1710-KOLNP-2007-(09-03-2012)-FORM-2.pdf

1710-KOLNP-2007-ABSTRACT 1.1.pdf

1710-KOLNP-2007-AMANDED CLAIMS.pdf

1710-KOLNP-2007-DESCRIPTION (COMPLETE) 1.1.pdf

1710-KOLNP-2007-DRAWINGS 1.1.pdf

1710-KOLNP-2007-FORM 1-1.1.pdf

1710-KOLNP-2007-FORM 13.pdf

1710-KOLNP-2007-FORM 2.pdf

1710-KOLNP-2007-FORM 3-1.1.pdf

1710-KOLNP-2007-OTHERS 1.1.pdf

1710-KOLNP-2007-PETITION UNDER RULE 137.pdf

1710-KOLNP-2007-REPLY TO EXAMINATION REPORT.pdf


Patent Number 251146
Indian Patent Application Number 1710/KOLNP/2007
PG Journal Number 09/2012
Publication Date 02-Mar-2012
Grant Date 27-Feb-2012
Date of Filing 14-May-2007
Name of Patentee AMICI AUGUSTO
Applicant Address VIA CONTI DI SAN MAROTO, 19, I-62032, CAMERINO
Inventors:
# Inventor's Name Inventor's Address
1 QUAGLINO ELENA VIA PIACENZA, 6/E, I-10127 TORINO
2 CAVALLO FEDERICA VIA RICARDESCO, 18, I-10073 CIRIE'
3 FORNI GUIDO VIA DEI MILLE, 32, I-10123 TORINO
4 AMICI AUGUSTO VIA CONTI DI SAN MAROTO, 19, I-62032, CAMERINO
5 MARCHINI CRISTINA VIA HERMADA, 22, I-62012, CIVITANOVA MARCHE
PCT International Classification Number C07K 14/71
PCT International Application Number PCT/IB2005/003052
PCT International Filing date 2005-10-13
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 MI2004A001965 2004-10-15 Italy