Title of Invention

"A COMPOUND OF DIHYDRO-BENZYL-OXYPYRIMIDINE"

Abstract The present invention relates to a compound of dihydro-benzyl-oxypyrimidine : X is -NK, wherein K is -H, -C1-4 alkyl, or C3-6 cycloalkyl; R is C1-4 alkyl C3-6 ycloalkyl, aryl, aryl-C1-4alkylene, or heterocycle; Y and Z are each independently -H, - C1-4 alkyl, or C3-6 cycloalkyl; R1 is C1-4 alkyl, halogen,-OW, or -SW, wherein W is -H, -CH3 or aryl; and R2, R3,R4 and R5 are each independnelty -H, C1-4 alkyl, halogen, -NO2, -OW, or -SW, wherein W is -H, -CH3, or aryl; Wherein aryl is a monocyclic, bicyclic or tricyclic carbon ring of upto 7 members in each ring, and at least one ring is aromatic; heterocycle is 5- to 7-membered monocyclic or 8- to 11-membered bicyclic ring, which is either saturated or unsaturated, and which consists of carbon atoms and from one to three heteroatoms selected from the group consisting of N,O, and S; or a pharmaceutically acceptable salt thereof.
Full Text The present invention is concerned with compounds which inhibit the reverse ', transcriptase encoded by human immunodeficiency virus (HIV) or pharmaceutically acceptable salts thereof and are of value in the prevention of infection by HIV, the treatment of infection by HIV and the treatment of the resulting acquired immune deficiency syndrome (AIDS). It also relates to pharmaceutical compositions containing the compounds and to a method of use of the present compounds and other agents for the treatment of AIDS arid viral infection by HIV.
BACKGROUND OF THE INVENTION
A retrovirus designated human immunodeficiency virus (HIV) is the etiological agent of the complex disease that includes progressive destruction of the immune system (acquired immune deficiency syndrome; AIDS) and degeneration of the central and peripheral nervous system.
Currently available drugs for AIDS therapy are divided into two groups: those that prevent infection of target cells [nucleoside (NRTIs) and non-nucleoside reverse transcriptase inhibitors (NNRTIs)], and those that prevent HIV-1-infected cells from yielding infectious viruses (protease inhibitors). Monotherapy with antiretroviral agents has shown limited effects, very likely due to the interplay of phenomena such as: high viral loads and multiplication rates of HIV, incomplete inhibition of viral replication and emergence of drug resistant mutants. For this reason, combination therapies with two or more drugs have been proposed for a more effective treatment of AIDS. Potent suppression of HIV replication over prolonged periods has been accomplished with regimens including reverse transcriptase and protease inhibitors, although on stopping therapies viraemia has rapidly reappeared. In the attempt to obtain better results, research is now focused on exploiting new targets and enhancing the activity of "old" drugs. Among the latter, NNRTs possibly endowed with better pharmacokinetic profiles, capability to inhibit clinically relevant mutants and, hopefully, to minimize HIV multiplication are being pursued.
Compounds of the present invention are dihydro-alkyloxy-benzyl-oxopyrimidines (DABOs) which potently inhibit HIV multiplication targeting reverse transcriptase without bioactivation.
BRIEF DESCRIPTION OF THE INVENTION Novel compounds of formula A:
(Formula Removed)as herein defined, are disclosed. These compounds are useful in the inhibition of HIV reverse transcriptase. the prevention of infection by HIV, the treatment of infection by HIV and in the treatment of AIDS, either as compounds, pharmaceutically acceptable salts (when appropriate), pharmaceutical composition ingredients, whether or not in combination with other antivirals, anti-infectives, immunomodulators, antibiotics or vaccines. Methods of treating AIDS, methods of preventing infection by HIV, and methods of treating infection by HIV are also disclosed.
DETAILED DESCRIPTION OF THE INVENTION AND PREFERRED EMBODIMENTS
This invention is concerned with the compounds of formula A described below, combinations thereof, or pharmaceutically acceptable salts thereof, in the inhibition of HIV reverse transcriptase, the prevention or treatment of infection by HIV and in the treatment of
the resulting acquired immune deficiency syndrome (AIDS). The compounds of this invention include those with structural formula A:

(Formula Removed)wherein:
X is -0, -CH3, -CHK (wherein K is -H, -C1 alkyl, -C3-6Cycloalkyl), -S, -NK
(wherein K is -H, -Cl1-4alkyl, -C3-6cycloalkyl), -aryl, -arylalkyl;
R is -H, -C1-4alkyl (containing one or more of heteroatoms like 0, S, N), -C3-6,
cycloalkyl (containing one or more of heteroatoms like 0, S, N), -aryl, -arylakl, heterocycle;
Yis -H,-C1,4alkyl,-C3-6cycloalkyl;
Z is -H, -C1-4alkyl, -C3-6cycloalkyl;
R1 is -H, -C1-4alkyl, -halogen, -NO2, -OW (wherein W is -H, -CH3, aryl), -SW
(wherein W is -H, -CH3, -aryl);
R2 is -H, -C1-4alkyl, -halogen, -NO2, (wherein W is -H, -CH3 -aryl); -SW
(wherein W is -H, -CH3, -aryl);
R3 is -H, -C1-4alkyl, -halogen, -NO2, -OW (wherein W is -H, -CH3, -aryl); -SW
(wherein W is -H, -CH3, -aryl)
R4 is -H, -C1-4alkyl, -halogen, -NO2, -OW (wherein W is -H, -CH3, -aryl); -SW
(wherein W is -H, -CH3,-aryl)
R5 is -H, -C,.4alkyl, -halogen, -NO2, -OW (wherein W is -H, -CH3, -aryl), -SW
(wherein W is -H, -CH3, -aryl);
pharmaceutically acceptable salts or soluble derivatives thereof; preparation process of derivatives thereof;
a method of preventing infection of HIV, or of treating infection by HIV or of treating AIDS, comprising administering to a mammal an effective amount of compounds claimed;
a pharmaceutical composition useful for inhibition HIV reverse transcriptase, comprising an effective amount of compounds claimed, and a pharmaceutically acceptable carrier;
a pharmaceutical composition useful for preventing or treating infection of HIV or for treating AIDS, comprising an effective amount of compounds claimed, and a pharmaceutically acceptable carrier.
The most preferred compounds of this invention are those of table 1. The compounds of the present invention may have asymmetric centers and occur as racemates, racemic mixtures, individual diastereomers, or enantiomers, with all isomeric forms being included in the present invention.
When any variable occurs more than one time in any constituent or in formula A of this invention, its definition on each occurrence is independent of its definition at every other occurrence. Also, combinations of substituents and/or variables are permissible only if such combinations result in stable compounds.
as used herein except where noted, "alkyl" is intended to include both branched and straight-chain saturated aliphatic hydrocarbon groups having the specified number of carbon atoms; "Halogen" or "Hal" as used herein means fluoro, chloro, bromo and iodo.
as used herein, with exceptions as noted, "aryl" is intended to mean any stable monocyclic, bicyclic or tricyclic carbon ring of up to 7 members in each ring, wherein at least one ring is aromatic. Examples of such aryl elements include phenyl, naphthyl, tetrahydronaphthyl, biphenyl.
In accordance with the present invention it relates to a compound of dihydro-benzyl-oxypyrimidine:
The pharmaceutically-acceptable salts of the novel compounds of this invention that are capable of salt formation (in the form of water- or oil- soluble or dispersible products) include the conventional non-toxic salts or the quaternary ammonium salts of these compounds, which are formed, e.g.; from inorganic or organic acids or bases.
In preferred embodiments, a compound of the present invention is administered in
combination or alternation with AZT, D4T, FTC (2'.3'-dideoxy-3'-thia-5-fluorocytidme);
3TC (Epivir, Glaxo Wellcome, Inc.), AZDU (3'-Azido-2',3'-dideoxyuridine); 141W94
(amprenavir. Glaxo Wellcome, Inc.); Viramune (nevirapine), Rescriptor (delavirdine); or
DMP-266 (efavirenz). Other examples of antiviral agents that can be used in combination or
alternation with the compounds disclosed herein for HIV therapy include DDI, DDC,
Delaviridine, (3-LddA, |3-L-3'-azido-d5FC, carbovir, acyclovir. interferon, stavudine, CS-92
(3'-azido-2\3'-dideoxy-5-rnethyl-cytidine), 3'-azido nucleosides, and (i-D-dioxolane !
nucleosides such as p-D-dioxolanylguanine (DXG), (3-D-dioxolanyl-2,6-diaminopurine
(DAPD), and p-D-dioxolanyl-6-chloropurine (ACP). •
Preferred protease inhibitors include indinavir ({l(l,S,2R),5(S)]-2,3,5-trideoxy-N-(2.3-dihydro-2-hydroxy-lH-inden-l-yl)-5-[2-[[(l,l-dimethylethyl)amino]carbonyl]-4-(3-pyridinylmethyl)-l-piperazinyl]-2-(phenylmethyl)-D-erythro-pentoamidesulfate; Merck), nelfinavir (Agouron), ritonavir (Abbot), and saquinavir (Invirase; Roche).
Nonlimiting examples of other compounds that can be administered in combination or alternation with the compounds of the present invention to augment the properties of the drug on administration include abacavir: (lS,4R)-4-[2-amino-6-cyclopropyl-amino)-9H-purin-9-yl]-2-cyclopentene-l-methanol succinate (1592U89, a carbovir analog; Glaxo Wellcome); zidovudine: AZT, 3'-azido-3'-deoxythymidine (Glaxo Wellcome); BILA1906: N-{lS-[[[3-[2S- {(1,1 -dimethy lethy l)amino]carbonyl} -4R-]3-pyridiny lmethyl)thio]-l -piperidiny 1]-2R-hydroxy-lS-(phenylmethyl)propyl]amino]carbonyl]-2-methylpropyl}-2-quinolinecarboxamide (Bio Mega/Boehringer-Ingelheim); BILA 2185: N-(l,l-dimethylethyl)-l-[2S-[[2-2,6-dimethylphenoxy)-l-oxoethyl]amino]-2R-hydroxy-4-phenylbutyl]4R-pyridinylthio)-2-piperidinecarboxamide (Bio Mega/Boehringer-Ingelheim); BM+51.0836:triazoloisoindolinone derivative; BMS 186,318: aminodiol derivative HIV-1 protease inhibitor (Bristol-Myers-Squibb); d4API: 9-[2,5-dihydro-5-(phosphonomethoxy)-2-furanel]adenine (Gilead); stavudine: d4T, 2',3'-didehydro-3'-deoxythymidine (Bristol-Myers-Squibb); efavirenz: DMP-266, a l,4-dihydro-2H-3, l-benzoxazin-2-one; HBY097: S-4- '
isoprbpoxycarbonyl-6-methoxy-3-(methylthio-methyl)-3,4-dihydroquinoxalin-2(lH)-thione; HEPT: l-[(2-hydroxyethoxy)methyl]6-(phenylthio)thymine; KNI-272: (2S,3S)-3-amino-2-hydroxy-4-phenylbutyric acid-containing tripeptide; L-697,593; 5-ethyl-6-methyl-3-(2-phthalimido-ethyl)pyridin-2(lH)-one; L-735,524: hydroxy-aminopentane amide HIV-L protease inhibitor (Merck); L-697,661: 3-{[(-4,7-dichloro-l,3-benzoxazol-2-yI)methyl]amino}-5-ethyl-6-methylpyridin-2(lH)-one; L-FDDC: (-)-(3-L-5-fluoro-2',3'-dideoxycytidine; L-FDOC: (-)-(3-Lo-fluoro-dioxolane cytosine; 6-benzyl-l-ethoxymethyl-5-isopropyluracil (I-EBU; Triangle/Mitsubishi); nevirapine: 1 l-cyclopropyl-5,ll-dihydro-4-methyl-6H-dipyridoI[3,2-b:2',3'-e]diazepin-6-one (Boehringer-Ingelheim); PFA: phosphonoformate (foscaraet; Astra); PMEA: 9-(2-phosphonylmethoxyethyl) adenine (Gilead); PMPA: (R)-9-(2-phosphonyi-methoxyprop.yi)adenine (Gilead); Ro 31-8959: hydroxythethylamine derivative HIV-1 protease inhibitor (Roche); RPI-3121: peptidyl
protease inhibitor, l-[(3s)-3-(n-alpha-benzyloxycarbonyl)-l-asparginyl)-amino-2-hydroxy-4-phenylbutyryl]-n-tert-butyl-l-proline amide; 2720: 6-chloro-3,3-dimethyl-4-
(isopropenyloxycarbonyl)-3,4-dihydro-quinoxalin-2(lH)thione;SC-52151: hydroxyethylurea isostere protease inhibitor (Searle); SC-55389A: hydroxyethyl-urea isostere protease inhibitor (Searle); TIBO R82150: (+)-(5S)-4,5,6,7-tetrahydro-5-methyl-6-(3-methyl-2-butenyl)imidazo[4r5,l-jk][l,4]-benzodiazepin-2(lH)-thion«r(Janssen); TIBO 82913: (+)-(5S)-4,5,6,7,-tetrahydro-9-chloro-5-rnethyl-6-(3-methyl-2-butenyl)imidazo[4,5,ljk]-[1.4]benzodiazepin-2(lH)-thione (Janssen); TSAO-m3T:[2',5'-bis-0-(tert-butyldimethylsilyl)-3'-spiro-5>-(4>-amino-l'^'-oxathiole-2',2>-dioxide)]-p-D-pentofuranosyl-N3-methylthymine; U90152: l-[3-[(l-methylethyl)-amino]2-pyridinyl]-4-[[5-[(methylsulphcnyl)-amino]-lH-indol-2yl]carbonyl]piperazine; UC: thiocarboxanilide derivatives (Uniroyal); UC-781 =N-[4-chloro-3-(3-methyl-2-butenyloxy)phenyl]-2-methyl-3-furancarbothioamide; UC-82 = N-[4-chloro-3-(3-methyl-2-butenyloxy)phenyl]-2-methyl-3-thiophenecarbothioamide; VB 11,328: hydroxyethylsulphonamide protease inhibitor (Vertex); VX-478: amprenavir, 141W94, hydroxyethylsulphonamide protease inhibitor (Vertex/Glaxo Wellcome); XM 323: cyclic urea piotease inhibitor (Dupont Merck), delaviridine (Pharmacia Upjohn), famciclovir, gancyclovir, and penciclovir. In another embodiment a compound of the present invention is administered in combination with LG1350, which has the following structure.
(Formula Removed)
Preparation Of Methvl Arvlacetvlalkvlacetates
SCHEME A
(Scheme Removed)Anhydrous .pyridine (400 mmoles, 32.5 mi) was added with stirring under nitrogen atmosphere into an ice-cooled solution of 2,2-dimethyl-l,3-dioxane-4,6-dione (Meldrurm's acid) (165 mmoles, 23.75 g) in anhydrous dichloromethane (50 ml). The resulting solution was treated, over a 2 h period at 0°C under nitrogen atmosphere, with a solution of crude arylacetyl chloride in anhydrous dichloromethane (50 ml). Arylacetyl chloride was prepared before use by refluxing the proper arylacetic acid (43.2 mmoles) with thionyl chloride (21.3 ml) under nitrogen atmosphere for 2 h. Then, the mixture was stirred for 2 h at room temperature, poured into crushed ice and treated with 2N HC1 (100 ml). The organic layer was separated and the aqueous solution was extracted twice with dichloromethane (25 ml). The organic phase and the extracts were combined, washed with brine, dried and evaporated. The solid residue was dissolved in anhydrous methanol (250 ml1* and the solution was refiuxed for 20 h. After cooling, metal sodium (0.16 g-atoms, 3.68 g) was carefully added and the mixture was stirred until dissolution was complete. Alkyl halide (160 mmoles) was dropped into the solution and the resulting mixture was heated at reflux for 4-12 h. After cooling, the solvent was removed and the residue treated with water (200 ml) and extracted with chloroform (3 x 100 ml). The organic layer was washed with brine (2 x 100 ml), dried and evaporated to give the desired compound, which was purified by passing through a silica gel column (chloroform as eluent).
In the above reaction, arylacetic acid (Scheme "A") or arylacetyl chloride can be replaced with the corresponding l-arylace^tylimidazolide (Scheme "B") or with arylacetylethoxycarbonylanhydride. whereas the Meldrum's acid can be replaced with ethyl acetylacetate, ethyl alkylmalonate or ethyl alkylmalonate potassium salt, to give the proper ethyl arylacetylalkylacetates in high yields.
Preparation Of Compounds (I) With X = Q (Scheme AV
The proper methyl arylacetylalkylacetate (10 mmoles) in methanol (50 ml) was added to a well-stirred suspension of 0-methylisourea hydrogen sulphate (15 mmoles, 2.58 g) and calcium hydroxide (16 mmoles, 1.18 g) in water (50 ml). The resulting mixture was stirred at room temperature for 72 h, then concentrated, made acid (pH 5) with 0.5N acetic acid and extracted with ethyl acetate (3 x 50 ml). The combined organic extracts were washed with brine (100 ml), dried and evaporated to dryness. The residue was purified by crystallization
from the proper solvent yielding pure 5-alkyl-6-benzyl-3,4-dihydro-2-methoxypyrimidin-4-one. This compound was then refluxed with the proper potassium alkoxide (100 mmoles of potassium metal in 20-30 ml of alcohol freshly distilled on sodium metal) under nitrogen atmosphere until starting material disappeared at the TLC control. After cooling, the mixture was concentrated, made acid (pH 5) with 0.5N acetic acid and extracted with ethyl acetate (3 x 50 ml). The combined extracts were washed once with brine (100 ml), dried and evaporated to give the required 2-alkoxy-5-alkyl-6-benzyl-3,4-dihydropyrimidin-4-one derivative, which was recrystallized from a suitable solvent or purified by column chromatography (silica gel; ethyl acetate:chloroform 1:1). Physical and chemical data of representative compounds of the invention are reported in table 1; cytotoxicity and anti-HIV-1 activity data are reported in table 2.
SCHEME B
Preparation Of Compound (T) With X = S

(Scheme Removed)
The proper ethyl arylacetylalkyiacetate (31.5 mmoles) was successively added to a stirred solution of sodium metal (0.063 g-atoms) in 50 mL of absolute ethanol (50 ml) thiourea (43 mmoles). The mixture was heated while stirring at reflux for 5 h. After cooling, the solvent was distilled in vacua at 40-50°C until dryness and the residue was dissolved in water (200 mL) and made acid (pH 5) with 0.5N acetic acid. The resulting precipitate (the crude 2-thiouraciI derivative) was filtered under reduced pressure, washed with diethyl ether, vacuum dried at 80°C for 12 h and then crystallized from the proper solvent.
Then, according to method A, iodomethane (8 mmoles, 1.13 g) was added to a suspension containing the proper 2-thiouracil derivative (4 mmoles) in anhydrous N,N-dimethylformamide (2 ml), and the resulting mixture was stirred at room temperature until the starting material disappeared at the TLC control (silica gel; n-hexane: ethyl acetate: methanol 12:3:1). Then the reaction content was poured on cold water (100 mL) and extracted with ethyl acetate (3 x 50 ml). The organic layers were collected, washed with a sodium thiosulfate solution (100 ml), brine (3 x 50 ml), dried and evaporated to furnish the crude 5-alkyl-6-benzyl-3,4-dihydro-2-methylthiopyrimidin-4-one (2) as a solid purified by crystallization.
Alternatively, according to methods B and C, potassium carbonate (4.2 mmoles) and the proper alkyl halide (4.4 mmoles) were added to a suspension containing 2-thiouracil derivative (4 mmoles) in anhydrous N,N-dimethy lformami.de (2 ml). The resulting mixture was stirred at room temperature (method B) or at 80° C (method C) until starting material disappeared at the TLC control (silica gel; n-hexane:ethyl acetate:methanol 12:3:1). Then the reaction content was poured on cold water (200 mL), made acid (pH 5) with 0.5N acetic acid and extracted with ethyl acetate (3 x 50 ml). The organic layers were collected, washed with a sodium thiosulfate solution (100 ml), brine (100 ml), dried and evaporated to furnish 5-alkyl-6-benzyl-3,4-dihydro-2-methylthiopyrimidin-4-ones (3) and (4) as crude material which was then purified by column chromatography on silica gel (eluent: n-hexane:ethyl acetate:methanoM2:3:l) followed by crystallization. Physical and chemical data of representative compounds of the invention are reported in table 1. Cytotoxicity and anti-Hi V-l activity in vitro are reported in table 2.
Preparation Of Compounds (I) With X = NK
SCHEME C

(Scheme Removed)
Title derivatives were prepared according to the procedure described for the synthesis of compounds with X = S (I), using ethyl arylacetylalkylacetates and guanidine [2-amino-6-benzylpyrimidin-4-ones (5)] as starting materials. 2-Alkylaminoderivatives (6) were synthesized by heating the previously reported 5-alkyl-6-benzyl-3.4-dihydro-2-methylthio pyrimidin-4-ones with 20-30 ml of proper amine in a sealed tube at 170°C for 24 h. Physical and chemical data of some compounds (6) are reported in table 1. Cytotoxicity and anti-HIV-l activity in vitro are reported in table 2. The compounds of the present invention are useful in the inhibition of HIV reverse transcriptase, the prevention or treatment of infection by the . human immunodeficiency virus (HIV) and the treatment of consequent pathological conditions such as AIDS. Treating AIDS or preventing or treating infection by HIV is defined as including, but not limited to, treating a wide range of states of HIV infection: AIDS, ARC (AIDS related complex), both symptomatic and asymptomatic, and actual or potential exposure to HIV. For example, the compounds of this invention are useful in treating infection by HIV after suspected past exposure to HIV by, e.g., blood transfusion, organ transplant, exchange of body fluids, bites, accidental needle stick, or exposure to patient blood during surgery.
The compounds of this invention are also useful in the preparation and execution,of screening for antiviral compounds. For example, the compounds of this invention are useful for isolating enzyme mutants, which are excellent screening tools for more powerfulantiviral compounds. Furthermore, the compounds of this invention are useful in establishing or determining the binding site of other antiviral to HIV reverse transcriptase e.g., by competitive inhibition. Thus the compounds of this invention are commercial products to be sold for these purposes. For inhibitibn of HIV reverse transcriptase, the prevention or treatment of infection by HIV and the treatment of AIDS or ARC, the compounds of the present invention may be administered orally, parenterally (including subcutaneous injections, intravenous, intramuscular, intrasternal injection or infusion techniques), by inhalation spray, or rectally, in dosage unit formulations containing conventional non toxic pharmaceutically-acceptable carriers, adjuvants and vehicles. Thus, in accordance with the present invention there is further provided a method of treating and a pharmaceutical composition for treating HIV infection and AIDS. The treatment involves administering to a patient in need of such treatment a pharmaceutical composition comprising a pharmaceutical carrier and a therapeutically effective amount of a compound of the present invention. These
pharmaceutical compositions may be in the form of orally administrable suspensions or tablets; nasal sprays; sterile injectable preparations, for example, as sterile injectable aqueous or oleagenous suspensions or suppositories.
When administered orally as a suspension, these compositions are prepared according to techniques well-known in the art of pharmaceutical formulation and may contain microcrystalline cellulose for imparting bulk, alginic acid or sodium alginate as a suspending agent, methylcellulose as a viscosity enhancer, and sweetners/flavoring agents known in the art. As immediate release tablets, these compositions may-contain microcrystalline cellulose, dicalcium phosphate, starch, magnesium stearate and lactose and/or other excipients. binders, extenders, disintegrants, diluents and lubricants known in the art.
When administered b.y nasal aerosol or inhalation, these compositions are prepared, according to techniques well-known in the art of pharmaceutical formulation and.may be prepared as solutions in saline, employing benzyl alcohol or other suitable preservatives, absorption promoters to enhance bioavailability, fluorocarbons, and/or other solubilizing or dispersing agents known in the art.
The injectable solutions or suspensions may be formulated according to known art, using suitable non toxic, parenterally acceptable diluents or solvents, such as mannitol, 1,3-butanediol, water. Ringer's solution or isotonic sodium f.-hloride solution, or suitable dispersing or wetting and suspending agents, such as sterile, bland, fixed oils, including synthetic mono-or diglycerides, and fatty acids, including oleic acid.
When rectally administered in the form of suppositories, these compositions may be prepared by mixing the drug with a suitable non-irritating excipient; such as cocoa buffer, synthetic glyceride, esters or polyethylene glycols, which are solid at ordinary temperatures, but liquidity and/or dissolve in the rectal cavity to release the drug.
The compounds of this invention can be administered orally to humans in a dosage range of 1 to 75 mg/kg body weight. One preferred dosage range is 1 to 50 mg/kg body weight orally. Another preferred dosage range is 5 to 75 mg/kg body weight orally. It will be understood, however, that the specific dose level and frequency of dosage for any particular patient may be varied and will depend upon a variety of factors including the activity of the specific compound employed, the metabolic stability and length of action of that compound, the age, body weight, general health, sex, diet, mode and time of administration, rate of
excretion, drug combination, the severity of the particular condition, and the host undergoing therapy.
The present invention is also directed to combinations of the HIV reverse transcriptase inhibitor compounds with one or more agents useful in the treatment of AIDS. The compounds of this invention can be administered in combination with other compounds that are HIV reverse transcriptase inhibitors, and/or with compounds that are HIV protease inhibitors. When used in a combination treatment vith compounds of the instant invention, dosage levels of HIV protease inhibitors of the order of 1 to 25 or 50 grams-per-day are useful in the treatment or prevention of the above-indicated conditions, with oral doses two-to-five time higher. For example, infection by HIV is effectively treated by the administration of from 5 to.25 •milligrams of the HIV protease inhibitor per kilogram of body weight from one to three times per day,
It will be understood, however, that the specific dose level and frequency of dosage for any particular patient may be varied and will depend upon a variety of factors including * the activity of the specific compound employed, the metabolic stability and length of action of that compound, the age, body weight, general health, sex, diet, mode and time of administration, rate of excretion, drug combination, the severity of the particular condition, and the host undergoing therapy. Dosages of HTV revecse transcriptase inhibitors, when used in a combination treatment with compounds of the present invention, are comparable to those dosages specified above for the present compounds. It will be understood that the scope of combinations of the compounds of this invention with AIDS antivirals includes any combination with any pharmaceutical composition useful for the treatment of AIDS.
ANTIVIRAL ASSAY PROCEDURES
Compounds. Compounds were solubilized in DMSO at 200 mM and then diluted into culture medium.
Cells and viruses. MT-4, C8166, H9/IIIB and CEM cells were grown at 37 °C in a 5% CO2 atmosphere in RPM! 1640 medium, supplemented with 10% fetal calf serum (PCS), 100 lU/mL penicillin and 100 ug/mL streptomycin. Cell cultures were checked periodically for the absence of mycoplasma contamination with a MycoTect Kit (Gibco). Human
immunodeficiency virus type-1 (HIV-1, IIIB strain) was obtained from supernatants of ' persistently infected H9/IIIB cells. HIV-1 stock solution had a litres of 4.5x10" 50% cell culture infectious dose (CCID50)/ml.
HIV titration. Titration of HIV was performed in C8166 cells by the standard limiting dilution method (dilution 1:2, four replica wells per dilution) in 96-well plates. The infectious virus litre was determined by light microscope scoring of cytopathicity after 4 days of incubation and the virus titres were expressed as CCID50/mL.
Anti-HIV assays. Activity of the compounds against HIV-1 and HIV-2 multiplication in acutely .infected cells was based on the inhibition of virus-induced cytopathicity in MT-4 and C8166 cells, respectively. Briefly, 50 uL of culture medium containing lxlOJ cells were added to each well of flat-bottom microtiter trays containing 50 ul of culture medium with or without various concentrations of the test compounds. Then 20 µL of an HIV suspension . containing 100 CCID50, were added. After a 4-day incubation at 37 °C, the number of viable cells was determined by the 3-(4,5-dimethylthiazol-l-yl)-2.5-diphenyltetrazolium bromide (MTT) method. Cytotoxicity of the compounds was evaluated in parallel with their antiviral activity. It was based on the viability of mock-infected cells, as monitored by the MTT method.
RTassays. Assays were performed as follows. Briefly, purified rRT was assayed for its RNA-dependent polymerase-associated activity in a 50 uL volume containing: 50 mM TrisHCl (pH 7.8), 80 mM KCI1, 6mM MgC12,1 mM DTT. 0.1 mg/ mL BSA, 0.3 OD2N, unit/mL template:primer [poly(rC)-oligo(dG)12-18] and 10 µM [3H]dGTP (1 Ci/mmol). After incubation for 30 min at 37 °C, the samples were spotted on glass fiber filters (Whatman GF/A), and the acid-insoluble radioactivity was determined.
EXAMPLES
2-Cyclopentylthio-6-(2.6-difluorophenylmethyl)-3.4-dihydrogyrimidin-4-(3H)-one (MC867). A mixture of 6-(2,6-difluorophenyImethyl)-L2,3,4-tetrahydro-2-thiopyrimidin-4(3H)-one (0.16 g, 0.65 mmol; prepared as reported in scheme B), cyclopentyl bromide (0.11 g, 0.08 mL., 0.71 mmol) and potassium carbonate (0.09 g, 0.65 mmol) in 1 mL of anhydrous DMF was stirred at room temperature for 24 h. After treatment with cold water (200 mL), the solution was extracted with ethyl acetate (3 x 50 mL). The organic layers were collected, washed with brine (3 x 50 mL), dried and evaporated to furnish crude MC867, which was
purified by chromatography on silica gel column (eluent: n-hexane/ethyl acetate/methanol 12/3/1).
Yield (%): 45; mp (°C): 168-169; recrystallization solvent: cyclohexane; formula (molecula-weight): C16H,6F2N:OS (322.37).
2-Cyclopenlylthio-6-(2.6-difluorophenylmethyn-3.4-dihvdro-5-methylpyrimidin-4-(3H)one
(MC922)
The synthesis of MC922 was accomplished according to the above reported procedure
starting from 6-(2,6-difluorophenylmethyl)-5-methyl-l ,2.3.4-tetrahydro-2-thiopyrimidin-4-
(3H)-one (see scheme B).
Yield (%) 54; mp (°C): 192-193; recrystallization solvent: cyclohexape; formula (molecular
weight): C17H18F:N,OS (336.40).
2-Cyclopentylthio-6-[l-(2.6-difluorophenyl')ethyl]-3.4-dihydropyrimidin-4-(3H)-one
(MC1008)
The synthesis of MC1008 was accomplished according to the above reported procedure
starting from 6-[l-(2,6-difluorophenyl)ethyl]-l,2,3,4-tetrahydro-2-thiopyrimidin-4(3H)-one
(see scheme B).
Yield (%): 54; mp (°C): 165.5-166.5; recrystallization solvent: cyclohexane; formula
(molecular weight): C17Hi8F,N,OS (336.40).
2-Cyclopentylthio-6-[l-(2.6-difluorophenyl)ethyI]-3.4-dihydro-5-methylpyrimidin4(3/H)-one
(MC1047)
The synthesis of MC1047 was accomplished according to the above reported procedure,
starting from 6-[l-(2,6-difluorophenyl)ethyl]-5-methyl-l,2,3.4-tetrahydro-2-thiopyrimidin-
4(3H)-one (see scheme B).
Yield (%): 60; mp (°C): 196-197; recrystallization solvent: cyclohexane; formula (molecular
weight): C18H20F,N:OS (350.43).
-(2.6-Difluorophenylmethyl)3.4-dihydro-2-(methvlthiomethynthiopvrimidin-4-G/f)-one (MC1161)
The synthesis of MCI 161 was accomplished according to the above reported procedures, starting from 6-(2,6-difluorophenylmethyl)-l,2,3,4-tetrahydro-2-thiopyrimidin-4(3H)-one (see scheme B) and chloromethyl methyl sulfide.
Yield (%): 72; mp (°C): 159-160; recrystallization solvent: benzene/cyciohexane; formula (molecular weight): C13H12F2N2OS2 (314.37).
6-(2.6-Difluorophenylmethyl)-3.4-dihydro-5-methyl-2-(methylthiomethyl)thiopyrimidin-4(3m-one.(MC1162).
The synthesis of MCI 162 was accomplished according to the above reported procedure, ,starting from 6-(2,6-difluorophenylmethyl)-5-methyl-l,2,3,4-tetrahydro-2-thiopyrimidin 4(3//)-one (see scheme B) and chloromethyl methyl sulfide.
Yield (%): 70; mp (°C): 183-184; recrystallization solvent: benzene/cyciohexane; formula (molecular weight): C14H14F2N2OS, (328.39).
6-(2.6-Difluorophenylmethyl)-3.4-dihydro-5-(l-methylethyl)-2-(methylthiomethyl)
thiopyrimidin-4-(3H)-one MCI 145).
The synthesis of MC1145 was accomplished accordingtcrthe above reported procedure,
starting from 6-(2,6-difluorophenylmethyl)-5-(l-methylethyl)-1,2,3,4-tetrahydro-2-
thiopyrimidin-4(3H)-one (see scheme B) and chloromethyl methyl sulfide.
Yield (%): 62; mp (°C): 158.5-160; recrystallization solvent: cyclohexane; formula
(molecular weight): C16H18F2N,OS2 (356.45).
2-Cyclopenltylamino-6-(2.6-difluorophenylmethyl)-3.4-dihydropyrimidin-4-(3H)-one
(MC1022).
Cyclopentylamine (10 mL) was heated while stirring with 6-(2,6-difluorophenylmethyI)-3,4-
dihydro-2-methylthiopyrimidin-4-(3H)-one (0.30 g, 1.12 mmol; prepared as reported in
scheme B or C) in a sealed tube at 160°C for 10 h. After cooling, the mixture was diluted
with water (200 mL) and extracted with ethyl acetate (3 x 50 mL). The organic layers were
collected, washed with brine (3 x 50 mL), dried and evaporated to furnish crude MC1022,
Yield (%): 78; mp (°C): 233-234; recrystallization solvent: acetonitrile; formula (molecular weight): C15H15F2N3OS (323.36).
6-(2.6-DifluorophenylmethylY-3.4-dihydro-2-N,N-dimethylaminopyrimidin-4-(3H)-one (MC1182)
To a stirred solution of sodium metal (0.14 g, 6.3 mg-atoms) in absolute ethanol (50 mL) 1,1-dimethylguanidine sulfate (1.17 g, 4.3 mmol) and ethyl 4-(2,6-difluorophenyl)acetylacetate (0.76 g, 3.15 mmol) were successively added. The mixture was heated while stirring at reflux for 8 h. After cooling, the solvent was distilled in vacua at 40-50°C until dryness and the residue was dissolved in water (200 mL) and made acid (pH 5) with 0.5N acetic acid. The resulting precipitate (the crude isocytosine derivative) was filtered under reduced pressure, washed with diethyl ether, vacuum dried at 80°C for 12 h and then crystallized from benzene/cyclohexane (see scheme C starting from ethyl 4-(2,6-difluorophenyl)acetylacetate and replacing guanidine hydrochloride with 1,1-dimethylguanidine sulfate). Yield (%): 88; mp (°C): 210-211; recrystallization solvent: benzene/cyclohexane; formula (molecular weight): C,3H13F:N30 (265.26).

Table I. Physical and Chcmicul Dalit of MC Compounds(Table Removed)Table 2. Cylotoxicily and anti-IIIV-l Activily of MC Compounds (continued)

(Table Removed)" Data rcprcscnl mean values of al leasl two scparale experiments. ' Compound dose required lo reduce me viability of mock-infected cells by 50%, as
determined by the MMT metiiod. 'Compound dose required lo acllicvc 50% protection of MT-4 cells from IIIV-I induced cylopaihogcnicity, as dclcrmincd
by the MTT method. 'Selectivity index, CC 5I1/EC ,„ ratio.





















WE CLAIM:
1. A compound of dihydro-benzyl-oxypyrimidine:
(Formula Removed)Wherein:
X is -NK, wherein K is -H, -C1-4 alkyl, or C3-6 cycloalkyl;
R is C1-4 alkyl C3-6ycloalkyl, aryl, aryl-C1-4alkylene, or heterocycle;
Y and Z are each independently -H, - C1-4 alkyl, or C3-6 cycloalkyl;
R1 is C1-4 alkyl, halogen,-OW, or --SW, wherein W is -H, -CH3 or aryl; and
R2, R3,R4 and R5 are each independnelty -H, C1-4 alkyl, halogen, -NO2, -OW, or -SW, wherein W is -H, -CH3, or aryl;
Wherein aryl is a monocyclic, bicyclic or tricyclic carbon ring of upto 7 members in each ring, and at least one ring is aromatic; heterocycle is 5- to 7-membered monocyclic or 8- to 11-membered bicyclic ring, which is either saturated or unsaturated, and which consists of carbon atoms and from one to three heteroatoms selected from the group consisting of N,O, and S; or a pharmaceutically acceptable salt thereof.
2. The compound as claimed in claim 1 wherein K is -H or C1-4 alkyl.
3. The compound as claimed in claim 1 to 2, wherein R is C1-4 alkyl or C3-
6 cycloalkyl.
4. The compound as claimed in claims 1 to 3, wherein Y is C1-4 alkyl; Z is
C1-4 alkyl; R1 is halogen; R2, R3 and R4 are halogen; and R5 is
halogen.
5. The compound as claimed in claim 1, wherein
X=NH Y=H Z=CH3 R=cPen R1=F R2=H R3=H R4=H R5=F
X=NH Y=CH3 Z=CH3 R=cPen R1=F R2=H R3=H R4-H R5=F
X=NH Y=H Z=CH3 R=CH3 R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z=CH3 R=nPr R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z=CH3 R=iPr R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z=CH3 R=nBu R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z=CH3 R=sBu R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z=CH3 R=cHex R1=F R2=H R3=H R4=H R5=F
X=NH Y=CH3 Z=CHs R=CH3 R1=F R2=H R3=H R4=H R5=F
X=NH Y= CH3 Z=CH3 R=nBu R1=F R2=H R3=H R4=H R5=F or
X=NH Y= CH3 Z=CHa R=cHex R1=F R2=H R3=H R4=H R5=F
Wherein cPen is cyclopentyl, nPr is n-propyl, iPr is isopropyl, nBu is n-butyl, sBu is sec-butyl, and cHex is cyclohexyl.
6. The compound as claimed in claim 1 wherein
X=NH Y=H Z=CH3 R=Et R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z=CH3 R=nPr R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z= H R=iPr R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z= H R=cPen R1=F R2=H R3-H R4=H R5=F
X=NH Y=H Z= H R=nBu R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z= H R=sBu R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z= H R=MeOEt R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z= H R=cPen R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z= H R=cHex R1=F R2=H R3=H R4=H R5=F
X=NH Y=CH3 Z=H R=iPr R1=F R2=H R3=H R4=H R5=F
X=NH Y= CH3 Z= H R=sBu R1=F R2=H R3=H . R4=H R5=F
X=NH Y= CH3 Z= H R=cPen R1=F R2=H R3=H R4=H R5=F
X=NH Y= CH3 Z= H R=benz R1=F R2=H R3=H R4=H R5=F
X=NH Y=H Z= H R= CH3 R1=F R2=H R3=H R4=H R5=F
X=NH Y= CH3 Z= H R= CH3 R1=F R2=H R3=H R4=H R5=F
X=NH Y= CH3 Z= H R=nPr R1=F R2=H R3=H R4=H R5=F
X=NH Y= CH3 Z= H R-nBu R1=F R2=H R3=H R4=H R5=F
X=N Y=H Z= H R= (CH3 )2 R1=F R2=H R3=H R4=H R5=F
X=N Y=H Z=H R=Me-Pip R1=F R2=H R3=H R4=H R5=F
X=N Y=H Z= H R=Morph R1=F R2=H R3=H R4=H R5=F
X=^N Y=H Z= H R=S-Morph R1=F R2=H R3=H R4=H R5=F
X=N Y=H Z=H R=Piper R1=F R2=H R3=H R4=H R5=F
X=N Y=H Z=H R=Pyrroli R1=F R2=H R3=H R4=H R5=F
X=N Y=H Z=H R=Etz R1=F R2=H R3=H R4=H R5=F
X=N Y=H Z= H R= (nPr )2 R1=F R2=H R3=H R4=H R5=F
X=N Y= CHa Z= (CH3 )2 R=cPen R1=F R2=H R3=H R4=H R5=F
X=N Y= CH3 Z= H R=Me-Pip R1=F R2=H R3=H R4=H R5=F
X=N Y= CHs Z= H R=Morph R1=F R2=H R3=H R4=H R5=F
X=N Y= CH3 Z= H R=S-Morph R1=F R2=H R3=H R4=H R5=F
Wherein Et is ethyl, Me is methyl, cPen is cyclopentyl, cHex is cyclohexyl,
nPr is n-propyl, iPr is isopropyl, nBu is n-butyl, sBu is sec-butyl, benz is
benzyl, Me-Pip is methylpiperidinyl, Morph is morpholinyl, S-morph is
thiomorpholinyl, Piper is piperidinyl, and pyrroli is pyrrolidinyl.
7. The compound of dihydro-benzyl-oxypyrimidine substantially as herein described with reference to foregoing description, examples, tables and accompanying drawings.



Documents:

in-pct-2001-111-del-abstract.pdf

in-pct-2001-111-del-assignment.pdf

in-pct-2001-111-del-claims.pdf

in-pct-2001-111-del-correspondence-others.pdf

in-pct-2001-111-del-correspondence-po.pdf

in-pct-2001-111-del-description (complete).pdf

in-pct-2001-111-del-form-1.pdf

in-pct-2001-111-del-form-13.pdf

in-pct-2001-111-del-form-18.pdf

in-pct-2001-111-del-form-2.pdf

in-pct-2001-111-del-form-3.pdf

in-pct-2001-111-del-form-5.pdf

in-pct-2001-111-del-form-6.pdf

in-pct-2001-111-del-gpa.pdf

in-pct-2001-111-del-pct-210.pdf

in-pct-2001-111-del-pct-220.pdf

in-pct-2001-111-del-pct-304.pdf

in-pct-2001-111-del-pct-401.pdf

in-pct-2001-111-del-pct-408.pdf

in-pct-2001-111-del-pct-409.pdf

in-pct-2001-111-del-pct-416.pdf

in-pct-2001-111-del-petition-138.pdf


Patent Number 232600
Indian Patent Application Number IN/PCT/2001/00111/DEL
PG Journal Number 13/2009
Publication Date 27-Mar-2009
Grant Date 19-Mar-2009
Date of Filing 07-Feb-2001
Name of Patentee INDENIX (CAYMAN) LIMITED
Applicant Address C/O WALKERS SPV LIMITED, BOX 908-GT. WALKER HOUSE, 256 MARY STREET, GRAND CAYMAN, CAYMAN ISLANDS.
Inventors:
# Inventor's Name Inventor's Address
1 LA COLLA, PAOLO 5A, STRADA, 11, POGGIO DEI PINI, I-09012 CAPOTERRA, ITALY
2 ARTICO, MARINO VIA EDGARDO NEGRRI, 64,I-00128 ROMA ITALY.
PCT International Classification Number C07D 239/56
PCT International Application Number PCT/EP99/05134
PCT International Filing date 1999-07-19
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 CA98A000015 1998-07-17 Italy