Title of Invention

METHOD OF PRODUCING BACULOVIRUS

Abstract The present invention is directed to a method for producing commercial quantities of Baculovirus using combination of methods involving producing occlusion bodies with infectious baculovirus in caterpillar larvae and large numbers of viral particles with serial passages in cell culture. A two step method was developed by initially producing infectious virus in caterpillar larvae and the using the resultant infectious virus as an inoculum for a limited number of serial passages in cell culture so to produce large amounts of infectious baculovirus.
Full Text FORM 2
THE PATENT ACT 1970
(39 of 1970)
&
The Patents Rules, 2003 COMPLETE SPECIFICATION (See section 10 and rule 13)
1. METHOD OF PRODUCING BACULOVIRUS
2.
(A) THE UNIVERSITY OF QUEENSLAND
(B) Australia
(C) St. LUCIA, Brisbane, Queensland 4072 Australia
The following specification particularly describes the invention and the manner in which it is to be performed.
1

The present invention relates to the production of baculoviruses and in particular a method of producing commercial quantities of baculoviruses.
PRIOR ART
Baculoviruses have been used for a variety of applications including the production of recombinant proteins and use as biopesticides. The problem with commercially using baculoviruses has been the inability to produce large amounts of infectious baculovirus.
Economic commercial production of baculoviruses requires production of at least 10,000 litre culture with a virus yield greater than 150 OB (occlusion bodies) per cell (Greenfield, P. F., Reid, S., Weiss, S. & Scholz, B. (1999). Baculoviruses as biological control agents: research, production and commercial issues. In The 5th Asia-Pacific Biochemical Engineering Conference Proceedings. Phuket, Thailand). The standard scale-up process for large scale baculovirus production requires up to 5 passages of baculovirus in cell culture to obtain enough virus for a frozen Baculovirus working stock. A further 6 passages are required to scale-up the production process to 10,000 litre scale in order to achieve economical production (Rhodes, D. J. (1996). Economics of baculovirus-insect cell production systems. Cytotechnology 20, 291-297). According to this standard scale-up process, it will take 11 passages to obtain the final virus product at 10,000 litre scale, assuming that the virus is stable during serial passaging and is still producing more than 150 OB per cell.
Baculoviruses however are not stable during serial passaging in cell culture as they appear to mutate spontaneously to form FP (few polyhedra) mutants or DIP (defective interfering particles) mutants. FP mutants accumulate rapidly in cell culture due to spontaneous mutations in the 25K FP gene of the viral genome. For

HaSNPV, FP mutation is so rapid that by passage 6, the entire virus population is composed of FP mutants. The yield is below 10 OB per cell and the OB produced are not biologically active (Lua, L. H. L, Pedrini, M., Reid, S., Robertson, A. & Tribe, D. E. (2002). Phenotypic and genotypic analysis of Helicoverpa armigera nucleopolyhedrovirus serially passaged in cell culture. Journal of General Virology 83, 947-957). Similarly DIPs can also accumulate rapidly during serial passaging of Baculoviruses with high MOIs in cell culture. DIPs of AcMNPV infection have been detected as early as passage 4 when an MOI of 10 PFU per cell was used. DIPs are the result of large deletions in the virus genome. DIPs require a 'helper virus' (wild-type virus) for replication (Pijilman, G. P., van den Bom, E., Martens, D. E. & Vlak, J. M. (2001). Autographa californica baculoviruses with large genomic deletions are rapidly generated in infected insect cells. Virology 283,132-138). The occurrence of these mutations cause problems during the scale-up from virus inoculum to large scale production.
FP mutation during serial passaging of HaSNPV poses a greater threat to scale-up of a production process than does the appearance of DIPs. FP mutations occur much faster and earlier than DIPs, regardless of the MOI.
In cell culture, there does not appear to be any selection pressure for infectious OB. FP mutant infected cells bud more baculovirus than MP (many polyhedra) infected cells thereby providing a selective advantage for FP mutants. In larvae and unlike in cell culture, infectious OB have a selective advantage in being the form of baculovirus transmitted to other larvae (Potter, K. N., Jaques, R. P. & Faulkner, P. (1978). Modification of Trichoplusia ni nuclear polyhedrosis virus passaged in vivo. Intervirology 9, 76-85).


Serial passaging may produce large amounts of baculovirus but the virus is not infectious. Production of large quantities of virus from caterpillar larvae is impractical because of the large numbers of larvae required and difficulties in subsequent large scale purification necessary to isolate the virus. Methods of extracting occlusion derived virus from occlusion bodies after each passage during large volume production is also very difficult technically and impractical. It would be necessary for the occlusion bodies to be extracted from the cells and concentrated after each passage while maintaining sterility during the whole process.
At present, there are no methods of economically producing large commercial quantities of infectious baculovirus.
OBJECT OF THE INVENTION
It is an object of the present invention to provide an alternative method of producing large quantities of baculovirus.
SUMMARY OF THE INVENTION
The present invention was conceived and reduced to practice by the need to produce commercial quantities of infective baculovirus OB. The present invention was conceived by identifying the advantage of producing occlusion bodies with infectious baculovirus in caterpillar larvae and large numbers of viral particles with serial passages in cell culture. A two step method was then developed by initially producing infectious virus in caterpillar larvae and then using the resultant infectious virus as an inoculum for a limited number of serial passages in cell culture so to produce large amounts of infectious baculovirus.
In one aspect the present invention resides in a method of producing large quantities of baculovirus including

inoculating caterpillar larvae with a baculovirus inoculum;
incubating inoculated caterpillar larvae;
harvesting baculovirus occlusion bodies from the infected caterpillar larvae;
extracting occlusion derived virus from the occlusion bodies;
inoculating a culture of host insect cells with an inoculum of occlusion derived virus;
incubating virus/cell culture; and
harvesting baculovirus from the incubated virus/cell culture.
The incubation of the virus/cell culture is preferably for a period of time that enables four or five passages of baculovirus.
Baculovirus is used in the specification as a general term encompassing different baculovirus species including Helicoverpa armigera SNPV, Helicoverpa zea SNPV, Spodoptera frugiperda MNPV, Anticarsia gemmatalis MNPV, Autographa californica MNPV, Anagrapha falcifera MNPV, Lymantria dispar MNPV, Bombyx mori MNPV, Spodoptera exigua MNPV, Trichoplusia ni MNPV, Orgyia pseudotsugata MNPV and Buzura suppressaha SNPV. A preferred baculovirus is a Helicoverpa armigera isolate. A preferred Helicoverpa armigera isolate is strain H25EA1.
The original baculovirus inoculum may be derived from any suitable source including occlusion bodies from larvae or cell culture.
There may be more than one step of producing baculovirus from larvae in order to produce a suitable amount of occlusion bodies working stock. In one preferred form, baculovirus may be produced from larvae in an initial step to form an occlusion bodies master stock. The occlusion bodies master stock may then be used to provide inoculum for the production of occlusion bodies working stocks. In a preferred form, an occlusion bodies working stock preferably has approximately

2x1012 occlusion bodies whereas occlusion bodies master stock has approximately 109 occlusion bodies. Both the master stock and working stock may be stored at 4 degrees Celsius or frozen.
Preferably the occlusion derived virus (ODV) is inoculated in the cell culture at a relatively high MOI. In a preferred embodiment, an inoculum of occlusion derived virus is obtained from as low as 2.5x1010 occlusion bodies and introduced into a ten litre bioreactor containing 5x105 cells per ml. The culture is progressively scaled up from a 10 litre volume (P1) to a 100 litre volume (P2), then to a 1,000 litre volume (P3) and finally a 10,000 litre volume (P4). The 10 litre culture produces approximately 107 PFU (Baculovirus) per ml. The 10,000 litre culture preferably has an approximate cell density between 1.5-2.0 x109 cells per litre and a 2.5x1011 OB per litre (which is approximately 150 OB per cell). The OB have a LC50 against heliothis caterpillars of 0.2-1.0 OB per mm2.
The extraction of the occlusion derived virus from the working stock may occur by any suitable method. Occlusion derived virus is preferably extracted using alkali to lyse the occlusion bodies and the resultant viral particles are stabilized in an appropriate buffering media. The preferred method of extraction includes mixing an alkaline solution with an OB suspension and incubating the mixture for a period of time and at a temperature that separates the viral particles. The ODV are then preferably suspended in a stabilizing media preferably VPM3 (disclosed in Figure 2). Preferably no acid neutralization step is included. The preferred ODV extraction method is the VPM3 extraction method outlined below. The VPM3 extraction method has the advantages that it does not use a trypsin treatment and VPM3 media does not contain serum thus making the method more economical than the


conventional methods and therefore more suitable for large scale commercial production.
In another aspect the invention broadly resides in the Baculovirus product produced from the above mentioned method. The Baculovirus product is characterized by being the amount of infectious baculovirus of approximately 2.5x1015 OB with a LC50 against Helicoverpa spp caterpillars of 0.2-1.0 OB per mm2. This quantity of infectious Baculovirus has not previously been obtainable from a single in vitro method of production. A further advantage is that this quantity of infectious Baculovirus is economically producible.
The resultant Baculovirus can be used for a variety of purposes including as a biopesticide. By way of example Helicoverpa armigera OB can be applied to crops at 5x1011 to 5x1012 OB per Ha to ensure control of the H. armigera caterpillar pest.
BRIEF DESCRIPTION OF THE DRAWINGS
In order that the present invention be more readily understood and put into practical effect, reference will now be made to the accompanying drawings wherein:
Figure 1 is a diagrammatic representation of the method of producing large amounts of Baculovirus;
Figure 2 shows the formulation of the extraction stabilization media VPM3 of the preferred embodiment;
Figure 3 compares the number OB used for extraction and resultant OB per cell at passage 4; and
Figure 4 shows the OB yield over 4 passages using two samples (flasks A and B).
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DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENT
The preferred embodiment of the method for producing large quantities of baculovirus involves a two step process of initially producing virus in caterpillar larvae and then using occlusion derived virus from a caterpillar larvae to inoculate a cell culture and allow a limited number of serial passages of the cell culture (see Figure 1).
The method initially involves preparing master and working stocks of caterpillar larvae occlusion bodies. The master and working stocks of caterpillar OB are prepared by feeding large Helicoverpa armigera larvae approximately 1,000 OB each. As they die (6-10 days post infection) they are collected and stored at 4°C. Approximately 1.5-2 larvae are required for a 10 litre (passage 1) inoculum as 2.5x1010 OB are required per run and approximately 1.7x1010 OB are produced per larvae. After a sufficient number of dead caterpillars are pooled, they are extracted with SDS (30 minutes, 0.5% final concentration), homogenized (blender process), filtered (cheesecloth), spun down and suspended in water (1010OB/ml). A number of water washes can be carried out to help remove excess debris. The OB suspension can be stored refrigerated or frozen.
The OB are extracted using the VPM3 extraction method which includes the steps of adding 40ul of alkaline solution (0.5M Na2C03,1M NaCI) for each 0.7ml OB suspension (1010OB/ml), the mixture is well mixed and incubated at 28°C for 30 minutes. The incubated OB mixture is then diluted with 10 ml of VPM3 media for each 0.74 ml of extracted OB (see Figure 2 for formulation of VPM3). The diluted ODV suspension is then filter sterilized through a 0.22pm filter. The resultant ODV suspension is then used as inoculum.
8

Figure 3 shows examples of yields of OB per cell used for extraction and resultant yield of OB per cell at passage 4.
Approximately 2.5x1010 OB are required to produce enough ODV for use as an inoculum to infect a 10 litre culture (5x105 cells/ml).
The baculovirus inoculated 10 litre culture was aerobically incubated in a bioreactor at 28°C for approximately 3 days. The incubation is passage 1. The fermentation was gradually scaled up so that passages 2, 3 and 4 were 100 litres, 1,000 litres and 10,000 litres respectively. All the incubations were aerated at 28°C for approximately 2 days, except the final incubation which was for 10 - 15 days.
The 10,000 litre culture has an approximate cell density between 1.5-2.0 x109 cells per litre and 2.5x1011 OB per litre (which is approximately 150 OB per cell). The OB had a LC50 against Helicoverpa spp caterpillars of 0.2-1.0 OB per mm2.
In a further example shown in Figure 4, 1011 OB were successfully extracted and filtered. The filtered sterilized extraction was sampled to infect duplicate 100ml cultures (flasks A and B). The OB yields after passage 4 (10,000 litre culture) were relatively high with 263 and 239 OB per cell obtained from flasks A and B respectively.
VARIATIONS
It will of course be realised that while the foregoing has been given by way of illustrative example of this invention, all such and other modifications and variations thereto as would be apparent to persons skilled in the art are deemed to fall within the broad scope and ambit of this invention as is herein set forth.

Throughout the description and claims this specification the word "comprise" and variations of that word such as "comprises" and "comprising", are not intended to exclude other additives, components, integers or steps.


WE CLAIM
1. A method of producing large quantities of baculovirus including
inoculating caterpillar larvae with a baculovirus inoculum;
incubating inoculated caterpillar larvae;
harvesting baculovirus occlusion bodies from the infected caterpillar larvae;
extracting occlusion derived virus from the occlusion bodies;
inoculating a culture of host insect cells with an inoculum of occlusion derived
virus;
incubating virus/cell culture; and
harvesting baculovirus from the incubated virus/cell culture.
2. A method of producing large quantities of baculovirus as claimed in claim 1 wherein the incubation of the virus/cell culture is for a period of time that enables four or five passages of Baculovirus.
3. A method of producing large quantities of Baculovirus as claimed in claim 1 or 2, wherein the Baculovirus is selected from any one of the following group: Helicoverpa armigera SNPV, Helicoverpa zea SNPV, Spodoptera frugiperda MNPV, Anticarsia gemmatalis MNPV, Autographa califomica MNPV, Anagrapha falcifera MNPV, Lymantria dispar MNPV, Bombyx mori MNPV, Spodoptera exigua MNPV, Trichoplusia ni MNPV, Orgyia pseudotsugata MNPV and Buzura suppressaria SNPV.
4. A method of producing large quantities of Baculovirus as claimed in any one of claims 1 to 3, wherein the baculovirus is a Helicoverpa armigera isolate.

5. A method of producing large quantities of Baculovirus as claimed in any one of the abovementioned claims, wherein there is more than one step of producing baculovirus from larvae in order to produce a suitable amount of occlusion bodies working stock.
6. A method of producing large quantities of Baculovirus as claimed in any one of the abovementioned claims, wherein the baculovirus are produced from larvae in an initial step to form an occlusion bodies master stock, the occlusion bodies master stock is then used to provide inoculum for the production of occlusion bodies working stocks.
7. A method of producing large quantities of Baculovirus as claimed in any one of the abovementioned claims, wherein an occlusion bodies working stock has approximately 2x1012 occlusion bodies whereas occlusion bodies master stock has approximately 109 occlusion bodies.
8. A method of producing large quantities of Baculovirus as claimed in any one of the abovementioned claims, wherein the occlusion derived virus (ODV) is inoculated in the cell culture at a relatively high MOI.
9. A method of producing large quantities of Baculovirus as claimed in any one of the abovementioned claims, wherein an inoculum of occlusion derived virus is obtained from as low as 2.5x1010 occlusion bodies and introduced into a ten litre bioreactor containing 5x105 cells per ml, the culture is then progressively scaled up


from a 10 litre volume (P1) to a 100 litre volume (P2), then to a 1,000 litre volume (P3) and finally a 10,000 litre volume (P4); wherein the 10 litre culture produces approximately 107 PFU (Baculovirus) per ml, the 10,000 litre culture has an approximate cell density between 1.5-2.0 x109 cells per litre and a 2.5x1011 OB per litre (which is approximately 150 OB per cell) and the OB has a LC50 against heliothis caterpillars of between 0.2-1.0 OB per mm2.
10. A method of producing large quantities of Baculovirus as claimed in any one of the abovementioned claims, wherein the occlusion derived virus is extracted using alkali to lyse the occlusion bodies and the resultant viral particles are stabilized in an appropriate buffering media.
11. A method of producing large quantities of Baculovirus as claimed in any one of the abovementioned claims, wherein the method of extraction includes mixing an alkaline solution with an OB suspension and incubating the mixture for a period of time and at a temperature that separates the viral particles, the ODV are then suspended in a stabilizing media; the ODV is extracted without the use of a trypsin treatment and without the use of serum in the VPM3 media.
12. A Baculovirus product produced from the method as claimed in any one of the proceeding claims.


13. A method of producing baculovirus is claimed as substantially herein described with forgoing description and drawings.
Dated this 5th day of May 2006.
Dr. Rajeshkumar H. Acharya Advocate & Patent Agent For and on Behalf of Applicant
14

ABSTRACT
The present invention is directed to a method for producing commercial quantities of Baculovirus using a combination of methods involving producing occlusion bodies with infectious baculovirus in caterpillar larvae and large numbers of viral particles with serial passages in cell culture. A two step method was developed by initially producing infectious virus in caterpillar larvae and then using the resultant infectious virus as an inoculum for a limited number of serial passages in cell culture so to produce large amounts of infectious baculovirus.

Documents:

519-mumnp-2006-abstract(granted)-(9-7-2009).pdf

519-mumnp-2006-abstract.doc

519-mumnp-2006-abstract.pdf

519-mumnp-2006-cancelled pages(19-11-2008).pdf

519-MUMNP-2006-CLAIMS(18-11-2008).pdf

519-mumnp-2006-claims(amanded)-(18-11-2008).pdf

519-mumnp-2006-claims(amanded)-(19-11-2008).pdf

519-mumnp-2006-claims(granted)-(9-7-2009).pdf

519-mumnp-2006-claims.pdf

519-mumnp-2006-correspondance-received.pdf

519-MUMNP-2006-CORRESPONDENCE(18-11-2008).pdf

519-mumnp-2006-correspondence(19-11-2008).pdf

519-mumnp-2006-correspondence(ipo)-(18-9-2009).pdf

519-mumnp-2006-correspondence(ipo)-(19-11-2007).pdf

519-mumnp-2006-description (complete).pdf

519-mumnp-2006-description(granted)-(9-7-2009).pdf

519-mumnp-2006-drawing(complete)-(8-5-2006).pdf

519-mumnp-2006-drawing(granted)-(9-7-2009).pdf

519-mumnp-2006-form 1(20-7-2006).pdf

519-mumnp-2006-form 18(27-10-2006).pdf

519-mumnp-2006-form 2(granted)-(9-7-2009).pdf

519-mumnp-2006-form 2(title page)-(granted)-(9-7-2009).pdf

519-mumnp-2006-form 26(5-5-2006).pdf

519-mumnp-2006-form 3(19-11-2008).pdf

519-mumnp-2006-form 3(5-5-2006).pdf

519-mumnp-2006-form 5(5-5-2006).pdf

519-mumnp-2006-form-1.pdf

519-mumnp-2006-form-2.doc

519-mumnp-2006-form-2.pdf

519-mumnp-2006-form-3.pdf

519-mumnp-2006-form-5.pdf

519-mumnp-2006-marked copy(19-11-2008).pdf

519-mumnp-2006-wo international publication report(19-11-2008).pdf


Patent Number 235624
Indian Patent Application Number 519/MUMNP/2006
PG Journal Number 37/2009
Publication Date 11-Sep-2009
Grant Date 09-Jul-2009
Date of Filing 08-May-2006
Name of Patentee THE UNIVERSITY OF QUEENSLAND
Applicant Address St Lucia, Brisbane, Queensland, 4072,
Inventors:
# Inventor's Name Inventor's Address
1 REID, Steven 92 Mingera Street, Mansfield, Brisbane, Queensland, 4122,
2 LUA, Linda 6 Conimbla Close, Parkinson, Brisbane, Queensland, 4115, Australia.
PCT International Classification Number C12N7/02
PCT International Application Number PCT/AU2004/001549
PCT International Filing date 2003-11-10
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 2003906171 2003-11-10 Australia