Title of Invention

NUCLEIC ACID ADJUVANTS

Abstract The present invention relates to an adjuvant composition comprising: (i) a first nucleic acid sequence; (ii) a second nucleic acid sequence; and (iii) core carriers, wherein: (a) said first nucleic acid sequence encodes a 5' truncated bacterial ADP-ribosylating exotoxin A subunit, the truncation meaning that the subunit does not having an amino terminal bacterial signal peptide; (b) said second nucleic acid sequence encodes a 5' truncated bacterial ADP-ribosylating exotoxin B subunit, the truncation meaning that the subunit does not having an amino terminal bacterial signal peptide; (c) said first and second nucleic acid sequences are coated onto the same or different core carriers and are operably linked to, or are each operably linked to, a promoter active in mammalian cells; and (d) each of said truncated subunit coding regions encodes the subunit operably linked to a leader sequence for secretion from a mammalian cell.
Full Text wo 03/004055 PCT/USOl/43151
NUCLEIC ACID ADJUVANTS
Technical Field
The invention relates to the fields of molecular biology and immunology,
5 and generally relates to nucleic acid immunization techniques. More specincaliy,
the invention relates to polynucleotides encoding an adjuvant, and to immunization strategies employing sucholynucleocides.
Background
] 0 Techniques for the injection of DNA and mRNA into mammalian tissue
for the purposes of immunization against an expression product have been described in the art. The techniques, termed "nucleic acid immunization" herein, have been shown to elicit both humoral and cell-mediated immune responses. For example, sera from mice immunized with a DNA construct encoding the
15 envelope glycoprotein, gpl60, were shown to react with recombinant gpl60 in
immunoassays, and lymphocytes from the injected mice were shown to proliferate in response to recombinant gpI20. Wang et al, (1993) Proc. Nad, Acad. Sci USA 90:4156-4160. Similarly, mice immumzed with a human growth hormone (hGH) gene demonstrated an antibody-based immune response. Tang et
20 al. (1992) Nature 356:152-154. Intramuscular injection of DNA encoding
influenza nucleoprotein driven by a mammalian promoter has been shown to elicit a CDS+ CTL response that can protect mice against subsequent lethal challenge with virus. Ulmer et al. (1993) Science 259:1745-1749. Immunohistochemical studies of the injection site revealed that the DNA was
25 taken up by myeloblasts, and cvtoplasmic production of viral protein could be
demonsurated for at least 6 months.
Summary of the Invention
It is a primarv object of the invention to provide a polynucleotide adjuvant
30 composition containing furst and second nucleic acid sequences, wherein the first
nucleic acid secuence is a trucated A subunit coding region obtained or derived
1


from a bacterial ADP-ribosylating exotoxin, and the second nucleic acid sequence
is a truncated B subunit coding region obtained or derived from a bacterial ADP-
ribosylating exotoxin. Each of the truncated subunit coding regions has a 5'
deletion and encodes a subunit peptide not having an amino terminal bacterial
5 signal peptide.
The first and second nucleic acid sequences maybe present in the same or
in different nucleic acid constructs. The troncated subunit cod'lng regions may be
obtained or derived from the same bacterial ADP-ribosylating exotoxin and. in
cer.ain preferred embodiments, the bacterial .ADP-ribosylating exotoxin is a
10 cholera toxin (CT) or an E, coli heat labile enterotoxin (LT). In addition, at least
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one of the truncated subunit coding regions maybe genetically modified to detoxify the subunit peptide encoded thereby, for example wherem the tnmcated A submiit coding region has been genetically modified to disrupt or inacrivate -ADP-ribosyl transferase activity in the subunit peptide expression product.
15 It is also a primary object of the invention to provide a polynucleoride
adjuvant composition contaimng first and second nucleic acid sequences, wherein the first nucleic acid sequence is a modified A subunit coding region obtained or derived from a bacterial .ADP-ribosylating exotoxin, and the second nucleic acid sequence is a B subunit coding region obtained or derived from a bacterial AD?-
20 ribosylating exotoxin. The modified A subunit coding region and said B subunit
coding region each encode a mature subunit peptide, and the modified A subunit coding region has been genetically modified so as to delete a C-terminaJ KDEL or RDEL motif in the subunit peptide encoded thereby.
As above, the first and second nucleic acid sequences may be present in
25 the same or in different nucleic acid constructs. The truncated subunit coding
regions may be obtained or derived from the same bacterial .ADP-ribosylaring exoioxin and, in certain preferred embodiments, the bac:erial .ADP-ribosylating exotoxin is a cholera toxin (CT) or an E. ccAi heat labile eriterotoxin ('LT). In addition, at least one of the truncated subunit coding regions may be genetically modified to detoxify the subunit peptide encoded therby for example wherem the truncated A subunit coding region has been genetically modified :o disrupt or

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inactivate ADP-ribosyl transferase activity in the subnnit peptide expression product.
In certain aspects of the invention, the above compositions can be
provided in particulate form, for example wherein the compositions are
5 particulates suitable for deliver/ from a particle delivery device. In this regard,
the present compositions may be coated onto the same or a different core carrier particle and thus suitable for delivery using a particle-mediated transfection technique. Preferred core carrier particies will have an average diameter of about 0.1 to 10 µm, and may comprise a metal such as gold. Accordingly, it is a still
10 further object of the invention to provide a particle delivery device loaded with
4 (e.g., containing) a particulate composition as defined herein.
It is also a primary object of the invention.to provide for the use of a composition containing a first and second nucleic acid sequence, where each sequence includes a coding region for a subunit from a bacterial ADP-
15 ribosylating exotoxin in the manufacmre of a medicament for enhancing an
immime response in a vertebrate subject against an antigen of interest in the said subject. The antigen of interest and the composition are administered to the subject such that the toxin subunits encoded by the first and second nucleic acid sequences are expressed in an amount sufncient to elicit an enhanced immime
20 response against the antigen. The first nucleic acid sequence contains a truncated
A subunit coding region obtained or derived from a bacterial ADP-ribosylating
exotoxin, and the second nucleic acid sequence contains a turncated B subunit
^"^ coding region obtained or derived from a bacterial ADP-ribosylating exotoxin,
however with the proviso that each of the truncated subunit coding regions has a
25 5' deletion and encodes a subunit peptide not having an amino terminal bacterial
signal peptide.
It is a related primary object of the invention to provide a method for enhancing an immume resnonse asainst an antigen of interest in a subiect. The method generally entails: (a) administering the antigen of interest to the subject;
30 (b) providing an adjuvant composition compnsing first and second nucleic acid
sequences, wherein the first nucleic acid sequence is a truncated A subunit coding



region obtained or derived from a bacterial ADP-ribosylating exotoxin, and the
second nucleic acid sequence is a truncated B subunit coding region obtained or
derived from a bacterial ADP-ribosylating exotoxin; and (c) administering the
adjuvant composition to the subject, whereby upon introduction to tlie subject,
5 the first and second nucleic acid sequences are expressed to provide subunit
peptides in an amount sufficient to elicit an enhanced immune response agahist the antigen of interest. The subunit coding regions are trancated in that each coding region has a 5' deletion and encodes a subunit ::eoiide not having an amino terminal bacterial signal peptide.
10 It is yet a farther primary object of the invention to provide for the use of
a composition comprising a first and second nucleic acid sequence, where each sequence includes a coding region for a subunit fi-om a bacterial ADP-ribosylating exotoxin in the m.anufacture of a medicament for enhancing an immime response in a vensbrate subject against an antigen of interest in the said
15 subject. The antigen of interest and the composition are administered to the
subject such that the toxin subunits encoded by the first and second nucleic acid sequences are expressed in an amcimt sufrlcient to ehcit an erJianced irmnune
20 25


second nucleic acid sequence is a B subunit coding region obtained or derived
from a bacterial ADP-ribosylating exotoxin; and (c) administering the adjuvant
composition to the subject, whereby upon introduction to the subject, the first and
second nucleic acid sequences are expressed to provide subunit peptides in an
5 amount sufficient to elicit an enhanced immune response against the antigen of
interest. The subunit coding regions are modified in that each encodes a mature subunit peptide, but the A subunit coding region has been genetically modified so as :o delete a C-:erminal IGDEL or RDEL motif in the subunit peptide encoded thereby.
10 In the uses and methods of the invention, administering the adjuvant
comnositions entails transfecting cells of the subject with a polynucleotide adjuvant composirion according to the present invention. Expression cassettes and/or vectors containing the nucleic acid molecules of the present invention can be used to transfect the cells, and transfection is carried out under conditions that
15 pennit expression of the subunit peptides within the subject. The method may
farther entail one or more steps of administering at least one secondary composition to the subject.
The transfection procedure carried out during the immunization can be conducted either in vivo, or ex vivo (e.g., to obtain transfected cells which are
20 subsequently introduced into the subject prior to carrying out the secondary
immunizadon step). When in vivo transfection is used, the nucleic acid molecules can be administered to the subject by way of intramuscular or intradermal injection of plasmid DNA or, preferably, administered to the subject using a particle-mediated delivery technique. Vaccine compositions (containing
25 the antigen of interest) can be provided in the form of any suitable vaccine
composition, for example, in the form of a peptide subunit composition, in the form, of a nucleic acid vaccine composition, or in the form of a whole or split virus influenza vaccine composition.
In certain methods, the antigen of interest and the adjuvant composition
30 are administered to the same site in the subject. For example, the adjuvant
composition and the antigen of interest can be administred concurrently (e.g.,
5


provided in a single vaccine composition). In certain preferred embodiments, the adjuvant and, optionally the antigen of interest, is administered in particulate form, for example wherein the adjuvant composition has been coated onto a core carrier particle and delivered to the subject using a particle-mediated deliver/
5 technique.
In these methods, administration of the polyr.uclectide adjuvant
compositions of the present invention preferably results in an augmented cellular
immune response against the co-administered antigen of interest. Such an
enhanced immune response may be generally characterized by increased titers of
10 inrerferon-producing OD4 and/or CDS* T lymphocytes, increased antigen-
specific cytotoxic T lymphocyte (CTL) activity, and a T helper 1-like immmune
response (Thl) against the antigen of interest (characterized by increased antigen-specific antibody titers of the subclasses typically associated with cellular



(hCMV) immediate early promoter and associated intron A sequence, and the
coding sequence for the signal peptide of human tissue plasminogen activator co
allow for secretion from mammalian cells of the tnmcated CTA expression
product. The figure further contains the complete nucleic acid sequence (SEQ ID
5 NO: 1) for the pPJV2002 plasmid.



Figure 5 is a restriction map and functional map of plasmid pPJV2005
that contains a truncated coding sequence for an LT subunit B (LTB) peptide,
v/herein the plasmid further contains the hCMV immediate early promoter and
associated inrron A sequence, and the coding sequence for the signal peptide of
5 human tissue plasminogen activator to allow for secretion from mammalian cells



Formulation #2 containing the EmpVec (pWRG7054) and the pCLA-EnvT plasmid ("gpl20"); Formulation #3 containing the EmpVec (pWRG7054) combined with the pPJV2002 and pPW2003 adjuvant vectors ("CTA/B"); Formulation #4 containing :he pCLVEnvT plasmid ("gpl20") combined with the






Definitioas
10 Unless defined otherwise, all technical and scientific terms used herein

have the same meaning as commonly understood bv one of ordinary skill in the an to which the invention pertains. Although a number of methods and materials similar or equivalent to those described herein can be used in the practice of the present invention, the preferred materials and methods are described herein.
15 In describing the present invention, the following terms will be employed,
and are intended to be defined as indicated below.
The term 'adjuvant" intends any material or composition capable of specifically or non-specifically altering, enhancing, directing, redirecting, potentiating or initiating an antigen-specific immune response. Thus,
20 coadministration of an adjuvant with an antigen may result in a lower dose or
fewer doses of antigen being necessary to achieve a desired immune response in

the subject to which the antigen is administered, or coadmiristration may result in
f ...
a qualitatively and'or quantitatively different immune response in the subject.
25 30

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An "adjuvant composition" intends any phannaceutical composition
containing an adjuvant Adjuvant compositions can be delivered in the methods
of the invention while in any suitable phannaceutical fonn, for example, as a
liquid, powder, cream, lotion, emulsion, gel or the like. However, preferred
5 adjuvant compositions will be in particulate form. It is intended, although not
always explicitly stated, that molecules havmg similar biological activity as witd-type or purified peptide or chemical adjuvants.



For purposes of the present invention, a 'humoral immune response" refers to an
immune response mediated by antibody molecules, while a "cellular immune
response" is one mediated by T-lymphocytes and/'cr ocher white blood ceils.
The term 'nucleic acid immunization" is used herein to refer to the
5 iniroducrion of a nucleic acid molecule encoding one or more selected antigens
into a host cell for the in vivo expression of the antigen or antigens. The term also encompasses introduction of a nucleic acid molecule encoding one or more selected adjuvants into a host cell for the in vnvo expression of the adjuvanta or adjuvants. The nucleic acid molecule can be introduced directly into the



a central processing unit and used for bioinfonnatics applications such as functional genomics and homology searching.
A "vector" is capable of transferring nucleic acid sequences to target cells
(e.g., viral vectors, non-viral vectors, particulate carriers, and liposomes).
5 Typically. 'Vector constructy' "expression vector," and "gene transfer vector."
mean any nucleic acid construct capable of directing the expression of a gene of
interest and which can transfer gene sequences to target cells. Thus, the term
includes cloning and expression vehicles, as well as viral vectors. A 'plasmid' is
a vector in the form of an extrachromosomal genetic element.
10 A nucleic acid sequence which "encodes" a selected adjuvant and/or






effecting the expression of that sequence when the proper enzymes are present.
The promoter need not be contiguous with the sequence, so long as it functions to
direct the expression thereof Thus, for example, intervening untranslated yet
transcribed sequences can be present between the promoter sequence and the
5 nucleic acid sequence and the promoter sequence can still be considered
'operabiy linked" to the coding sequence.
'Recombinant" is used herein to describe a nucleic acid molecule
(polynucleotide) of genomic, cDNA, semisyathetic, or syntheric or.gin whihc by
virtue of its origin or manipulation is not associated with all or a pordon of the
10 polynucleotide with which it is associated in nature and/or is linked to a
polynucleotide other than that to which it is linked in nature. Two nucieic acid sequences which are contained within a single recombinanr nucleic acid molecule are 'heterologous" relative to each other when they are not normally associated with each other in nature.



whether nucleic acid or amino acid sequences, is the number of exact matches
between two aligned sequences divided by the length of the shorter sequences and
multiplied by 100. An approximate alignment for nucleic acid sequences is
provided by the local homology algorithm of Smith and Waterman, Advances in
5 Applied Mathematics 2:482-489 (1981). This algorithm can be applied to amino
acid sequences by using the scoring matrix developed by Davhoff. Atlas of



Alternatively, homology can be determined by hybridization of
polynucleotides under conditions which form stable duplexes between
homologous regions, followed by digestion with singie-stranded-specific
nucleasels), and size determination of the digested fragmens. Two DNA, or two
5 polypeptide sequences are 'substantially homologous" to each other when the


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By "core carrier" is meant a carrier on which a guest nucleic acid (e.g., DNA, RSA) is coated in order to impart a denned particle size as well as a sufficiently high density to achieve the momentum required for cell membrane penetration, such that the guest molecule can be delivered using panicle-mediated





that this invention is not limited to particular formulations or process parameters
as such may, of course, vary. It is also to be understood that the terminology used
herein is for the purpose of describing particular embodimenis of the invention
only, and is not intended to be limiting.
5 The present invention provides novel compositions containing nucleic
acid sequences, wherein a first sequence in the composition is a coding sequence
lor an A subunit obtained or derived from an ADP-ribosylating baccerial toxin,
and a second sequence in the composition is a coding sequence for a B subunit
obtained or derived from an .ADP-ribosyiating bacterial toxin. The fust and
10 second sequences are useful in immunization methods wherein they are delivered



extremely similar molecules, and are at least about 70-80% homologous at the
amino acid level.
The CT and LT toxins are hexamers, composed of a single molecule of an
A subunit surrounded by a doughnut-shaped ring composed of 5 molecules of the
5 3 subunit. The A subunit possesses an ADP-ribosylase activity resulting in G
protein modifications that lead to cAMP and protein Idnase A upregulation following internlization of the A subunit in a manmrialian cell. The A subunit can be nicked by exogenous proteases yielding the Al and A2 fragments linlced via a single disulfide bridge. The A subunit of CT contains a C-terminal KDEL



triggering activity, respectively. Regarding the B subunit of LT in particular,
binding to the GMl receptor on B cells results in polyclonal activation, occurs in
the absence of signiiicant proliferation, and involves the upregulation c: a
number of important molecules such as MHC class II, B7, CD40, ICAM-1 and
5 IL2-Ra. For T cells, addition of CT or LT holotoxins or recombinant 3 subunits



is a coding region for a modified, mature A subunit peptide obtained or derived
from an ADP-ribosylating exotoxin, and (b) the second nucleic acid sequence is a
coding region for a mature B subunit peptide obtained or derived from an ADP-
ribosylating exotoxin. The first nucleic acid sequence contains a coding region
5 that provides for a "modified" A subunit peptide in that the said coding region
has been genetically altered so as to delete a four amino acid residue C-termnai KDEL or RDZL motif normally found in the encoded subumil peotide.
In still a further embodiment, a composition is provided which includes



aspects of the invention, one or both of the toxin subunit peptide coding regions
can be further genetically modified to detoxify rhe subunit peptide(s) encoded
thereby. For example, genetically altered toxin mutants which have disrupted
A\DP-ribcsylat:ng acnviry, tripsin cleavage site mutations, or disrapted birding
5 activity are known in the art. See, e.g., Burnetts at al. (1994) 'Recombinant
n"iicrobial ADP-ribosylating toxins of Bordetella peniisis. Vibrio ckolerae. ana enterotoxigenic Escherichia coli: structure, function and toxoid vaccine



prime the replication reaction. The product of the first round of replication is
itself a template for subsequent replication, thus repeated successive cycles of
replication result in geometric amplification of the DNA fragment delimited by
the primer pair used,
5 Once the relevant sequences for the ADP-ribosylating exotoxin subunits
of mterest have been obtained, they can be linked together to provide one or mors conuguous nucleic acid molecules using standard cloning or molecular biology techniques. More particularly, after sequence information for the selected toxin subunit combination has been obtained, the coding sequences can be combined


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vectors which include control sequences operably linked to the inserted sequence or sequences, thus providing expression cassettes that allow for expression of the toxin subunit peptides in vivo in a targeted subject species.



exotoxin subunit peptide coding sequences of interest, the expression cassettes can be provided in a suitable transfection vector such as a DNA plasmid vector or a viral vector for subsequent administration to a subject.. In this regard, the polynuclectide compositions of the invention can be used as standalone adjuvant



lower or fewer doses of the antigen are required to generate an eScient immune response.
As used herein, the term 'cc-administered' such as when an AD?-
nbosylating exotoxin subunit encoding adjuvant composition according :c the
5 present invention is "co-administered' with an antigen of Interest (e.g., a vaccine
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ccmmon allergens can also be obtained from molds or fung] such as Altemaria, Fusarium, Hormodendrum, Aspergillus, Micropolyspora, Mucor and thermophilic actinomycetes; penicillin and tetracycline are common ancibiotic


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associated with colorectal cancer, gplOO or MARTI antigens associated with
melanoma, and the PSA antigen associated with prostate cancer. The p53 gene
sequence is know-n (see e.g., Harris et al. -(1986) MoL Call Biol. 6:4650-4656)
' and is deposited with GenBank under Accession No. Ml4694. Thus, the
5 adjuvant composirions of the present invention can be used to carry out
immunotherapeutic methods for treating cervical, breast, colorectal, prostate, lung cancers and melanomas.


/

isolate DNA. Polyiucleodde sequences can also be produced synthetically, rather than cloned.
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which have an integrated defective provirus (the "helper") that expresses all of
the genes of the virus but cannot package its own genome due to a deletion of the
packaging signal, known as the psi sequence. Thus, the cell line produces empty-
viral shells. Producer lines can be derived from the packaging lines which, in
5 addition to the helper, contain a viral vector which includes sequences required in



A-\V expression vectors are constructed using kno'vvn techniques to at
least provide as operatively linked components in the direction of transcription,
20 control elements including a transcriptional initiation region, the DNA of interest
and a transcriptional termination region. The control elements are selected to be functional in a mammalian cell. The resulting construct which contains the operatively linked components is bounded (5' and 3') with functional AAVITR sequences. Suitable AAV constructs can be designed using techniques well





Conventional Pharmaceutical Preparations
Formulation of a preparation comprising the polynucleotide molecules of
5 the present invention, with or without addition of an antigen composition, can be
carried out using standard pharmaceutical formulation chemistries and
methodologies all of which are readily available to the ordinarily' skilled artisan.
For example, compositions containing one or more suitable vectors can be
combined with one or more pharmaceutically acceptable excipients or vehicles to
10 provide a hquid preparation.



auxiliary substances is available in REMINGTON'S PKL\RMACEUTIC.AI SCIENCES (IVIack Pub. Co., N.J. 1991), incorporated herein by reference.
Certain facilitators of nucleic acid uptake and'or expression ('transfection
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polylysine, polyarginine, polyomithine, spermine, spermidine, as well as conj agates of these molecules.
The formulated compositions will thus typically include one of more poiynucleotide molecule (e.g., plasraid vector) containing the coding sequences



dextran-mediated transfection, calcium phosphate precipitation, electroporation, and direct microinjection of into nuclei). However, deliver/will most typically be via conventional needle aiid svrmge for the liquid compositions and for liquid
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prepared and suitably purified, the above-described plasmid vector constructs can
be coated onto carrier particles {e.g., core carriers) using a variety' of techniques
known in the art. Carrier particles are selected from materials which have a
suitable density in the range of panicle sizes typically used for intracellular
5 delivery from an appropriate particle delivery' device. The optimum carrier
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15 Following their formation, core carrier particles coated with the nucleic
acid preparations of the present invention, alone or in combination with e.g., antigen preparations, are delivered to a subject using particle-mediated deliver}'
techniques.





The coated particles are administered to the subject to be treated in a maimer compatible with the dosage formulation, and in an amount that will be effective to bring about the desired adjuvant effect'immune response. The amount of the composition to be delivered which, in the case of nucleic acid


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acid, rartaric acid, glycine, high molecular weight pclyeihyiene glycols i7EGs),
-0 and combination thereof. A thorough discussion of pharmaceuticaily acceptable
sxcipients, carriers, stabilizers and other auxiliary substances is available in REMINGTON'S PHARMACEUTICAL SCIENCES (Mack Pub. Co., NJ. 1991), irxorporated herein by referepxe.



packaged prior to use, can comprise a hermetically sealed container enclosing a
suitable amount of the particles comprising a suitable nucleic acid construct
and/or a selected antigen (e.g., to provide a multicomponent vaccine
composition). The particulate compositions can be packaged as a sterile
5 formulation, and the hermetically sealed container can thus be desiened to
preserve sterility of the formulation until use in the methods of :he invention. If
desired, the containers can be adapted for direct use in a panicle delivery device.
Such containers can take the form of capsules, foil pouches, sachets, cassertes,
and the like. Appropriate panicle delivery devices (e.g., needleless s>Tinces) are
10 described herein.
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surface, and the densicy and kinematic viscosity of the targeted skin tissue. In this regard, optimal particle densities for use in needleless injection generally range ber.veen about 0.1 and 25 g./cm3. preferably between about 0.9 and 1.5 g.'cm3 and
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. r/
Enhancing Immune Responses
5 In another embodiment of the invention, a method for enhancing an
immune response against a co-administered antigen of interest is provided. In essence, the method entails (a) administering an antigen of interest to a subject.



additionai or arciliary" components to the subjec:. For rxample, a secondary
30 vaccine ccmposinon can be administered, wherein the secondary' composition can
comprise a nucleic acid vaccine, or the secondan' vaccine composition can
1"*


Experimental
Below are examples of specific embodiments for canning out the present
20 invention. The examples are offered for illustrative purposes only, and are not
intended to limit the scope of the present invention in anyway.
Efforts have been made to ensure accuracy with respect to numbers used (e.g., amounts, temperatures, etc.). but some experimental error and deviation should, of course, be allowed for.
4S


In order tc facilitate insertion into an expression vector, Primers 1 and 2
contain extra sequences at their 5' ends (outside the region of homology to the
CTA coding sequence) which include recognition sites for Xhel and BamHI,
20 respectively. Primers 1 and 2 were designed to lead to PCR generation of a
fragment of the A subunit coding sequence starting a: nucleotide position 16- and ending at nucleotide position S86 (GenBank Accession PD30O53). This region



Primer 4: 5'— CCT GGA TCC TTA ATT TGC CAT ACT AAT TGC —3' (SEQ ID NO: 10).
In order to facilitate insertion-into an expression vector, Primers 3 and 4
5 contain extra sequences at their 5' ends (outside the region of homology to the
CTB coding sequence) which include recognition sites for Nhel and BamKL
respectively. Primers 3 and 4 were designed lo lead to PCR generation of a
fraement of the B subunit coding sequence starring at nucieotide position 946 and
ending at nucleotide position 1257 (GenBank Accession #D30053). This region
i G encompasses the entire coding sequence for the mature subunit B peptide but
k does not include the sequence encoding the bacterial signal peptide found at the



('minus KDEL). respectively. The parental cloning vector pWRG7054 contains the human cvtomegalovirus immediate early promoter with the associated intrcn A sequence. In addition, the coding sequence for the signal peptide of human tissue plasminogen acdvator is included in pWRG7054 to allow for the secretion


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respectively. Primers 6 and 7 were designed to lead to PCR generation of a
fragment of the A snbunit coding sequence starting at nucleotide position 145 and



More panicularly, the sequence from the RNA segment #7 (rha: encodes
30 the M2 protein) of influenza virus strain A'Xagoshima 10/95 (H3N2) was used as
a model to design PCR primers to facilitate cloning of the manure M2 coding
53


sequence from AySydney/5/97 (H3N2). The A/Kagoshima sequence was used for primer design since the sequence of RNA segment 7 of A'Sydney has not yet been determined. The high degree of conservation among M2 sequences was



after which. 0.5µl of reverse transcriptase from the kit was added. The reaction was incubated at 37°C for 15 minutes to complete the reverse transcription step. The PCR reaction step was completed by addition of the following



4,0 \xg of DNA per mg of gold, and a single batch contained 26 mg of gold. DNA was precipitated onto the gold particles by addition of a 1/10 volume of 10% CaCl2 during continuous agitation of the tube on a rotary/mixer. DNA-gold complexes were washed three times with absolute ethanol, and then injected into



Formulation #5: pM2-FL DNA vector and pPJV2002 coprecipitated onto single batch of gold (2 |ig pM2-FL DNA per mg gold, and 1 µg of pPJV2002 DNA per mg gold), 0.5 mg gold per cartridge; and
V


washed three times, and a streptavidin-horse radish peroxidase conjugate (Southern Biotechnology) diluted to 1 :8000 in PBS/0.1 % Tween-20 was added and the plate incubated for 1 hour at room temperature. Following three

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As' can be seen, al! experimental groups immunized with a formulanon containing cne or more of the CT-encading adjuvant vectors (Fcnnulations #2-6')



Example 4
Enhancement of .Antigen-Specific Cellular Responses to a DNA Vaccine
Encoding the Hepatitis B Surface Antigen (HBsAg) Using
Adjuvant Plasmid Vectors Encoding the CT-A and CT-B Subunit Peptides.
A Hepatitis B surface antigen (HBsAg) vector plasmid was construacted as follows. To generate the HbsAg coding region, the p.AM6 constract (obtained from the Amxerican Type Culture Collection "ATCC'}



with pWRG712S (1 jig DRV0.5 mg gold per delivery). Mice (4 per expenmental group) were immunized and boosted at 4 weeks, then sacrificed at 2



10% fetal bovine serum (FBS) for 1-2 hr at RT. The medium was removed and
spleen cells dispensed into the wells with a total of 1x106 cells per well. For
wells in which less than 1xlO6 cells from immunized animals was added cells
from naive animals were used, to bring the total to 1x106 Cells were incubated
5 overnight in a tissue culture incubator in the presence of the peptide as described
above. The plates were then washed 2 time witli PBS and 1 time with distilled



The cellular immune responses measured in the two groupS OF mace
indicate a significant erhancement of cellular responses by the CT adjuvant
20 vectors. More particularly, the results of the CDS-specific IFN-v ELISA assay
are depicted below in Table 3.
63


20. adjuvanted formulation is indicative of a greater amount of IFY-ý secreted by
these cells in response to antigen. Cel]s from naive mice did not yield a
iL measurable OD value in the IFN-ý ELISA.
The results of the CD8-specific IFN'-ý EIJSPOT assay are depicted below in Table 4.
■^ ■:: ^'.)
64


The.above data demonstrate that the novel adjuvant compositions ox the
present invention have a potent ability to enhance the cellular immune responses
20 to a coadministered antigen, in this case a HBsAg expressed from a DNA
vaccine.
65


Example 5
Enhancement of Humoral and Cellular Immune Responses to HTV-1 gpl20 Antigen Using Simultaneous Delivers of a gpl20 .Antigen Vector
and CT.VCTB Adjuvant Vectors. 5
A plasmid vector endoding HTV-l gpl20 was constructed as follows. The vector was constructed starting with a Bluescript (Stxatagene, La Jolla, CA) plasmid backbone, the human cytomegalovirus (hCMTV) immediate early



product with the truncation point lying 12S amino acid residues downstream of the gp 120/gp41 processing site.
A second plasmid vector encoding HIV-l rev. termed "pC-rev"' herein.



pWRG7054 DNA per mg gold, and 1 fig each of pPJV2002 and pPJV2003 DNA per mg gold), 0.5 mg gold per cartridge;



V
Serum antibody responses to the HIV gp 120 antigen were tested using an ELISA assay on specimens collected at week 5 and week 6.5 (post-prime and post-boost, respectively). For the ELISA, Costar hih binding ELAplates were



stimulated in medium alone (negative control), "or in medium with 1 µg/ml of a HIV gpl20 peptide having the following sequence: RIQRGPGRAPVITGK (SEQ ID NO: 21). Following a 24 hour incubation at 37°C in 5% CO2, the plates were
km


anrigen in an animal model. In addition, rhe enhanced IFX-y production seen iu these studies indicates that use of the CT adjuvant vector combinations of the present invention provides a robust Thl-like immune response m :he in-iunized animals.
71


Example 6
Enhancement of .Antibody Responses to Hepatitis B Core and Surface
Antigens Using Simultaneous Delivery of a Vector Encoding HBcAs
and HBsAe with CTA/CTB Adjuvant Vectors.



polyA sequence (bGHpA) were each obtained from the JW4303 vector construct (gift of Dr. Harriet Robinson, University of Massachusetts) and inserted into a plasmid backbone. The resultant construct was cut with 'Nhel filled with polvmerase and then cut with BamHI to generate a vector fragment



Formulation #1: Control, the HBcAg/IIBsAg vector (pWRG7193) alone, 2 µg DNA per mg gold, 0.5 mg gold per cartridge; and



2(: control group (Formulation =1) and adjuvant test group (Formulation;=21 were
2S5 and 662 mIUVml, respectively, demonstrating the ability of the present
adjuvant plasmids (pPJV2006 and pPJV2(303) to augment immune responses :o
an antigen er.coded by a separate vector.


Example 7
Enhancement of Cellular Thl-Like Immune Response to a DNA
Vaccine Usine Plasmid Vectors Encoding CT or LT Subunits,
5 The pJvI2-FL DNA vaccine vector encoding the M2 protein of influenza A
virus was employed to test the adjuvant effects of the pPJV2002. pPJV2003, ppJV'2004, pPJV2005, pPJV'2006 and pPA'2007 adjuvant vectors in the context cf particle-mediated DNA vaccination. Particle-mediated DNA vaccination was performed by precipitating the M2 DNA vaccine vector, either v/ith our without
\f0


Formulation #2: pM2-FL DNA vector combined with the CTA and CTB (pPJV2002 and pPJV2003) DNA vectors prior to precipitation onto a single batch. of gold, 2.1 [ig total DNA per mg gold (1.0 µg of each DNA adjuvant vecicr per mg gold, 0.1 µg pM2-FL), 0.5 mg gold per cartridge;



of gold, 2.1 µg total DNA per mg gold (1.0 µg of each DNA adjuvant vector per mg gold, 0.1 |ig pM2-FL), 0.5 mg gold per cartridge;



PowderJect® XR-1 particle delivery device (Powder: ect Vaccines Inc., Madison. \VI) at a helium pressure of 400 p.s.i,. Serum samples were collected two weeks following the second or booster immunization.
Individual serum samples were assayed for M2-3peciiic antibody
5 responses for both IgGl and IgG2a subclasses usmg the ELISA assay of Example
3 above for the determina::on of total IgG titer, except that a secondary .antibody conjugate specific for eidger IgGl or IgG2a was employed. The goat anti-mouse



As can be seen with reference to Table 5, addition of either of the A or B subunits, or the various combinations of A and B subunits to the M2 DNA vaccine formulation resulted in sienificant reductions in the IgGl-to-l2:G2a ratio



v/ith 1.5 mM MgCL (Promega Corp., Madison, WT); 0.400 [iM of each primer; 200 [iM or each cLNTP (USB Inc., Cleveland, OH); 2,5 µg Taq polymerass (Promega Corp., Madison, WD; i.O ng template DNA; water to 100 µl; and a



and EcoR1 to generate a core antigen insertion fragment; the modified pWRGVUS plasmid was cut with Pstl and Mfel to generate a vector fragment, and the core antigen insertion fragment was ligated into the vector fragment, resulting in the dual surface/core antigen plasmid construct.



Fonnulution #3: ("CT w/o TPA") 1 µg dual surface/core antigen DNA plasmid vector, 0.5 jig CTA w/o TPA DNA plasmid vector, 0.5 [ig CTB w/'o TPA DNA plasmid vector;


Formulation #12: ("LTB") 1µg dual surface/core antigen DNA plasmid vector, 1 µg pJV2O05 (LTB) DNA plasmid vector; and
w


Finally, the clearlv observable difference in adjuvant effect between the
secreted (Formulations #2 and =8) and the non-secreted ('Formulaticns -3 and -9)
heins establish that the observed adjuvant effects are not due :o CvG monts
within the adjuvant vectors since the signai-ccntaining and non signai-ccntaining
30 vectors do not have any difference in bacterial DNA (CpG) content yet exhibit
S5

significant differences in their ability to augment surface antigen-specific IFN-7 responses.
In a second study, the above-described DNA vaccine formulations were
adminisiered to eight groups of mice using the PowderJect® XR-1 particle
5 delivery device (PowderJect Vaccines Inc., Madison, UT). Each experimental
group contained 5 animals, and each ammal received two immunizations with the


combinations of the present adjuvant plasmid vectors to provide vaccine compositions. After immunization, the immunized animals were challenged with HSV-2 virus. and the protective effect of the various vaccine compositions was
determined.
1

from the HSV-2 genome, for example the genomic region spanning from
approximately nucleotide 114589 to 134980 of the HSV-2 genome, or anEcoRI
fragment that spans nucleotides 110931 to 139697 of the HSV-2 genome. The
sequence of the HSV-2 genome is available form published sources, for example
5 the sequence deposited with GenBank un der Accession Number NC_001798.



In the study, the above-described DNA vaccine fcrmulatains were administered to five different groups of mice using the PowderJect XR-1
15 panicle delivery device (PowderJect Vaccines Inc., Madison, WT). Each
experimental group contained 12 animals, and each animal received two immunizations (single shot applied to the abdomen) with the respective formulation with a four vveelc restmg period beUveen inmiunizaiions. A sixth group of mice was established as a negative (naivej control, and did not receive
20 any vaccinations. 4 mice from each group were sacked 2 weeks arier the second
immunization and used for IFN-y ELISPOT assays (data not shown).
Two v/eeks post second immunization, all remaining mice (8/group) were challenged with 1X10° FPU of HSV-2 virus, strain MS, via intra-nasal insullation. The survival graph depicting the results of the challenge study is
25 depicted in Figure 14. As can be seen, 100% of the naive animals succumbed
within 4 days post challenge. The naive animals are depicted on the graph by the curve. In addition, 100% of the animals receiving the ICP27 antigen plasn:d vector alone (Formulation #1) died within 7 days post challenge. The animals
receiving Formulation #1 are depicted on the graph by the curve. In marked
30 contrast, the 25% (2/S) of the anim.als receiving the ICP27 piasnrid adjuvanicd
with the low dose CT (Formulation 3) were protected tcm the viral challenge,
89

and 38% (3/8) of the animals receiving the ICP27 adjuvanted with the high dose
CT (Formulation #2) were protected from the viral challenge. The animals
receiving Formulation #3 are depicted on the graph by the (■) curve. The
animals receiving Formulation #2 are depicted on the graph by the (♦) cruve.
5 Finally, both the low dose LT-adjuvanted (Formulation =5) and the high dose LT-
adjuvanted (Formulation #4) ICP27 vaccine provided complete (100%) protection in the immunized animals. The animals receiving Formulation #5 are
depicted on the graph by the curve. The animals receving Formulation =4
are depicted on the graph by the (O) cur\'e.
10
Accordingly, novel polynucleotide adjuvant molecules, compositions
comprising those adjuvant molecules, and conventional and nucleic acid
15 immunization techniques have been described. Although preferred embodiments
of the subject invention have been described in some detail, it is understood that obvious variations can be made without departing from the spi

wo 03/004055 PCT/USOl/43151
NUCLEIC ACID ADJUVANTS
Technical Field
The invention relates to the fields of molecular biology and immunology,
5 and generally relates to nucleic acid immunization techniques. More specincaliy,
the invention relates to polynucleotides encoding an adjuvant, and to immunization strategies employing sucholynucleocides.
Background
] 0 Techniques for the injection of DNA and mRNA into mammalian tissue
for the purposes of immunization against an expression product have been described in the art. The techniques, termed "nucleic acid immunization" herein, have been shown to elicit both humoral and cell-mediated immune responses. For example, sera from mice immunized with a DNA construct encoding the
15 envelope glycoprotein, gpl60, were shown to react with recombinant gpl60 in
immunoassays, and lymphocytes from the injected mice were shown to proliferate in response to recombinant gpI20. Wang et al, (1993) Proc. Nad, Acad. Sci USA 90:4156-4160. Similarly, mice immumzed with a human growth hormone (hGH) gene demonstrated an antibody-based immune response. Tang et
20 al. (1992) Nature 356:152-154. Intramuscular injection of DNA encoding
influenza nucleoprotein driven by a mammalian promoter has been shown to elicit a CDS+ CTL response that can protect mice against subsequent lethal challenge with virus. Ulmer et al. (1993) Science 259:1745-1749. Immunohistochemical studies of the injection site revealed that the DNA was
25 taken up by myeloblasts, and cvtoplasmic production of viral protein could be
demonsurated for at least 6 months.
Summary of the Invention
It is a primarv object of the invention to provide a polynucleotide adjuvant
30 composition containing furst and second nucleic acid sequences, wherein the first
nucleic acid secuence is a trucated A subunit coding region obtained or derived
1


from a bacterial ADP-ribosylating exotoxin, and the second nucleic acid sequence
is a truncated B subunit coding region obtained or derived from a bacterial ADP-
ribosylating exotoxin. Each of the truncated subunit coding regions has a 5'
deletion and encodes a subunit peptide not having an amino terminal bacterial
5 signal peptide.
The first and second nucleic acid sequences maybe present in the same or
in different nucleic acid constructs. The troncated subunit cod'lng regions may be
obtained or derived from the same bacterial ADP-ribosylating exotoxin and. in
cer.ain preferred embodiments, the bacterial .ADP-ribosylating exotoxin is a
10 cholera toxin (CT) or an E, coli heat labile enterotoxin (LT). In addition, at least
W
one of the truncated subunit coding regions maybe genetically modified to detoxify the subunit peptide encoded thereby, for example wherem the tnmcated A submiit coding region has been genetically modified to disrupt or inacrivate -ADP-ribosyl transferase activity in the subunit peptide expression product.
15 It is also a primary object of the invention to provide a polynucleoride
adjuvant composition contaimng first and second nucleic acid sequences, wherein the first nucleic acid sequence is a modified A subunit coding region obtained or derived from a bacterial .ADP-ribosylating exotoxin, and the second nucleic acid sequence is a B subunit coding region obtained or derived from a bacterial AD?-
20 ribosylating exotoxin. The modified A subunit coding region and said B subunit
coding region each encode a mature subunit peptide, and the modified A subunit coding region has been genetically modified so as to delete a C-terminaJ KDEL or RDEL motif in the subunit peptide encoded thereby.
As above, the first and second nucleic acid sequences may be present in
25 the same or in different nucleic acid constructs. The truncated subunit coding
regions may be obtained or derived from the same bacterial .ADP-ribosylaring exoioxin and, in certain preferred embodiments, the bac:erial .ADP-ribosylating exotoxin is a cholera toxin (CT) or an E. ccAi heat labile eriterotoxin ('LT). In addition, at least one of the truncated subunit coding regions may be genetically modified to detoxify the subunit peptide encoded therby for example wherem the truncated A subunit coding region has been genetically modified :o disrupt or

y

inactivate ADP-ribosyl transferase activity in the subnnit peptide expression product.
In certain aspects of the invention, the above compositions can be
provided in particulate form, for example wherein the compositions are
5 particulates suitable for deliver/ from a particle delivery device. In this regard,
the present compositions may be coated onto the same or a different core carrier particle and thus suitable for delivery using a particle-mediated transfection technique. Preferred core carrier particies will have an average diameter of about 0.1 to 10 µm, and may comprise a metal such as gold. Accordingly, it is a still
10 further object of the invention to provide a particle delivery device loaded with
4 (e.g., containing) a particulate composition as defined herein.
It is also a primary object of the invention.to provide for the use of a composition containing a first and second nucleic acid sequence, where each sequence includes a coding region for a subunit from a bacterial ADP-
15 ribosylating exotoxin in the manufacmre of a medicament for enhancing an
immime response in a vertebrate subject against an antigen of interest in the said subject. The antigen of interest and the composition are administered to the subject such that the toxin subunits encoded by the first and second nucleic acid sequences are expressed in an amount sufncient to elicit an enhanced immime
20 response against the antigen. The first nucleic acid sequence contains a truncated
A subunit coding region obtained or derived from a bacterial ADP-ribosylating
exotoxin, and the second nucleic acid sequence contains a turncated B subunit
^"^ coding region obtained or derived from a bacterial ADP-ribosylating exotoxin,
however with the proviso that each of the truncated subunit coding regions has a
25 5' deletion and encodes a subunit peptide not having an amino terminal bacterial
signal peptide.
It is a related primary object of the invention to provide a method for enhancing an immume resnonse asainst an antigen of interest in a subiect. The method generally entails: (a) administering the antigen of interest to the subject;
30 (b) providing an adjuvant composition compnsing first and second nucleic acid
sequences, wherein the first nucleic acid sequence is a truncated A subunit coding



region obtained or derived from a bacterial ADP-ribosylating exotoxin, and the
second nucleic acid sequence is a truncated B subunit coding region obtained or
derived from a bacterial ADP-ribosylating exotoxin; and (c) administering the
adjuvant composition to the subject, whereby upon introduction to tlie subject,
5 the first and second nucleic acid sequences are expressed to provide subunit
peptides in an amount sufficient to elicit an enhanced immune response agahist the antigen of interest. The subunit coding regions are trancated in that each coding region has a 5' deletion and encodes a subunit ::eoiide not having an amino terminal bacterial signal peptide.
10 It is yet a farther primary object of the invention to provide for the use of
a composition comprising a first and second nucleic acid sequence, where each sequence includes a coding region for a subunit fi-om a bacterial ADP-ribosylating exotoxin in the m.anufacture of a medicament for enhancing an immime response in a vensbrate subject against an antigen of interest in the said
15 subject. The antigen of interest and the composition are administered to the
subject such that the toxin subunits encoded by the first and second nucleic acid sequences are expressed in an amcimt sufrlcient to ehcit an erJianced irmnune
20 25


second nucleic acid sequence is a B subunit coding region obtained or derived
from a bacterial ADP-ribosylating exotoxin; and (c) administering the adjuvant
composition to the subject, whereby upon introduction to the subject, the first and
second nucleic acid sequences are expressed to provide subunit peptides in an
5 amount sufficient to elicit an enhanced immune response against the antigen of
interest. The subunit coding regions are modified in that each encodes a mature subunit peptide, but the A subunit coding region has been genetically modified so as :o delete a C-:erminal IGDEL or RDEL motif in the subunit peptide encoded thereby.
10 In the uses and methods of the invention, administering the adjuvant
comnositions entails transfecting cells of the subject with a polynucleotide adjuvant composirion according to the present invention. Expression cassettes and/or vectors containing the nucleic acid molecules of the present invention can be used to transfect the cells, and transfection is carried out under conditions that
15 pennit expression of the subunit peptides within the subject. The method may
farther entail one or more steps of administering at least one secondary composition to the subject.
The transfection procedure carried out during the immunization can be conducted either in vivo, or ex vivo (e.g., to obtain transfected cells which are
20 subsequently introduced into the subject prior to carrying out the secondary
immunizadon step). When in vivo transfection is used, the nucleic acid molecules can be administered to the subject by way of intramuscular or intradermal injection of plasmid DNA or, preferably, administered to the subject using a particle-mediated delivery technique. Vaccine compositions (containing
25 the antigen of interest) can be provided in the form of any suitable vaccine
composition, for example, in the form of a peptide subunit composition, in the form, of a nucleic acid vaccine composition, or in the form of a whole or split virus influenza vaccine composition.
In certain methods, the antigen of interest and the adjuvant composition
30 are administered to the same site in the subject. For example, the adjuvant
composition and the antigen of interest can be administred concurrently (e.g.,
5


provided in a single vaccine composition). In certain preferred embodiments, the adjuvant and, optionally the antigen of interest, is administered in particulate form, for example wherein the adjuvant composition has been coated onto a core carrier particle and delivered to the subject using a particle-mediated deliver/
5 technique.
In these methods, administration of the polyr.uclectide adjuvant
compositions of the present invention preferably results in an augmented cellular
immune response against the co-administered antigen of interest. Such an
enhanced immune response may be generally characterized by increased titers of
10 inrerferon-producing OD4 and/or CDS* T lymphocytes, increased antigen-
specific cytotoxic T lymphocyte (CTL) activity, and a T helper 1-like immmune
response (Thl) against the antigen of interest (characterized by increased antigen-specific antibody titers of the subclasses typically associated with cellular



(hCMV) immediate early promoter and associated intron A sequence, and the
coding sequence for the signal peptide of human tissue plasminogen activator co
allow for secretion from mammalian cells of the tnmcated CTA expression
product. The figure further contains the complete nucleic acid sequence (SEQ ID
5 NO: 1) for the pPJV2002 plasmid.



Figure 5 is a restriction map and functional map of plasmid pPJV2005
that contains a truncated coding sequence for an LT subunit B (LTB) peptide,
v/herein the plasmid further contains the hCMV immediate early promoter and
associated inrron A sequence, and the coding sequence for the signal peptide of
5 human tissue plasminogen activator to allow for secretion from mammalian cells



Formulation #2 containing the EmpVec (pWRG7054) and the pCLA-EnvT plasmid ("gpl20"); Formulation #3 containing the EmpVec (pWRG7054) combined with the pPJV2002 and pPW2003 adjuvant vectors ("CTA/B"); Formulation #4 containing :he pCLVEnvT plasmid ("gpl20") combined with the






Definitioas
10 Unless defined otherwise, all technical and scientific terms used herein

have the same meaning as commonly understood bv one of ordinary skill in the an to which the invention pertains. Although a number of methods and materials similar or equivalent to those described herein can be used in the practice of the present invention, the preferred materials and methods are described herein.
15 In describing the present invention, the following terms will be employed,
and are intended to be defined as indicated below.
The term 'adjuvant" intends any material or composition capable of specifically or non-specifically altering, enhancing, directing, redirecting, potentiating or initiating an antigen-specific immune response. Thus,
20 coadministration of an adjuvant with an antigen may result in a lower dose or
fewer doses of antigen being necessary to achieve a desired immune response in

the subject to which the antigen is administered, or coadmiristration may result in
f ...
a qualitatively and'or quantitatively different immune response in the subject.
25 30

^■f^^ll^


An "adjuvant composition" intends any phannaceutical composition
containing an adjuvant Adjuvant compositions can be delivered in the methods
of the invention while in any suitable phannaceutical fonn, for example, as a
liquid, powder, cream, lotion, emulsion, gel or the like. However, preferred
5 adjuvant compositions will be in particulate form. It is intended, although not
always explicitly stated, that molecules havmg similar biological activity as witd-type or purified peptide or chemical adjuvants.



For purposes of the present invention, a 'humoral immune response" refers to an
immune response mediated by antibody molecules, while a "cellular immune
response" is one mediated by T-lymphocytes and/'cr ocher white blood ceils.
The term 'nucleic acid immunization" is used herein to refer to the
5 iniroducrion of a nucleic acid molecule encoding one or more selected antigens
into a host cell for the in vivo expression of the antigen or antigens. The term also encompasses introduction of a nucleic acid molecule encoding one or more selected adjuvants into a host cell for the in vnvo expression of the adjuvanta or adjuvants. The nucleic acid molecule can be introduced directly into the



a central processing unit and used for bioinfonnatics applications such as functional genomics and homology searching.
A "vector" is capable of transferring nucleic acid sequences to target cells
(e.g., viral vectors, non-viral vectors, particulate carriers, and liposomes).
5 Typically. 'Vector constructy' "expression vector," and "gene transfer vector."
mean any nucleic acid construct capable of directing the expression of a gene of
interest and which can transfer gene sequences to target cells. Thus, the term
includes cloning and expression vehicles, as well as viral vectors. A 'plasmid' is
a vector in the form of an extrachromosomal genetic element.
10 A nucleic acid sequence which "encodes" a selected adjuvant and/or






effecting the expression of that sequence when the proper enzymes are present.
The promoter need not be contiguous with the sequence, so long as it functions to
direct the expression thereof Thus, for example, intervening untranslated yet
transcribed sequences can be present between the promoter sequence and the
5 nucleic acid sequence and the promoter sequence can still be considered
'operabiy linked" to the coding sequence.
'Recombinant" is used herein to describe a nucleic acid molecule
(polynucleotide) of genomic, cDNA, semisyathetic, or syntheric or.gin whihc by
virtue of its origin or manipulation is not associated with all or a pordon of the
10 polynucleotide with which it is associated in nature and/or is linked to a
polynucleotide other than that to which it is linked in nature. Two nucieic acid sequences which are contained within a single recombinanr nucleic acid molecule are 'heterologous" relative to each other when they are not normally associated with each other in nature.



whether nucleic acid or amino acid sequences, is the number of exact matches
between two aligned sequences divided by the length of the shorter sequences and
multiplied by 100. An approximate alignment for nucleic acid sequences is
provided by the local homology algorithm of Smith and Waterman, Advances in
5 Applied Mathematics 2:482-489 (1981). This algorithm can be applied to amino
acid sequences by using the scoring matrix developed by Davhoff. Atlas of



Alternatively, homology can be determined by hybridization of
polynucleotides under conditions which form stable duplexes between
homologous regions, followed by digestion with singie-stranded-specific
nucleasels), and size determination of the digested fragmens. Two DNA, or two
5 polypeptide sequences are 'substantially homologous" to each other when the


w^^-


By "core carrier" is meant a carrier on which a guest nucleic acid (e.g., DNA, RSA) is coated in order to impart a denned particle size as well as a sufficiently high density to achieve the momentum required for cell membrane penetration, such that the guest molecule can be delivered using panicle-mediated





that this invention is not limited to particular formulations or process parameters
as such may, of course, vary. It is also to be understood that the terminology used
herein is for the purpose of describing particular embodimenis of the invention
only, and is not intended to be limiting.
5 The present invention provides novel compositions containing nucleic
acid sequences, wherein a first sequence in the composition is a coding sequence
lor an A subunit obtained or derived from an ADP-ribosylating baccerial toxin,
and a second sequence in the composition is a coding sequence for a B subunit
obtained or derived from an .ADP-ribosyiating bacterial toxin. The fust and
10 second sequences are useful in immunization methods wherein they are delivered



extremely similar molecules, and are at least about 70-80% homologous at the
amino acid level.
The CT and LT toxins are hexamers, composed of a single molecule of an
A subunit surrounded by a doughnut-shaped ring composed of 5 molecules of the
5 3 subunit. The A subunit possesses an ADP-ribosylase activity resulting in G
protein modifications that lead to cAMP and protein Idnase A upregulation following internlization of the A subunit in a manmrialian cell. The A subunit can be nicked by exogenous proteases yielding the Al and A2 fragments linlced via a single disulfide bridge. The A subunit of CT contains a C-terminal KDEL



triggering activity, respectively. Regarding the B subunit of LT in particular,
binding to the GMl receptor on B cells results in polyclonal activation, occurs in
the absence of signiiicant proliferation, and involves the upregulation c: a
number of important molecules such as MHC class II, B7, CD40, ICAM-1 and
5 IL2-Ra. For T cells, addition of CT or LT holotoxins or recombinant 3 subunits



is a coding region for a modified, mature A subunit peptide obtained or derived
from an ADP-ribosylating exotoxin, and (b) the second nucleic acid sequence is a
coding region for a mature B subunit peptide obtained or derived from an ADP-
ribosylating exotoxin. The first nucleic acid sequence contains a coding region
5 that provides for a "modified" A subunit peptide in that the said coding region
has been genetically altered so as to delete a four amino acid residue C-termnai KDEL or RDZL motif normally found in the encoded subumil peotide.
In still a further embodiment, a composition is provided which includes



aspects of the invention, one or both of the toxin subunit peptide coding regions
can be further genetically modified to detoxify rhe subunit peptide(s) encoded
thereby. For example, genetically altered toxin mutants which have disrupted
A\DP-ribcsylat:ng acnviry, tripsin cleavage site mutations, or disrapted birding
5 activity are known in the art. See, e.g., Burnetts at al. (1994) 'Recombinant
n"iicrobial ADP-ribosylating toxins of Bordetella peniisis. Vibrio ckolerae. ana enterotoxigenic Escherichia coli: structure, function and toxoid vaccine



prime the replication reaction. The product of the first round of replication is
itself a template for subsequent replication, thus repeated successive cycles of
replication result in geometric amplification of the DNA fragment delimited by
the primer pair used,
5 Once the relevant sequences for the ADP-ribosylating exotoxin subunits
of mterest have been obtained, they can be linked together to provide one or mors conuguous nucleic acid molecules using standard cloning or molecular biology techniques. More particularly, after sequence information for the selected toxin subunit combination has been obtained, the coding sequences can be combined


w



vectors which include control sequences operably linked to the inserted sequence or sequences, thus providing expression cassettes that allow for expression of the toxin subunit peptides in vivo in a targeted subject species.



exotoxin subunit peptide coding sequences of interest, the expression cassettes can be provided in a suitable transfection vector such as a DNA plasmid vector or a viral vector for subsequent administration to a subject.. In this regard, the polynuclectide compositions of the invention can be used as standalone adjuvant



lower or fewer doses of the antigen are required to generate an eScient immune response.
As used herein, the term 'cc-administered' such as when an AD?-
nbosylating exotoxin subunit encoding adjuvant composition according :c the
5 present invention is "co-administered' with an antigen of Interest (e.g., a vaccine
w







Vh^^g^'


ccmmon allergens can also be obtained from molds or fung] such as Altemaria, Fusarium, Hormodendrum, Aspergillus, Micropolyspora, Mucor and thermophilic actinomycetes; penicillin and tetracycline are common ancibiotic


Vjl^^^


associated with colorectal cancer, gplOO or MARTI antigens associated with
melanoma, and the PSA antigen associated with prostate cancer. The p53 gene
sequence is know-n (see e.g., Harris et al. -(1986) MoL Call Biol. 6:4650-4656)
' and is deposited with GenBank under Accession No. Ml4694. Thus, the
5 adjuvant composirions of the present invention can be used to carry out
immunotherapeutic methods for treating cervical, breast, colorectal, prostate, lung cancers and melanomas.


/

isolate DNA. Polyiucleodde sequences can also be produced synthetically, rather than cloned.
w
1^


which have an integrated defective provirus (the "helper") that expresses all of
the genes of the virus but cannot package its own genome due to a deletion of the
packaging signal, known as the psi sequence. Thus, the cell line produces empty-
viral shells. Producer lines can be derived from the packaging lines which, in
5 addition to the helper, contain a viral vector which includes sequences required in



A-\V expression vectors are constructed using kno'vvn techniques to at
least provide as operatively linked components in the direction of transcription,
20 control elements including a transcriptional initiation region, the DNA of interest
and a transcriptional termination region. The control elements are selected to be functional in a mammalian cell. The resulting construct which contains the operatively linked components is bounded (5' and 3') with functional AAVITR sequences. Suitable AAV constructs can be designed using techniques well





Conventional Pharmaceutical Preparations
Formulation of a preparation comprising the polynucleotide molecules of
5 the present invention, with or without addition of an antigen composition, can be
carried out using standard pharmaceutical formulation chemistries and
methodologies all of which are readily available to the ordinarily' skilled artisan.
For example, compositions containing one or more suitable vectors can be
combined with one or more pharmaceutically acceptable excipients or vehicles to
10 provide a hquid preparation.



auxiliary substances is available in REMINGTON'S PKL\RMACEUTIC.AI SCIENCES (IVIack Pub. Co., N.J. 1991), incorporated herein by reference.
Certain facilitators of nucleic acid uptake and'or expression ('transfection
w


polylysine, polyarginine, polyomithine, spermine, spermidine, as well as conj agates of these molecules.
The formulated compositions will thus typically include one of more poiynucleotide molecule (e.g., plasraid vector) containing the coding sequences



dextran-mediated transfection, calcium phosphate precipitation, electroporation, and direct microinjection of into nuclei). However, deliver/will most typically be via conventional needle aiid svrmge for the liquid compositions and for liquid
1)^


prepared and suitably purified, the above-described plasmid vector constructs can
be coated onto carrier particles {e.g., core carriers) using a variety' of techniques
known in the art. Carrier particles are selected from materials which have a
suitable density in the range of panicle sizes typically used for intracellular
5 delivery from an appropriate particle delivery' device. The optimum carrier
W|^^^
0


15 Following their formation, core carrier particles coated with the nucleic
acid preparations of the present invention, alone or in combination with e.g., antigen preparations, are delivered to a subject using particle-mediated deliver}'
techniques.





The coated particles are administered to the subject to be treated in a maimer compatible with the dosage formulation, and in an amount that will be effective to bring about the desired adjuvant effect'immune response. The amount of the composition to be delivered which, in the case of nucleic acid


w


acid, rartaric acid, glycine, high molecular weight pclyeihyiene glycols i7EGs),
-0 and combination thereof. A thorough discussion of pharmaceuticaily acceptable
sxcipients, carriers, stabilizers and other auxiliary substances is available in REMINGTON'S PHARMACEUTICAL SCIENCES (Mack Pub. Co., NJ. 1991), irxorporated herein by referepxe.



packaged prior to use, can comprise a hermetically sealed container enclosing a
suitable amount of the particles comprising a suitable nucleic acid construct
and/or a selected antigen (e.g., to provide a multicomponent vaccine
composition). The particulate compositions can be packaged as a sterile
5 formulation, and the hermetically sealed container can thus be desiened to
preserve sterility of the formulation until use in the methods of :he invention. If
desired, the containers can be adapted for direct use in a panicle delivery device.
Such containers can take the form of capsules, foil pouches, sachets, cassertes,
and the like. Appropriate panicle delivery devices (e.g., needleless s>Tinces) are
10 described herein.
w


surface, and the densicy and kinematic viscosity of the targeted skin tissue. In this regard, optimal particle densities for use in needleless injection generally range ber.veen about 0.1 and 25 g./cm3. preferably between about 0.9 and 1.5 g.'cm3 and
h
w

. r/
Enhancing Immune Responses
5 In another embodiment of the invention, a method for enhancing an
immune response against a co-administered antigen of interest is provided. In essence, the method entails (a) administering an antigen of interest to a subject.



additionai or arciliary" components to the subjec:. For rxample, a secondary
30 vaccine ccmposinon can be administered, wherein the secondary' composition can
comprise a nucleic acid vaccine, or the secondan' vaccine composition can
1"*


Experimental
Below are examples of specific embodiments for canning out the present
20 invention. The examples are offered for illustrative purposes only, and are not
intended to limit the scope of the present invention in anyway.
Efforts have been made to ensure accuracy with respect to numbers used (e.g., amounts, temperatures, etc.). but some experimental error and deviation should, of course, be allowed for.
4S


In order tc facilitate insertion into an expression vector, Primers 1 and 2
contain extra sequences at their 5' ends (outside the region of homology to the
CTA coding sequence) which include recognition sites for Xhel and BamHI,
20 respectively. Primers 1 and 2 were designed to lead to PCR generation of a
fragment of the A subunit coding sequence starting a: nucleotide position 16- and ending at nucleotide position S86 (GenBank Accession PD30O53). This region



Primer 4: 5'— CCT GGA TCC TTA ATT TGC CAT ACT AAT TGC —3' (SEQ ID NO: 10).
In order to facilitate insertion-into an expression vector, Primers 3 and 4
5 contain extra sequences at their 5' ends (outside the region of homology to the
CTB coding sequence) which include recognition sites for Nhel and BamKL
respectively. Primers 3 and 4 were designed lo lead to PCR generation of a
fraement of the B subunit coding sequence starring at nucieotide position 946 and
ending at nucleotide position 1257 (GenBank Accession #D30053). This region
i G encompasses the entire coding sequence for the mature subunit B peptide but
k does not include the sequence encoding the bacterial signal peptide found at the



('minus KDEL). respectively. The parental cloning vector pWRG7054 contains the human cvtomegalovirus immediate early promoter with the associated intrcn A sequence. In addition, the coding sequence for the signal peptide of human tissue plasminogen acdvator is included in pWRG7054 to allow for the secretion


■k^^


respectively. Primers 6 and 7 were designed to lead to PCR generation of a
fragment of the A snbunit coding sequence starting at nucleotide position 145 and



More panicularly, the sequence from the RNA segment #7 (rha: encodes
30 the M2 protein) of influenza virus strain A'Xagoshima 10/95 (H3N2) was used as
a model to design PCR primers to facilitate cloning of the manure M2 coding
53


sequence from AySydney/5/97 (H3N2). The A/Kagoshima sequence was used for primer design since the sequence of RNA segment 7 of A'Sydney has not yet been determined. The high degree of conservation among M2 sequences was



after which. 0.5µl of reverse transcriptase from the kit was added. The reaction was incubated at 37°C for 15 minutes to complete the reverse transcription step. The PCR reaction step was completed by addition of the following



4,0 \xg of DNA per mg of gold, and a single batch contained 26 mg of gold. DNA was precipitated onto the gold particles by addition of a 1/10 volume of 10% CaCl2 during continuous agitation of the tube on a rotary/mixer. DNA-gold complexes were washed three times with absolute ethanol, and then injected into



Formulation #5: pM2-FL DNA vector and pPJV2002 coprecipitated onto single batch of gold (2 |ig pM2-FL DNA per mg gold, and 1 µg of pPJV2002 DNA per mg gold), 0.5 mg gold per cartridge; and
V


washed three times, and a streptavidin-horse radish peroxidase conjugate (Southern Biotechnology) diluted to 1 :8000 in PBS/0.1 % Tween-20 was added and the plate incubated for 1 hour at room temperature. Following three

J o


As' can be seen, al! experimental groups immunized with a formulanon containing cne or more of the CT-encading adjuvant vectors (Fcnnulations #2-6')



Example 4
Enhancement of .Antigen-Specific Cellular Responses to a DNA Vaccine
Encoding the Hepatitis B Surface Antigen (HBsAg) Using
Adjuvant Plasmid Vectors Encoding the CT-A and CT-B Subunit Peptides.
A Hepatitis B surface antigen (HBsAg) vector plasmid was construacted as follows. To generate the HbsAg coding region, the p.AM6 constract (obtained from the Amxerican Type Culture Collection "ATCC'}



with pWRG712S (1 jig DRV0.5 mg gold per delivery). Mice (4 per expenmental group) were immunized and boosted at 4 weeks, then sacrificed at 2



10% fetal bovine serum (FBS) for 1-2 hr at RT. The medium was removed and
spleen cells dispensed into the wells with a total of 1x106 cells per well. For
wells in which less than 1xlO6 cells from immunized animals was added cells
from naive animals were used, to bring the total to 1x106 Cells were incubated
5 overnight in a tissue culture incubator in the presence of the peptide as described
above. The plates were then washed 2 time witli PBS and 1 time with distilled



The cellular immune responses measured in the two groupS OF mace
indicate a significant erhancement of cellular responses by the CT adjuvant
20 vectors. More particularly, the results of the CDS-specific IFN-v ELISA assay
are depicted below in Table 3.
63


20. adjuvanted formulation is indicative of a greater amount of IFY-ý secreted by
these cells in response to antigen. Cel]s from naive mice did not yield a
iL measurable OD value in the IFN-ý ELISA.
The results of the CD8-specific IFN'-ý EIJSPOT assay are depicted below in Table 4.
■^ ■:: ^'.)
64


The.above data demonstrate that the novel adjuvant compositions ox the
present invention have a potent ability to enhance the cellular immune responses
20 to a coadministered antigen, in this case a HBsAg expressed from a DNA
vaccine.
65


Example 5
Enhancement of Humoral and Cellular Immune Responses to HTV-1 gpl20 Antigen Using Simultaneous Delivers of a gpl20 .Antigen Vector
and CT.VCTB Adjuvant Vectors. 5
A plasmid vector endoding HTV-l gpl20 was constructed as follows. The vector was constructed starting with a Bluescript (Stxatagene, La Jolla, CA) plasmid backbone, the human cytomegalovirus (hCMTV) immediate early



product with the truncation point lying 12S amino acid residues downstream of the gp 120/gp41 processing site.
A second plasmid vector encoding HIV-l rev. termed "pC-rev"' herein.



pWRG7054 DNA per mg gold, and 1 fig each of pPJV2002 and pPJV2003 DNA per mg gold), 0.5 mg gold per cartridge;



V
Serum antibody responses to the HIV gp 120 antigen were tested using an ELISA assay on specimens collected at week 5 and week 6.5 (post-prime and post-boost, respectively). For the ELISA, Costar hih binding ELAplates were



stimulated in medium alone (negative control), "or in medium with 1 µg/ml of a HIV gpl20 peptide having the following sequence: RIQRGPGRAPVITGK (SEQ ID NO: 21). Following a 24 hour incubation at 37°C in 5% CO2, the plates were
km


anrigen in an animal model. In addition, rhe enhanced IFX-y production seen iu these studies indicates that use of the CT adjuvant vector combinations of the present invention provides a robust Thl-like immune response m :he in-iunized animals.
71


Example 6
Enhancement of .Antibody Responses to Hepatitis B Core and Surface
Antigens Using Simultaneous Delivery of a Vector Encoding HBcAs
and HBsAe with CTA/CTB Adjuvant Vectors.



polyA sequence (bGHpA) were each obtained from the JW4303 vector construct (gift of Dr. Harriet Robinson, University of Massachusetts) and inserted into a plasmid backbone. The resultant construct was cut with 'Nhel filled with polvmerase and then cut with BamHI to generate a vector fragment



Formulation #1: Control, the HBcAg/IIBsAg vector (pWRG7193) alone, 2 µg DNA per mg gold, 0.5 mg gold per cartridge; and



2(: control group (Formulation =1) and adjuvant test group (Formulation;=21 were
2S5 and 662 mIUVml, respectively, demonstrating the ability of the present
adjuvant plasmids (pPJV2006 and pPJV2(303) to augment immune responses :o
an antigen er.coded by a separate vector.


Example 7
Enhancement of Cellular Thl-Like Immune Response to a DNA
Vaccine Usine Plasmid Vectors Encoding CT or LT Subunits,
5 The pJvI2-FL DNA vaccine vector encoding the M2 protein of influenza A
virus was employed to test the adjuvant effects of the pPJV2002. pPJV2003, ppJV'2004, pPJV2005, pPJV'2006 and pPA'2007 adjuvant vectors in the context cf particle-mediated DNA vaccination. Particle-mediated DNA vaccination was performed by precipitating the M2 DNA vaccine vector, either v/ith our without
\f0


Formulation #2: pM2-FL DNA vector combined with the CTA and CTB (pPJV2002 and pPJV2003) DNA vectors prior to precipitation onto a single batch. of gold, 2.1 [ig total DNA per mg gold (1.0 µg of each DNA adjuvant vecicr per mg gold, 0.1 µg pM2-FL), 0.5 mg gold per cartridge;



of gold, 2.1 µg total DNA per mg gold (1.0 µg of each DNA adjuvant vector per mg gold, 0.1 |ig pM2-FL), 0.5 mg gold per cartridge;



PowderJect® XR-1 particle delivery device (Powder: ect Vaccines Inc., Madison. \VI) at a helium pressure of 400 p.s.i,. Serum samples were collected two weeks following the second or booster immunization.
Individual serum samples were assayed for M2-3peciiic antibody
5 responses for both IgGl and IgG2a subclasses usmg the ELISA assay of Example
3 above for the determina::on of total IgG titer, except that a secondary .antibody conjugate specific for eidger IgGl or IgG2a was employed. The goat anti-mouse



As can be seen with reference to Table 5, addition of either of the A or B subunits, or the various combinations of A and B subunits to the M2 DNA vaccine formulation resulted in sienificant reductions in the IgGl-to-l2:G2a ratio



v/ith 1.5 mM MgCL (Promega Corp., Madison, WT); 0.400 [iM of each primer; 200 [iM or each cLNTP (USB Inc., Cleveland, OH); 2,5 µg Taq polymerass (Promega Corp., Madison, WD; i.O ng template DNA; water to 100 µl; and a



and EcoR1 to generate a core antigen insertion fragment; the modified pWRGVUS plasmid was cut with Pstl and Mfel to generate a vector fragment, and the core antigen insertion fragment was ligated into the vector fragment, resulting in the dual surface/core antigen plasmid construct.



Fonnulution #3: ("CT w/o TPA") 1 µg dual surface/core antigen DNA plasmid vector, 0.5 jig CTA w/o TPA DNA plasmid vector, 0.5 [ig CTB w/'o TPA DNA plasmid vector;


Formulation #12: ("LTB") 1µg dual surface/core antigen DNA plasmid vector, 1 µg pJV2O05 (LTB) DNA plasmid vector; and
w


Finally, the clearlv observable difference in adjuvant effect between the
secreted (Formulations #2 and =8) and the non-secreted ('Formulaticns -3 and -9)
heins establish that the observed adjuvant effects are not due :o CvG monts
within the adjuvant vectors since the signai-ccntaining and non signai-ccntaining
30 vectors do not have any difference in bacterial DNA (CpG) content yet exhibit
S5

significant differences in their ability to augment surface antigen-specific IFN-7 responses.
In a second study, the above-described DNA vaccine formulations were
adminisiered to eight groups of mice using the PowderJect® XR-1 particle
5 delivery device (PowderJect Vaccines Inc., Madison, UT). Each experimental
group contained 5 animals, and each ammal received two immunizations with the


combinations of the present adjuvant plasmid vectors to provide vaccine compositions. After immunization, the immunized animals were challenged with HSV-2 virus. and the protective effect of the various vaccine compositions was
determined.
1

from the HSV-2 genome, for example the genomic region spanning from
approximately nucleotide 114589 to 134980 of the HSV-2 genome, or anEcoRI
fragment that spans nucleotides 110931 to 139697 of the HSV-2 genome. The
sequence of the HSV-2 genome is available form published sources, for example
5 the sequence deposited with GenBank un der Accession Number NC_001798.



In the study, the above-described DNA vaccine fcrmulatains were administered to five different groups of mice using the PowderJect XR-1
15 panicle delivery device (PowderJect Vaccines Inc., Madison, WT). Each
experimental group contained 12 animals, and each animal received two immunizations (single shot applied to the abdomen) with the respective formulation with a four vveelc restmg period beUveen inmiunizaiions. A sixth group of mice was established as a negative (naivej control, and did not receive
20 any vaccinations. 4 mice from each group were sacked 2 weeks arier the second
immunization and used for IFN-y ELISPOT assays (data not shown).
Two v/eeks post second immunization, all remaining mice (8/group) were challenged with 1X10° FPU of HSV-2 virus, strain MS, via intra-nasal insullation. The survival graph depicting the results of the challenge study is
25 depicted in Figure 14. As can be seen, 100% of the naive animals succumbed
within 4 days post challenge. The naive animals are depicted on the graph by the curve. In addition, 100% of the animals receiving the ICP27 antigen plasn:d vector alone (Formulation #1) died within 7 days post challenge. The animals
receiving Formulation #1 are depicted on the graph by the curve. In marked
30 contrast, the 25% (2/S) of the anim.als receiving the ICP27 piasnrid adjuvanicd
with the low dose CT (Formulation 3) were protected tcm the viral challenge,
89

and 38% (3/8) of the animals receiving the ICP27 adjuvanted with the high dose
CT (Formulation #2) were protected from the viral challenge. The animals
receiving Formulation #3 are depicted on the graph by the (■) curve. The
animals receiving Formulation #2 are depicted on the graph by the (♦) cruve.
5 Finally, both the low dose LT-adjuvanted (Formulation =5) and the high dose LT-
adjuvanted (Formulation #4) ICP27 vaccine provided complete (100%) protection in the immunized animals. The animals receiving Formulation #5 are
depicted on the graph by the curve. The animals receving Formulation =4
are depicted on the graph by the (O) cur\'e.
10
Accordingly, novel polynucleotide adjuvant molecules, compositions
comprising those adjuvant molecules, and conventional and nucleic acid
15 immunization techniques have been described. Although preferred embodiments
of the subject invention have been described in some detail, it is understood that obvious variations can be made without departing from the spirit and the scope of the invention as defined by the appended claims.



rit and the scope of the invention as defined by the appended claims.




Claims
What iS claimed is:
5 1.. A composition comprising first and second nucleic acid
sequences, wherein said first nucleic acid sequence is a trucated A subunit
coding region obtained or derived from a bacterial .ADP-ribosylating exotoxin.
and said second nucleic acid sequence; is a truncated B subunic coding region
obtained or derived from a bacterial .ADP-ribosylaiing exotoxin, with the proviso
10 that each of said truncated subunit coding regions has a 5' deletion and encodes a
subunit peptide not having an amino terminal bacterial signal peptide.
2.. The composition of claim 1, wherein said first and second nucleic
acid sequences are present in a single nucleic acid construe:. 15
3. The composition of claim 2, wherein said nucleic acid construct is
a plasmid vector
4. The composition of claim 2, wherein the first and second nucleic
20 acid sequences are operably linked to a transcriptional control element.
5. The composition of claim 4, vvherein said transcriptional conrrol
element is a heterologous promoter.
25 6. The composition of claim I wherein said first and second nucleic
acid sequences are present in separate nucleic acid constructs.
7. The ccmposition of claim 6, vvherein said separate nucleic acid
constructs are piasmid vectors.
91

8. The composition of claim 1, wherein the tmncated subunit coding regions are obtained or derived from the same bacterial .ADP-ribosylating exotoxin.
5 9. The composition of claim 8, wherein said bacterial ADP-
ribosylaring exotoxin is a cholera toxin (CT).
10. The composition of claim S, wherein said bacterial ADP-
ribosyating exotoxin is an E. coli heat labile enterotoxin (LT).
10
11. The composition of claim 1, wherein at least one of the truncated
subunit coding regions has been genetically modified to detoxify the subunit
peptide encoded thereby.
15 12. The composition of claim 11, wherein :he truncated A subunit
coding region has been genetically modified to disrjp: or macrivate .ADP-ribosyi
transferase activity in the subunit peptide encoded thereby.
13. The composition of claim 1, whersin the truncated A subunit
20 cocing reeion has been further senetically modified so as to delete a C-terminal
KDEL or RDEL motif in the subunit peptide encoded thereby.
14. The composition of claim 1 further comprising an antigen of interest.
15. The composirion of claim 14, wherein said antigen is fron: a bacterial. \'iral or parasitic pathogen.
15. The composition of claim 1, further compriding a third nucleic
92

17. The composirion of claim 16, vvherein said antigen is fron a bacterial, vixal or parasitic pathogen.
w

wo 03/004055 PCT/USOl/43151
27. The composition of claim 25, wherein the core carrier particle comprises a metal.

94

35. The composition of claim 33, wherein the first and second nucleic acid sequences are operably linked to a transcnptional control element.


44. The composition of claim 32, wherein the modified A subunit
coding region and the B subunit coding region have each been truncated by a 5'
deietion whereby each of said truncated subunit coding regions encodes a subunit
peptide not having an amino terminal bacterial signal peptide.
5
45. The composition of claim 32 furher ccmprising an antigen of
interest.
46. The composition of claim 45, wherein said antigen is from a
10 bacterial, viral or parasitic pathogen.
47. The composition of claim 32 further comprising a third nucleic
acid sequence that encodes an antigen of interest.
If 4S. The composition of claim 47. wherein said antigen is from a
bacteriaL viral or parasitic pathogen.
49. The composition of claim 47. wherein said third nucleic acid
sequence is present in a nucleic acid construct that does not contain said first or
20 said second nucleic acid sequence.
50. The composition of claim 49, wherein the nucleic acid construe:
W
containing the third nucleic acid sequence is a plasmid vector.
25 51. The composition of claim 47, wherein said third nucleic acid
sequence is present in a nucleic acid construct that also contains at least one of said first or said second nucleic acid sequence.
52. The composition of claim 51. wherein the nucleic acid construct
36 containing the third nucluic acid sequence is a pasmid vector.
96

WO 03/004055 PCT/USOl/431^1
53. The composition of claim 32, wherein said composition is in a
particulate form.
54. The composition of claim 53, wherein said paniculate ccmposiiion
5 is suitable for transdermal deliver/ via a particle delivery device.
55. The composition of claim 52 further comprising a
pharmaceutically accepable vehicle or excinienc.
110 56. A com.position according to claim 55. wherein the first and second
nucleic acid sequences are coated onto a core carrier panicle.
57. The composition of claim 56, wherein the core carrier panicle has
an average diameter of about 0.1 to about 10µm.
15
58. The composition of claim 56, wherein the core canier pvirticle
comprises a metal.
59. The composition of claim 5S, wherein the metal is gold.
20
60. A panicle delivery device, wherein said device is loaded with a
paniculate vaccine composition as defined in claim. 54.
61. The composition of claim 32 further comprising a transfecrion
25 facilitating agent.
62. The composition of claim 61, wherein the n-ansfection facihtating
agent is a liposome.
3} 63. Use of a composition com.pnsmg a first and second nucleic acid
sequence, each said sequence including a coding region for a suburjt from a
97

NVO 03/004055 PCT/TSOl/43151
bacterial ADP-ribosylating exotoxin in the manufacture of a medicament for
enhancing an immune response in a vertebrate subject against an antigen of
interest in the said subject by administering the antigen of interest and the said
composition to the subject whereby the toxin subunits encoded by the nrsi and
5 second nucleic,acid sequences are expressed in an amount sufficient to elicit an
enhanced immune response against the antigen, wherein said nrst nucleic acid
sequence comains a truncated A subunit coding region obtained or derived from a
bacterial ADP-ribosylating exotoxin, and said second nucleic acid sequence
contains a truncated B subunit coding region obtained or derived from a bactenal
10 .ADP-ribosylating exotoxin, with the proviso that each of said truncated subunix
coding regions has a 5' deletion and encodes a subunit peptide not having an amino terminal bacterial signal peptide.
64. Use according to claim 63, wherein the antigen of interest and the
15 composition are administered to the same site in the subject.
65. Use according to claim 63, wherein the antigen of interest and the
composition are administered concurrently.
20 66. Use according to claim 65, wherein the antigen of interest and the
composition are combined to provide a single vaccine composition.
67. Use according to claim 63, wherein the antigen of interest is from a bacterial, viral or parasitic pathogen. 25
6S. Use according to claim 67, wherein a third nucleic acid sequence is admimsiered :o the subject and the third sequence encodes said antigen of intrest.
?'.' 69. Use according to claim 63, wherein :he first and second nucleic
acid sequences are administered to the subject in paniculate form.
98

wo 03/004055 PCT/US01/4315I
70. Use according to claim 69, wherein the composirion containing the first and second nucleic acid sequences are coated onto a core carrier panicle and administered to the subject using a particle-mediated delivery technique.
5 71. Use accordine to claim 63, v/herein the subiect is human.
72. Use of a composition comprising a first and second nucleic acid
sequence, each said sequence including a coding region for a subunit from a .
bacterial.ADP- ribosylaning exotoxin in the manufacture of a medicaracn: for
10 enhancing an immune response in a vertebrate subject against an antigen of
interest in the said subject by administering the antigen of interest and the said ■ composition to the subject whereby the toxin subunits encoded by the first and second nucleic acid sequences are expressed in an amount sufficient to elicit an enhanced immune response against the antigen, wherein said first nucleic acid
15 sequence contains a modified A subunit coding region obtained or derived from a
bacterial ADP-nbosylating exotoxin, and said second nucleic acid sequence contains a B subunit coding region obtained or derived from a bacterial .VDP-ribosylating exotoxin, with the proviso that said modifed A subunit coding region and said B subunit coding region each encode a mature subunit peptide,
20 and with the further proviso that the modified A subunit coding region has been
genetically modined so as to delete a C-terminal KDEL or RDEL motif in the subunit peptide encoded thereby.
73. Use according to claim 72, wherein the antigen of interest and the
25 composition are administered to the same site in the subject.
74. Use according to claim 72. wherein the antigen of interest and ihe
composition are administered concurrently.
jvJ 75. Use according to claim 74, wherem the antigen of interss: and the
composition are com.bmed to provide a single vaccine compcsition.
99

76. Use according to claim 72, wherein the antigen of interest is from
a bacterial, viral or parasitic pathogen.
77. Use according to claim 76, wherein a third nucleic acid sequence
5 is administered lo the subject and the third sequence encodes said antigen of
interest.
78. Use according to claim 72, wherein the first and second nucleic
acid sequences are administered to the subject m particulate form.
10
79. Use according to claim 7S, wherein the composition comprising
the first and second nucleic acid sequences are coated onto a core carrier panicle
and administered to the subject using a particle-mediated delivery technique.
15 SO. Use according to claim. 72, wherein the subject is human.
SI. A method for enhancing an hnmune response against an antigen of interest in a subject, the method comprising:
(a) administering the antigen of interest to the subject;
20 (b) providing an adjuvant composition comprising first and second
nucleic acid sequences, wherein said first nucleic acid sequence is a truncated A subunit coding region obtained or derived from a bacterial .ADP-ribosylating exotoxin and said second nucleic acid sequence is a truncated B subunit coding resion obtained or derived from a bacterial -ADP-ribosvlatins exotoxin, with the
25 proviso that each of said truncated subunit coding regions has a 5' deletion and
encodes a subunit peptide not having an amino tenninal bacterial signal peptide; znc
(c) administering said adjuvant composition to the subject, whereby upon introduction to the subject, the first and second nucleic acid sequences are
30 expressed to provide subunit peptides in an amount sufficient to elicit said
enhnced immune response against the antigen of interest.
100

S2. A method for enhancing an immune resDonse asainst an anti2en of interest m a subject, the method comprising:
(a) adminisering the antigen of interest to the subject;
(b) providing an adjuvant composition comprismg first and second
5 nucleic acid sequences, wherein said first nucleic acid sequence is a modified A
subunit coding reg:on obtained or derived from a bacterial .AOP-ribosyiatirg
exotoxin, and said second nucleic acid sequence is a 3 subumt coding region
obtained or derived from a bacteria! ADP-ribosvlatine exotoxin, with the proviso
that said nocified A subunit coding region and said 3 subunit coding region each
10 encode a mature subumt peptide, and with the further proviso that the mocitied A
subunit coding region has been genetically modified so as to delete a C-terminal
KDEL or RDEL motif in the subumt peptide encoded thereby; and
(c) administering said adjuvant composition to the subject, whereby
upon introduction to the subject, the first and second nucleic acid sequences are
15 expressed.to provide subunit peptides in an amount sufficient to ehcit said
enhanccd immmunc response against the antigen of inicrcst.
10 i

83. A composition substantially as herein described with reference to the accompanying drawings.


Documents:

798-chenp-2003 abstract.pdf

798-chenp-2003 claims granted.pdf

798-chenp-2003 description (complete) granted.pdf

798-chenp-2003 form 1.pdf

798-chenp-2003 form 3.pdf

798-chenp-2003 form 5.pdf

798-chenp-2003 petition.pdf

798-chenp-2003 power of attorney.pdf

798-chenp-2003-claims.pdf

798-chenp-2003-correspondnece-others.pdf

798-chenp-2003-correspondnece-po.pdf

798-chenp-2003-description(complete).pdf

798-chenp-2003-drawings.pdf

798-chenp-2003-form 1.pdf

798-chenp-2003-form 18.pdf

798-chenp-2003-form 3.pdf

798-chenp-2003-pct.pdf


Patent Number 229152
Indian Patent Application Number 798/CHENP/2003
PG Journal Number 12/2009
Publication Date 20-Mar-2009
Grant Date 13-Feb-2009
Date of Filing 22-May-2003
Name of Patentee POWDERJECT VACCINES, INC
Applicant Address 585 SCIENCE DRIVE, MADISON, WISCONSIN 53711,
Inventors:
# Inventor's Name Inventor's Address
1 JOEL R. HAYNES 585 SCIENCE DRIVE MADISON, WISCONSIN 53711,
2 JOSHUA E. ARRINGTON 585 SCIENCE DRIVE MADISON, WISCONSIN 53711,
PCT International Classification Number A61K39/39
PCT International Application Number PCT/US01/43151
PCT International Filing date 2001-11-26
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 09/724,315 2000-11-27 U.S.A.