Title of Invention

AN ANTI-HTNFSF13B HUMAN ANTIBODY

Abstract Human monoclonal antibodies that specifically bind to TNFSF13b polypeptides are disclosed. These antibodies have high affinity for hTNFSF13b, a slow off rate for TNFSF13b dissociation and neutralize TNFSF13b activity in vitro and in vivo. The antibodies of the invention are useful in one embodiment for inhibiting TNFSF13b activity in a human subject suffering from a disorder in which hTNFSF13b activity is detrimental. Nucleic acids encoding the antibodies of the present invention, as well as, vectors and host cells for expressing them are also encompassed by the invention.
Full Text The present invention is about antagonistic anti-hTNFSF13b human antibodies. TNF
family ligands are known to be among the most pleiotropic cytokines. inducing a large
number of cellular responses, including proliferation, cytotoxicity, anti- viral activity,
immunoregulatory activities, and the transcriptional regulation of several genes. The TNF
family of cytokines and receptors has undergone a large expansion in the last few years
with the advent of massive EST sequencing. TNFSF13b is the official name adopted by
the TNF Congress for BLyS, TALL-1, BAFF, THANK, neutrokine-a, and zTNF (for
review see Locksley et al. Cell 2001 104: 487). HumanTNFSF13b (hTNFSF13b) is a 285-
amino acid type II membrane-bound protein that possesses a N- terminal cleavage site
that allows for the existence of both soluble and membrane bound proteins. Functionally,
TNFSF13b appears to regulate B cell and some T cell immune responses.
Studies of septic shock syndrome and other disorders arising from overproduction of
inflammatory cytokines have shown that an afflicted host will often counter high cytokine
levels by releasing soluble cytokine receptors or by synthesizing high-affinity anti-
cytokine antibodies. Methods of treatment that mimic such natural responses are
considered as viable therapeutic approaches for alleviating cytokine-mediated disease.
Thus, there is a well-recognized need for human antibodies that bind cytokines. such as
TNFSF13b, that are involved in the regulation of cellular immune processes with high
affinity and that have the capacity to antagonize the activity of the targeted cytokine in
vitro and in vivo. Although international patent application WO00/50597 non-
descriptively discloses antibodies directed at TNFSF13b, that application does not
specifically describe the structural or functional characteristics of such antibodies.
The present invention provides anti-hTNFSF13b human antibodies, or antigen- binding
portions thereof. The antibodies of the invention are characterized by high affinity
binding to TNFSF13b polypeptides, slow dissociation kinetics, and the capacity to
antagonize at least one in vitro and/or in vivo activity associated with TNFSF13b
polypeptides. The present invention also provides anti-hTNFSF13b human antibodies
comprising a polypeptide selected from the group consisting of a polypeptide as shown in
SEQ ID NO: 2, a polypeptide as shown in SEQ ID NO: 4, a polypeptide as shown in SEQ
ID NO: 6, a polypeptide as shown in SEQ ID NO: 8, a polypeptide as shown in SEQ ID
NO: 10, a polypeptide as shown in SEQ ID NO: 12, a polypeptide as shown in SEQ ID
NO: 14, and a polypeptide as shown in SEQ ID NO: 16.
In another embodiment, the invention provides an isolated anti-hTNFSF13b
human antibody which binds to a hTNFSF13b polypeptide and dissociates from the
hTNFSF13b polypeptide with a Koff rate constant of 1 X 10-4 s-1 or less, as determined
by surface plasmon resonance, or which inhibits TNFSF13b induced proliferation in an in
vitro neutralization assay with an IC50 of 1 x 10-8 M or less.
In an preferred embodiment, the invention provides an isolated anti-hTNFSF13b
human antibody that has the following characteristics:
a) inhibits TNFSF13b induced proliferation in an in vitro neutralization assay
with an IC50 of 1 x 10-8 M or less;
b) has a heavy chain CDR3 comprising the amino acid sequence of SEQ ID
NO: 16; and
c) has a light chain CDR3 comprising the amino acid sequence of SEQ ID
NO:8.
The invention also provides methods of treating or preventing acute or chronic
diseases or conditions associated with B cell and some T cell activity including, but not
limited to, autoimmune disorders, such as systemic lupus crythematosus, rheumatoid
arthritis, and/or neoplasia comprising the administration of an anti-hTNFSF13b human
antibody of the present invention.
In another embodiment, the present invention provides sequences that encode the
novel anti-hTNFSF13b human antibodies, vectors composing the polynucleotide
sequences encoding anti-hTNFSF13b human antibodies, host cells transformed with
vectors incorporating polynucleotides that encode the anti-hTNFSF13b human antibodies,
formulations comprising anti-hTNFSF13b human antibodies and methods of making and
using the same.
In another embodiment, the present invention provides the epitope of the antigen
to which the novel anti-hTNFSF13b human antibodies bind. Thus, the invention also
provides a use of an antibody that binds the epitope of the present invention thereby
neutralizing the TNFSF13b activity for the treatment or prevention of acute or chronic
diseases or conditions associated with B cell and some T cell activity including, but not
limited to, autoimmune disorders, such as systemic lupus erythematosus, rheumatoid
arthritis, and/or neoplasia.
The invention also encompasses an article of manufacture comprising a packaging
material and an antibody contained within said packaging material, wherein the antibody
neutralizes TNFSF13b activity for treatment or prevention of a human subject suffering
from a disorder in which TNFSF13b activity is detrimental, and wherein the packaging
material comprises a package insert which indicates that the antibody neutralizes by
binding an epitope of TNFSF13b, wherein the epitope comprises lysine at position 71,
threonine at position 72, tyrosine at position 73, and glutamic acid at position 105; and a
package insert that provides for administration of the dosage form that results in
neutralizing TNFSF13b activity.
Fig. 1. Graph illustrating the inhibition of hTNFSF13b and IL-1 induced
proliferation of Tl 165.17 cells by human antibody 4A5-3.1.1 -B4.
Fig. 2. Graph illustrating the neutralization of hTNFSF13b induced proliferation
by human antibody 4A5-3.1.1 -B4 in primary human B cells stimulated with anti-lgM.
In order that the present invention may be more readily understood, certain terms
are first defined.
An antibody is an immunoglobulin molecule comprised of four polypeptide
chains, two heavy (H) chains (about 50-70 kDa) and two light (L) chains (about 25 kDa)
inter-connected by disulfide bonds. Light chains are classified as kappa and lambda.
Heavy chains are classified as gamma, mu, alpha, delta, or epsilon, and define the
antibody's isotype as IgG, IgM, IgA, IgD, and IgE, respectively. Each heavy chain is
comprised of a heavy chain variable region (abbreviated herein as HCVR) and a heavy
chain constant region. The heavy chain constant region is comprised of three domains,
CH1, CH2, and CH3 for IgG, IgD and IgA, and 4 domains, CH1, CH2, CH3, CH4 for
IgM and IgE. Each light chain is comprised of a light chain variable region (abbreviated
herein as LCVR) and a light chain constant region. The light chain constant region is
comprised of one domain, CL. The HCVR and LCVR regions can be further subdivided
into regions of hypervariability, termed complementarity determining regions (CDRs),
interspersed with regions that are more conserved, termed framework regions (FR). Each
HCVR and LCVR is composed of three CDRs and four FRs, arranged from amino-
terminus to carboxy-terminus in the following order: FR1, CDR1, FR2, CDR2, FR3,
CDR3, FR4. The assignment of amino acids to each domain is in accordance with well
known conventions. [Rabat, et al, Sequences of Proteins of Immunological Interest, Fifth
Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242
(1991); Chothia, et al., J. Mol. Biol. 196:901-917 (1987); Chothia, et al., Nature 342:878-
883 (1989)]. The functional characteristics of the antibody to bind a particular antigen are
determined by the CDRs.
In the present disclosure the term "antibody" is intended to refer to a monoclonal
antibody per se. A monoclonal antibody can be a human antibody, chimeric antibody,
humanized antibody, Fab fragment, Fab' fragment, F(ab')2, or single chain FV fragment.
Preferably the term "antibody" refers to human antibody.
The term "human antibody" includes antibodies having variable and constant
regions corresponding to human germline immunoglobulin sequences. Human antibodies
have several advantages over non-human and chimeric antibodies for use in human
therapy. For example, the effector portion of a human antibody may interact better with
the other parts of the human immune system (e.g., destroy the target cells more efficiently
by complement-dependent cytotoxiciry (CDC) or antibody-dependent cellular cytotoxicity
(ADCC)). Another advantage is that the human immune system should not recognize the
human antibody as foreign, and, therefore the antibody response against such an injected
antibody should be less than against a totally foreign non-human antibody or a partially
foreign chimeric antibody. In addition, injected non-human antibodies have been reported
to have a half-life in the human circulation much shorter than the half-life of human
antibodies. Injected human antibodies will have a half-life essentially identical to
naturally occurring human antibodies, allowing smaller and less frequent doses to be
given.
The term "hTNFSF13b" refers to the human form of a member of the tumor
necrosis factor family of ligands described in international patent applications
WO98/18921 and WOOO/50597 (referred to therein as neutrokine-a). The term
"TNFSF13b" is intended to encompass hTNFSF13b as well as homologs of hTNFSF13b
derived from other species. The terms "hTNFSF13b" and "TNFSF13b" are intended to
include forms thereof, which can be prepared by standard recombinant expression
methods or purchased commercially (Research Diagnostics Inc. Catalog No. RDI-3113,
rhuBAFF, Flanders, N.J.) as well as generated synthetically.
The phrase "biological property", "biological characteristic", and the term
"activity" in reference to an antibody of the present invention are used interchangeably
herein and include, but are not limited to, epitope affinity and specificity (e.g., anti-
hTNFSF13b human antibody binding to hTNFSFl 3b), ability to antagonize the activity of
the targeted polypeptide (e.g., TNFSF13b activity), the in vivo stability of the antibody,
and the immunogenic properties of the antibody. Other identifiable biological properties
or characteristics of an antibody recognized in the art include for example, cross-
reactivity, (i.e., with non-human homologs of the targeted polypeptide, or with other
proteins or tissues, generally), and ability to preserve high expression levels of protein in
mammalian cells. The aforementioned properties or characteristics can be observed or
measured using art-recognized techniques including, but not limited to ELISA,
competitive ELISA, surface plasmon resonance analysis, in vitro and in vivo
neutralization assays (e.g., Example 2), and immunohistochemistry with tissue sections
from different sources including human, primate, or any other source as the need may be.
Particular activities and biological properties of anti-hTNFSF13b human antibodies are
described in further detail in the Examples below.
The phrase "contact position" includes an amino acid position in the CDR1,
CDR2 or CDR3 of the heavy chain variable region or the light chain variable region of an
antibody which is occupied by an amino acid that contacts antigen. If a CDR amino acid
contacts the antigen, then that amino acid can be considered to occupy a contact position.
"Conservative substitution" or "conservative amino acid substitution" refers to
amino acid substitutions, either from natural mutations or human manipulation, wherein
the antibodies produced by such substitutions have substantially the same (or improved or
reduced, as may be desirable) activity(ies) as the antibodies disclosed herein.
The term "epitope" as used herein refers to a region of a protein molecule to which
an antibody can bind. An "immunogenic epitope" is defined as the part of a protein that
elicits an antibody response when the whole protein is the immunogen.
The term "binds" as used herein, generally refers to the interaction of the antibody
to the epitope of the antigen. More specifically, the term "binds" relates to the affinity of
the antibody to the epitope of the antigen. Affinity is measured by Kd.
The term "inhibit" or "inhibiting" includes the generally accepted meaning, which
includes neutralizing, prohibiting, preventing, restraining, slowing, stopping, or reversing
progression or severity of a disease or condition.
The term "neutralizing" or "antagonizing" in reference to an anti-TNFSF13b
antibody or the phrase "antibody that antagonizes TNFSF13b activity" is intended to refer
to an antibody or antibody fragment whose binding to TNFSF13b results in inhibition of a
biological activity induced by TNFSF13b polypeptides. Inhibition of TNFSF13b
biological activity can be assessed by measuring one or more in vitro or in vivo indicators
of TNFSF13b biological activity including, but not limited to, TNFSF13b-induced
proliferation, TNFSF13b-induced immunoglobulin secretion, TNFSF13b-induced
prevention of B cell apoptosis, or inhibition of receptor binding in a TNFSF13b receptor
binding assay. Indicators of TNFSF13b biological activity can be assessed by one or
more of the several in vitro or in vivo assays known in the art. (see, for example, Moore,
P.A., et al., Science, 285:260-263 (1999); Schneider, P., et al.,J. Exp. Med., 189:1747-
1756 (1999); Shu, H., et al., J. Leuko. Biol., 65:680-683 (1999); Mukhopadhyay, A., et
al., J. Biol. Chem., 274:15978-15981 (1999); Mackay, F. et al.. J. Exp. Med., 190:1697-
1710 (1999); Gross, J.A., et al.. Nature, 404:995-999 (2000); and Example 2).
Preferably, the ability of an antibody to neutralize or antagonize TNFSF13b activity is
assessed by inhibition of B cell proliferation as shown in Example 2.
The term "Koff", as used herein, is intended to refer to the off rate constant for
dissociation of an antibody from the antibody/antigen complex.
The term "Kd", as used herein, is intended to refer to the dissociation constant or
the "off" rate divided by the "on" rate, of a particular antibody-antigen interaction. For
purposes of the present invention KD was determined as shown in Example 4
An "isolated" antibody is one that has been identified and separated and/or
recovered from a component of its natural environment. Contaminant components of its
natural environment are materials that would interfere with diagnostic or therapeutic uses
for the antibody, and may include enzymes, hormones, and other proteinaceous or non-
proteinaceous solutes. Ordinarily, an isolated antibody is prepared by at least one
purification step. In preferred embodiments, the antibody will be purified (1) to greater
than 95% by weight of antibody as determined by the Lowry method, and most preferably
more than 99% by weight, and (2) to homogeneity by SDS-PAGE under reducing or
nonreducing conditions using Coomassie blue, or preferably, silver stain. Preferably, an
"isolated antibody" is an antibody that is substantially free of other antibodies having
different antigenic specificities (e.g., an isolated antibody that specifically binds
hTNFSF13b substantially free of antibodies that specifically bind antigens other than
hTNFSF13b polypeptide).
The phrase "nucleic acid molecule" includes DNA molecules and RNA molecules.
A nucleic acid molecule may be single-stranded or double-stranded, but preferably is
double-stranded DNA.
The phrase "isolated nucleic acid molecule", as used herein in reference to nucleic
acids encoding antibodies or antibody fragments (e.g., HCVR, LCVR, CDR3) that bind
hTNFSF13b polypeptide, includes a nucleic acid molecule in which the nuclcotide
sequences encoding the antibody, or antibody portion, are free of other nucleotide
sequences encoding antibodies or antibody fragments that bind antigens other than
hTNFSF13b polypeptide, which other sequences may naturally flank the nucleic acid in
human genomic DNA. Thus, for example, an isolated nucleic acid of the invention
encoding a HCVR region of an anti-hTNFSF13b human antibody contains no other
sequences encoding HCVR regions that bind antigens other than hTNFSF13b
polypeptide.
The term "vector" includes a nucleic acid molecule capable of transporting
another nucleic acid to which it has been linked. One type of vector is a "plasmid", which
refers to a circular double stranded DNA loop into which additional DNA segments may
be ligated. Another type of vector is a viral vector, wherein additional DNA segments
may be ligated into the viral genome. Certain vectors are capable of autonomous
replication in a host cell into which they are introduced (e.g., bacterial vectors having a
bacterial origin of replication and episomal mammalian vectors). Other vectors (e.g.,
non-episomal mammalian vectors) can be integrated into the genome of a host cell upon
introduction into the host cell, and thereby are replicated along with the host genome.
Moreover, certain vectors are capable of directing the expression of genes to which they
are operatively linked. Such vectors are referred to herein as "recombinant expression
vectors" (or simply, "expression vectors"). In general, expression vectors of utility in
recombinant DNA techniques are often in the form of plasmids. In the present
specification, "plasmid" and "vector" may be used interchangeably as the plasmid is the
most commonly used form of vector. However, the invention is intended to include such
other forms of expression vectors, such as vital vectors (e.g., replication defective
retroviruscs, adenoviruses, and adeno-associated viruses), that serve equivalent functions.
Nucleic acid is "operably linked" when it is placed into a functional relationship
with another nucleic acid sequence. For example, DNA for a presequence or secretory
leader is operably Iinked to DNA for a polypeptide if it is expressed as a preprotein that
participates in the secretion of the polypeptide; a promoter or enhancer is operably linked
to a coding sequence if it affects the transcription of the sequence; or a ribosome binding
site is operably linked to a coding sequence if it is positioned so as to facilitate translation.
Generally, "Operably indeed" means that the DNA sequences being linked are contiguous,
and, in the case of a secretory leader, contiguous and in reading frame. However,
enhancers do not have to be contiguous. Linking is accomplished by ligation at
convenient restriction sites. If such sites do not exist, the synthetic oligonucleotide
adaptors or linkers are used in accordance with conventional practice.
The term "recombinant" in reference to an antibody includes antibodies that are
prepared, expressed, created or isolated by recombinant means. Representative examples
include antibodies expressed using a recombinant expression vector transfected into a
host cell, antibodies isolated from a recombinant, combinatorial human antibody library,
antibodies isolated from an animal (e.g., a mouse) that is transgenic for human
immunoglobulin genes antibodies prepared, expressed, created or isolated by any
means that involves splicing of human immunoglobulin gene sequences to other DNA
sequences. Such recombinant human antibodies have variable and constant regions
derived from human germline immunosequences.
The phrase "recombinant host cell" (or simply "host cell") includes a cell into
which a recombinant expression vector has been introduced. It should be understood that
such terms are intended to refer not only to the particular subject cell but to the progeny of
such a cell. Because certain modifications may occur in succeeding generations due to
either mutation or environmental influences, such progeny may not, in fact, be identical to
the parent cell, but are stall included within the scope of the term "host cell" as used
herein.
Recombinant human antibodies may also be subjected to in vitro mutagenesis (or,
when as animal transgenic for human Ig sequence is used, in vivo somatic mutagenesis)
and, thus, the amino acid sequences of the HCVR and LCVR regions of the recombinant
antibodies are sequences that, while derived from those related to human germline HCVR
and LCVR sequences, may not naturally exist within the human antibody germline
repertoire in vivo.
Transgenic animals (e.g., mice) that are capable, upon immunization, of producing
a full repertoire of human antibodies in the absence of endogenous immunoglobulin
production can be employed. Transfer of the human germ-line immunoglobulin gene
array in such germ-line mutant mice will result in the production of human antibodies
upon antigen challenge (see, e.g., Jakobovits, et al., Proc. Natl. Acad. Sci. USA, 90:2551-
2555, (1993); Jakobovits, et al., Nature, 362:255-258, (1993; Bruggemann, et al.. Year in
Immun., 7:33 (1993); Nature 148:1547-1553 (1994), Nature Biotechnology 14:826
(1996); Gross, J.A., et al.. Nature, 404:995-999 (2000); and U.S. patents nos. 5,877,397,
5,874,299, 5,814,318, 5,789,650, 5,770,429, 5,661,016, 5,633,425, 5,625,126, 5,569,825,
and 5,545,806 (each of which is incorporated herein by reference in its entirety for all
purposes)). Human antibodies can also be produced in phage display libraries
(Hoogenboom and Winter, J. Mol. Biol., 227:381 (1992); Marks, et al., J. Mol. Biol.,
222:581 (1991)). The techniques of Cole et al. and Boerner, et al. are also available for
the preparation of human monoclonal antibodies (Cole, et al.. Monoclonal Antibodies and
Cancer Therap, Alan R. Liss, p. 77 (1985) and Boerner, et al., J. Immunol., 147(l):86-95
(1991)).
"Container" means any receptacle and closure suitable for storing, shipping,
dispensing, and/or handling a pharmaceutical product.
"Packaging material" means a customer-friendly device allowing convenient
administration and/or ancillary devices that aid in delivery, education, and/or
administration. The packaging material may improve antibody administration to the
patient, reduce or improve educational instruction time for the patient, provide a platform
for improved health economic studies, and/or limit distribution channel workload. Also,
the packaging material may include but not be limited to a paper-based package, shrink
wrapped package, see-through top packaging, trial-use coupons, educational materials,
ancillary supplies, and/or delivery device.
"Package insert" means information accompanying the product that provides a
description of how to administer the product, along with the safety and efficacy data
required to allow the physician, pharmacist, and patient to make an informed decision
regarding use of the product, and/or patient education information. The package insert
generally is regarded as the "label" for a pharmaceutical product.
A "subject" means a mamma]; preferably a human in need of a treatment. In
regards to the present invention subjects in need of treatment include mammals that are
suffering from, or are prone to suffer from a disorder in which TNFSF13b activity is
detrimental, for example immune diseases, including autoimmune diseases, and
inflammatory diseases. Preferred disorders include, but are not limited to, systemic lupus
erythematosus, rheumatoid arthritis, juvenile chronic arthritis, Lyme arthritis, Crohn's
disease, ulcerative colitis, inflammatory bowel disease, asthma, allergic diseases,
psoriasis, graft versus host disease, organ transplant rejection, acute or chronic immune
disease associated with organ transplantation, sarcoidosis, infectious diseases, parasitic
diseases, female infertility, autoimmune thrombocytopenia, autoimmune thyroid disease,
Hashimoto's disease, Sjogren's syndrome, and cancers, particularly B or T cell
lymphomas or myelomas.
Various aspects of the invention are described in further detail in the following
subsections.
The present invention relates to human monoclonal antibodies that are specific for
and neutralize bioactive hTNFSF13b polypeptides. Also disclosed are antibody heavy
and light chain amino acid sequences which are highly specific for and neutralize
TNFSF13b polypeptides when they are bound to them. This high specificity enables the
anti-hTNFSF13b human antibodies, and human monoclonal antibodies with like
specificity, to be immunotherapy of TNFSF13b associated diseases.
In one aspect, the invention provides an isolated human antibody comprising at
least one of the amino acid sequences shown in SEQ ID NOS: 2, 4, 6, 8, 10, 12, 14, or 16
and that binds a TNFSF13b polypeptide epitope with high affinity, dissociates from a
bound TNFSF13b polypeptide with a low Koff rate constant of 1 x 10-4 s-1 or less, and
has the capacity to antagonize TNFSF13b polypeptide activity. In one embodiment, the
anti-hTNFSF13b human antibody comprises a polypeptide selected from the group
consisting of: CDR1 polypeptide of the LCVR as shown in SEQ ID NO: 4; CDR2
polypeptide of the LCVR as shown in SEQ ID NO: 6; CDR3 polypeptide of the LCVR as
shown in SEQ ID NO: 8; CDR1 polypeptide of the HCVR as shown in SEQ ID NO: 12;
CDR2 polypeptide of the HCVR as shown in SEQ ID NO: 14; and CDR3 polypeptide of
the HCVR as shown in SEQ ID NO: 16. In another embodiment, the anti-hTNFSF13b
human antibody comprises at least two of the polypeptides selected from the group
consisting of: CDR1 polypeptide of the LCVR as shown in SEQ ID NO: 4; CDR2
polypeptide of the LCVR as shown in SEQ ID NO: 6; CDR3 polypeptide of the LCVR as
shown in SEQ ID NO: 8;CDR1 polypeptide of the HCVR as shown in SEQ ID NO: 12;
CDR2 polypeptide of the HCVR as shown in SEQ ID NO: 14; and CDR3 polypeptide of
the HCVR as shown in SEQ ID NO: 16. In another embodiment, the anti-hTNFSF13b
human antibody comprises at least three of the polypeptides selected from the group
consisting of: CDR1 polypeptide of the LCVR as shown in SEQ ID NO: 4; CDR2
polypeptide of the LCVR as shown in SEQ ID NO: 6; CDR3 polypeptide of the LCVR as
shown in SEQ ID NO: 8; CDR1 polypeptide of the HCVR as shown in SEQ ID NO: 12;
CDR2 polypeptide of the HCVR as shown in SEQ ID NO: 14; and CDR3 polypeptide of
the HCVR as shown in SEQ ID NO: 16. In another embodiment, the anti-hTNFSFl 3b
human antibody comprises at least four of the polypeptides selected from the group
consisting of: CDR1 polypeptide of the LCVR as shown in SEQ ID NO: 4; CDR2
polypeptide of the LCVR as shown in SEQ ID NO: 6; CDR3 polypeptide of the LCVR as
shown in SEQ ID NO: 8; CDRI polypeptide of the HCVR as shown in SEQ ID NO: 12;
CDR2 polypeptide of the HCVR as shown in SEQ ID NO: 14; and CDR3 polypeptide of
the HCVR as shown in SEQ ID NO: 16. In another embodiment, the anti-hTNFSFl 3b
human antibody comprises at least five of the polypeptides selected from the group
consisting of: CDRI polypeptide of the LCVR as shown in SEQ ID NO: 4; CDR2
polypeptide of the LCVR as shown in SEQ ID NO: 6; CDR3 polypeptide of the LCVR as
shown in SEQ ID NO: 8; CDRI polypeptide of the HCVR as shown in SEQ ID NO: 12;
CDR2 polypeptide of the HCVR as shown in SEQ ID NO: 14; and CDR3 polypeptide of
the HCVR as shown in SEQ ID NO: 16. In another embodiment, the anti-hTNFSF13b
human antibody comprises the polypeptides of CDRI polypeptide of the LCVR as shown
in SEQ ID NO: 4; CDR2 polypeptide of the LCVR as shown in SEQ ID NO: 6; CDR3
polypeptide of the LCVR as shown in SEQ ID NO: 8; CDRI polypeptide of the HCVR as
shown in SEQ ID NO: 12; CDR2 polypeptide of the HCVR as shown in SEQ ID NO: 14;
and CDR3 polypeptide of the HCVR as shown in SEQ ID NO: 16.
More preferred, the anti-hTNFSF13b human antibody comprises a light chain
variable region (LCVR) polypeptide as shown in SEQ ID NO: 2 or a heavy chain variable
region (HCVR) polypeptide as shown in SEQ ID NO: 10. Even more preferred, the anti-
hTNFSF13b human antibody comprises the LCVR polypeptide as shown in SEQ ID NO:
2 and the HCVR polypeptide as shown in SEQ ID NO: 10.
In preferred embodiments, the isolated human antibody dissociates from a bound
TNFSF13b polypeptide with a Koff rate constant of 5 x 10-5 s-1 or less, and inhibits
TNFSF13b induced proliferation in an in vitro neutralization assay with an IC50 of 1 x
10-7 M or less. In more preferred embodiments, the isolated human antibody dissociates
from a bound TNFSF13b polypeptide epitope with a Koff rate constant of 1 x 10-5 s-1 or
less and inhibits TNFSF13b induced proliferation in an in vitro neutralization assay with
an IC50 of 1 x 10-8 M or less. In an even more preferred embodiment, the isolated anti-
TNFSF13b human antibody dissociates from a bound hTNFSF13b polypeptide with a
Koff rate constant of 5 x 10-6 s-1 or less and inhibits TNFSF13b induced proliferation in
an in vitro assay with an IC50 of 1 x 10-9 M or less. Examples of anti-hTNFSF13b
human antibodies that meet, the aforementioned kinetic and neutralization criteria include
4A5-3.1.1-B4 antibodies.
The most preferred anti-hTNFSF 13b human antibody of the present invention is
referred to herein as 4A5-3.1.1-B4. 4A5-3.1.1-B4 has LCVR and HCVR polypeptide
sequences as shown in SEQ ID NO:2 and SEQ ID NO: 10, respectively. The poly-
nucleotide sequence encoding the LCVR and HCVR of 4A5-3.1.1-B4 is shown in SEQ
ID NO: I and SEQ ID NO:9, respectively. The properties of the anti-hTNFSF 13b human
antibodies of the present invention are specifically disclosed in the Examples.
Particularly notable is the high affinity for TNFSF13b polypeptide, slow dissociation
kinetics, and high capacity to antagonize TNFSF13b polypeptide activity demonstrated by
4A5-3.1.1-B4.
The Koff of an anti-hTNFSF 13b human antibody can be determined by surface
plasmon resonance as generally described in Example 4. Generally, surface plasmon
resonance analysis measures real-time binding interactions between ligand (recombinant
TNFSF13b polypeptide immobilized on a biosensor matrix) and analyte (antibodies in
solution) by surface plasmon resonance (SPR) using the BIAcore system (Pharmacia
Biosensor, Piscataway, NJ). SPR analysis can also be performed by immobilizing the
analyte (antibodies on a biosensor matrix) and presenting the ligand (recombinant
TNFSF13b in solution).
In one aspect, the present invention is also directed to the cell lines which produce
the anti-hTNFSF13b human antibodies of the present invention. The isolation of cell
lines producing monoclonal antibodies of the invention can be accomplished using
routine screening techniques known in the art. A hybridoma which produces an anti-
hTNFSF13b human antibody of the present invention has been deposited with ATCC,
(ATCC PTA-3674) as disclosed herein.
A wide variety of host expression systems can be used to express the antibodies of
the present invention including bacterial, yeast, baculoviral, plant, and mammalian
expression systems (as well as phage display expression systems). An example of a
suitable bacterial expression vector is pUC119 (Sfi). Other antibody expression systems
are also known in the art and are contemplated herein.
An antibody of the invention can be prepared by recombinant expression of
immunoglobulin light and heavy chain genes in a host cell. To express an antibody
recombinantly, a host cell is transfected with one or more recombinant expression vectors
carrying DNA fragments encoding the immunoglobulin light and heavy chains of the
antibody such that the light and heavy chains are expressed in the host cell. Preferably,
the recombinant antibodies are secreted into the medium in which the host cells are
cultured, from which medium the antibodies can be recovered. Standard recombinant
DNA methodologies are used to obtain antibody heavy and light chain genes, incorporate
these genes into recombinant expression vectors, and introduce the vectors into host cells.
The isolated DNA encoding the HCVR region can be converted to a full-length
heavy chain gene by operatively linking the HCVR-encoding DNA to another DNA
molecule encoding heavy chain constant regions (CH1, CH2, and CH3). The DNA
sequences of human heavy chain constant region genes are known in the art and DNA
fragments encompassing these regions can be obtained by standard PCR amplification.
The heavy chain constant region can be an IgG1, IgG2, IgG3, lgG4, IgA, lgE, IgM or IgD
constant region and any allotypic variant therein as described in Kabat, (Kabat, el al.
Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Department of
Health and Human Services, N1H Publication No. 91-3242 (1991)), but most preferably is
an IgG1, or IgG4 constant region. Alternatively, the antibody portion can be an Fab
fragment, a Fab' fragment, F(ab')2, or a single chain FV fragment. For a Fab fragment
heavy chain gene, the HCVR-encoding DNA can be operatively linked to another DNA
molecule encoding only the heavy chain CH1 constant region.
The isolated DNA encoding the LCVR region can be converted to a full-length
light chain gene (as well as a Fab light chain gene) by operatively linking the LCVR-
encoding DNA to another DNA molecule encoding the light chain constant region, CL.
The DNA sequences of human light chain constant region genes are known in the art and
DNA fragments encompassing these regions can be obtained by standard PCR
amplification. The light chain constant region can be a kappa or lambda constant region.
To create a scFV gene, the HCVR- and LCVR-encoding DNA fragments are
operatively linked to another fragment encoding a flexible linker, e.g., encoding the amino
acid sequence Gly-Gly-Gly-Gly-Ser- Gly-Gly-Gly-Gly-Ser-Gly-Gly-Gly-Gly-Ser (Gly4-
Ser)3, such that the HCVR and LCVR sequences can be expressed as a contiguous single-
chain protein, with the LCVR and HCVR regions joined by the flexible linker (see e.g.,
Bird et al. Science 242:423-426 (1988); Huston, et al., Proc. Natl. Acad Sci. USA
85:5879-5883 (1988); McCafferty, et al., Nature 348:552-554 (1990)).
To express the antibodies of the invention, DNAs encoding partial or full-length
light and heavy chains, obtained as described above, are inserted into expression vectors
such that the genes are operatively linked to transcriptional and translational control
sequences. The antibody gene is ligated into a vector such that transcriptional and
translational control sequences within the vector serve their intended function of
regulating the transcription and translation of the antibody gene. The expression vector
and expression control sequences are chosen to be compatible with the expression host
cell used. The antibody light chain gene and the antibody heavy chain gene can be
inserted into separate vector or, more typically, both genes are inserted into the same
expression vector. The antibody genes are inserted into the expression vector by standard
methods (e.g., ligation of complementary restriction sites on the antibody gene fragment
and vector, or blunt end ligation if no restriction sites are present). Additionally, or
alternatively, the recombinant expression vector can encode a signal peptide that
facilitates secretion of the anti-hTNFSF13b human antibody chain from a host cell. The
anti-hTNFSF13b human antibody chain gene can be cloned into the vector such that the
signal peptide is linked in-frame to the amino terminus of the antibody chain gene. The
signal peptide can be an immunoglobulin signal peptide or a heterologous signal peptide
(i.e., a signal peptide from a non-immunoglobulin protein).
In addition to the antibody chain genes, the recombinant expression vectors of the
invention carry regulatory sequences that control the expression of the antibody chain
genes in a host cell. Regulatory sequences comprise promoters, enhancers and other
expression control elements (e.g., polyadenylation signals) that control the transcription or
translation of the antibody chain genes. It will be appreciated by those skilled in the art
that the design of the expression vector, including the selection of regulatory sequences
may depend on such factors as the choice of the host cell to be transformed, the level of
expression of protein desired, etc. Preferred regulatory sequences for mammalian host
cell expression include viral elements that direct high levels of protein expression in
mammalian cells, such as promoters and/or enhancers derived from cytomegalovirus
(CMV) (such as the CMV promoter/enhancer), Simian Virus 40 (SV40) (such as the
SV40 promoter/enhancer), adenovirus, (e.g., the adenovirus major late promoter
(AdMLP)) and polyoma.
In addition to the antibody chain genes and regulatory sequences, the recombinant
expression vectors of the invention may carry additional sequences, such as sequences
that regulate replication of the vector in host cells (e.g., origins of replication) and
selectable marker genes. The selectable marker gene facilitates selection of host cells into
which the vector has been introduced. For example, typically the selectable marker gene
confers resistance to drugs, such as G418, hygromycin, or methotrexatc, on a host cell
into which the vector has been introduced. Preferred selectable marker genes include the
dihydrofolate reductase (DHFR) gene (for use in dhfr-host cells with methotrexate
selection/amplification) and the neo gene (for G4I8 selection).
For expression of the light and heavy chains, the expression vectors) encoding the
heavy and light chains is transfected into a host cell by standard techniques. The various
forms of the term "transfection" are intended to encompass a wide variety of techniques
commonly used for the introduction of exogenous DNA into a prokaryotic or eukaryotic
host cell, e.g., electroporation, calcium-phosphate precipitation, DEAE-dextran
transfection and the like. Although it is theoretically possible to express the antibodies of
the invention in either prokaryotic or eukaryotic host cells, expression of antibodies in
eukaryotic cells, and most preferably mammalian host cells, is the most preferred because
such eukaryotic cells, and in particular mammalian cells, are more likely than prokaryotic
cells to assemble and secrete a properly folded and immunologically active antibody.
Preferred mammalian host cells for expressing the recombinant antibodies of the
invention include Chinese Hamster Ovary (CHO cells) (including dhfr-CHO cells,
described in Urlaub and Chasin, Proc. Natl. Acad. Sci. USA, 77:4216-4220 (1980), used
with a DHFR selectable marker, e.g., as described in R.J. Kaufman and P.A. Sharp, Mol.
Biol., 159:601-621 (1982)), NSO myeloma cells, COS cells and SP2 cells. When
recombinant expression vectors encoding antibody genes are introduced into mammalian
host cells, the antibodies are produced by culturing the host cells for a period of time
sufficient to allow for expression of the antibody in the host cells or, more preferably,
secretion of the antibody into the culture medium in which the host cells are grown.
Antibodies can be recovered from the culture medium using standard protein purification
methods.
Host cells can also be used to produce portions of intact antibodies, such as Fab
fragments of scFV molecules. It will be understood that variations on the above
procedure are within the scope of the present invention. For example, it may be desirable
to transfect a host cell with DNA encoding either the light chain or the heavy chain (but
not both) of an antibody of this invention. Recombinant DNA technology may also be
used to remove some or all of the DNA encoding either or both of the light and heavy
chains that is not necessary for binding to hTNFSF13b. The molecules expressed from
such truncated DNA molecules are also encompassed by the antibodies of the invention.
In a one system for recombinant expression of an antibody of the invention, a recombinant
expression vector encoding both the antibody heavy chain and the antibody light chain is
introduced into dhfr-CHO cells by calcium phosphate-mediated transfection. Within the
recombinant expression vector, the antibody heavy and light chain genes are each
operatively linked to enhancer/promoter regulatory elements (e.g., derived from SV40,
CMV, adenovirus and the like, such as a CMV enhancer/AdMLP promoter regulatory
element or an SV40 enhancer/AdMLP promoter regulatory element) to drive high levels
of transcription of the genes. The recombinant expression vector also carries a DHFR
gene, which allows for selection of CHO cells that have been transfected with the vector
using methotrexate selection/amplification. The selected transformant host cells are
culture to allow for expression of the antibody heavy and light chains and intact antibody
is recovered from the culture medium. Standard molecular biology techniques are used to
prepare the recombinant expression vector, transfect the host cells, select for
transformants, culture the host cells and recover the antibody from the culture medium.
Antibodies or antigen-binding portions thereof of the invention can be expressed in an
animal (e.g., a mouse) that is transgenic for human immunoglobulin genes (see e.g.,
Taylor, L.D., et al. Nucl. Acids Res., 20:6287-6295(1992)). Plant cells can also be
modified to create transgenic plants that express the antibody or antigen binding portion
thereof, of the invention.
In view of the foregoing, another aspect of the invention pertains to nucleic acids,
vectors, and host cell compositions that can be used for recombinant expression of the
antibodies and antibody portions of the invention. Preferably, the invention features
isolated nucleic acids that encode CDRs of 4A5-3.1.1-B4, or the full heavy and/or light
chain variable region of 4A5-3.1.1-B4. Accordingly, in one embodiment, the invention
features an isolated nucleic acid encoding an antibody heavy chain variable region that
encodes the 4A5-3.1.1-B4 heavy chain CDR3 comprising the amino acid sequence of
SEQ ID NO: 16. Preferably, the nucleic acid encoding the antibody heavy chain variable
region further encodes a 4A5-3.1.1-B4 heavy chain CDR2 which comprises the amino
acid sequence of SEQ ID NO: 14. More preferably, the nucleic acid encoding the antibody
heavy chain variable region further encodes a 4A5-3.1.1-B4 heavy chain CDR1 which
comprises the amino acid sequence of SEQ ID NO: 12. Even more preferably, the isolated
nucleic acid encodes an antibody heavy chain variable region comprising the amino acid
sequence of SEQ ID NO: 10 (the full HCVR region of 4A5-3.1.1-B4).
In other embodiments, the invention features an isolated nucleic acid encoding an
antibody light chain variable region that encodes the 4A5-3.1.1-B4 light chain CDR3
comprising the amino acid sequence of SEQ ID NO:8 Preferably, the nucleic acid
encoding the antibody light chain variable region further encodes a 4A5-3.1.1-B4 light
chain CDR1 which comprises the amino acid sequence of SEQ ID NO:4. Even more
preferably, the isolated nucleic acid encodes an antibody light chain variable region
comprising the amino acid sequence of SEQ ID NO:2 (the full LCVR region of 4A5-
3.1.1-B4).
In other embodiments, the invention features an isolated nucleic acid encoding an
antibody light chain variable region that encodes the 4A5-3.1.1-B4 light chain CDR3
comprising the amino acid sequence of SEQ ID NO:8 Preferably, the nucleic acid
encoding the antibody light chain variable region further encodes a 4A5-3.1.1-B4 light
chain CDR1 which comprises the amino acid sequence of SEQ ID NO:4. Even more
preferably, the isolated nucleic acid encodes an antibody light chain variable region
comprising the amino acid sequence of SEQ ID NO:2 (the full LCVR region of 4A5-
3.1.1-B4).
In another embodiment, the invention provides an isolated nucleic acid encoding a
heavy chain CDR3 domain comprising the amino acid sequence of SEQ ID NO: 16 (i.e.,
the 4A5-3.1.1-B4 HCVR CDR3). This nucleic acid can encode only the CDR3 region or,
more preferably, encodes an entire antibody heavy chain variable region (HCVR). For
example, the nucleic acid can encode a HCVR having a CDR2 domain comprising the
amino acid sequence of SEQ ID NO: 14 (i.e., the 4A5-3.1.1-B4 HCVR CDR2) and a
CDR1 domain comprising the amino acid sequence of SED ID NO: 12 (i.e., 4A5-3.1.1-B4
HCVR CDR1).
In still another embodiment, the invention provides an isolated nucleic acid
encoding an antibody light chain variable region comprising the amino acid sequence of
SEQ ID NO:2 (i.e., the 4A5-3.1.1-B4 LCVR). Preferably this nucleic acid comprises the
nucleotide sequence of SEQ ID NO: 1, although the skilled artisan will appreciate that due
to the degeneracy of the genetic code, other nucleotide sequences can encode the amino
acid sequence of SEQ ID NO:2. The nucleic acid can encode only the LCVR or can also
encode an antibody light chain constant region, operatively linked to the LCVR. In one
embodiment, this nucleic acid is in a recombinant expression vector.
In still another embodiment, the invention provides an isolated nucleic acid
encoding an antibody heavy chain variable region comprising the amino acid sequence of
SEQ ID NO:10 (i.e., the 4A5-3.1.1-B4 HCVR). Preferably this nucleic acid comprises
the nucleotide sequence of SEQ ID NO:9, although the skilled artisan will appreciate that
due to the degeneracy of the genetic code, other nucleotide sequences can encode the
amino acid sequence of SEQ ID NO:10. The nucleic acid can encode only the HCVR or
can also encode a heavy chain constant region, operatively linked to the HCVR. For
example, the nucleic acid can comprise an IgG1 or IgG4 constant region. In one
embodiment, this nucleic acid is in a recombinant expression vector.
Those of ordinary skill in the art are aware that modifications in the amino acid
sequence of the antibody can result in an antibody that display equivalent or superior
functional characteristics when compared to the original antibody. Alterations in the
antibodies of the present invention can include one or more amino acid insertions,
deletions, substitutions, truncations, fusions, and the like, either from natural mutations or
human manipulation. The present invention encompasses antibodies disclosed herein
further comprising one or more amino acid substitutions provided that the substituted
antibodies have substantially the same (or improved or reduced, as may be desirable)
activity(ies) as the antibodies disclosed herein. Preferably, a CDR of the present invention
has 3 or less conservative substitutions. Preferably, a CDR of the present invention has 2
or less conservative substitutions. Preferably, a CDR of the present invention has one
conservative substitution. The skilled artisan will recognize that antibodies having
conservative amino acid substitutions can be prepared by a variety of techniques known in
the art. For example, a number of mutagenesis methods can be used, including PCR
assembly, Kunkel (dut-ung-) and thiophosphate (Amersham Sculptor kit) oligonucleotide-
directed mutagenesis. Conservative substitutions of interest are shown in Table 1 along
with preferred substitutions.
Table 1. Conservative Substitutions
The invention also provides recombinant expression vectors encoding an antibody
comprising a polypeptide selected from the group consisting of a polypeptide as shown in
SEQ ID NO: 2, a polypeptide as shown in SEQ ID NO: 4, a polypeptide as shown in SEQ
ID NO: 6, a polypeptide as shown in SEQ ID NO: 8, a polypeptide as shown in SEQ ID
NO: 10, a polypeptide as shown in SEQ ID NO: 12, a polypeptide as shown in SEQ ID
NO: 14; and a polypeptide as shown in SEQ ID NO: 16.
The invention also provides recombinant expression vectors encoding both an
antibody heavy chain and an antibody light chain. For example, in one embodiment, the
invention provides a recombinant expression vector encoding:
a) an antibody heavy chain having a variable region comprising the amino acid
sequence of SEQ ID NO: 10; and
b) an antibody light chain having a variable region comprising the amino acid
sequence of SEQ ID NO:2.
Once expressed, the whole antibodies, their dimers, individual light and heavy
chains, or other immunoglobulin forms of the present invention can be purified accoiding
to standard procedures of the art, including ammonium sulfate precipitation, ion
exchange, affinity, reverse phase, hydrophobic interaction column chromatography, gel
electro-phoresis and the like. Substantially pure immunoglobulins of at least about 90 to
95% homogeneity are preferred, and 98 to 99% or more homogeneity most preferred, for
pharmaceutical uses. Once purified, partially or to homogeneity as desired, the
polypeptides may then be used therapeutically or prophylactically, as directed herein.
The antibodies of the present invention can be incorporated into pharmaceutical
compositions suitable for administration to a subject. Typically, the pharmaceutical
composition comprises an antibody or antibody portion of the invention and a
pharmaceutically acceptable diluent, carrier, and/or excipient. The pharmaceutical
compositions for administration are designed to be appropriate for the selected mode of
administration, and pharmaceutically acceptable diluents, carrier, and/or excipients such
as dispersing agents, buffers, surfactants, preservatives, solubilizing agents, isotonicity
agents, stabilizing agents and the like are used as appropriate.
A pharmaceutical composition comprising an anti-hTNFSF13b human antibody of
the present invention can be administered to a mammal at risk for or exhibiting
autoimmunity related symptoms or pathology such as systemic lupus erythematosus using
standard administration techniques by intravenous, intraperitoneal, subcutaneous,
pulmonary, transdermal, intramuscular, intranasal, buccal, sublingual, or suppository
administration.
The antibodies of the invention can be incorporated into a pharmaceutical
composition suitable for parenteral administration. Peripheral systemic delivery by
intravenous or intraperitoneal or subcutaneous injection is preferred. Suitable vehicles for
such injections are straightforward. In addition, however, administration may also be
effected through the mucosal membranes by means of nasal aerosols or suppositories.
Suitable formulations for such modes of administration are well known and typically
include surfactants that facilitate cross-membrane transfer.
The pharmaceutical compositions typically must be sterile and stable under the
conditions of manufacture and storage. Therefore, pharmaceutical compositions may be
sterile filtered after making the formulation, or otherwise made microbiologically
acceptable. A typical composition for intravenous infusion could have a volume as much
as 250 mL of fluid, such as sterile Ringer's solution, and 1-100 mg per mL, or more in
antibody concentration. Therapeutic agents of the invention can all be frozen or
lyophilized for storage and reconstituted in a suitable sterile carrier prior to use.
Lyophilization and reconstitution can lead to varying degrees of antibody activity loss
(e.g. with conventional immune globulins, IgM antibodies tend to have greater activity
loss than igG antibodies). Dosages may have to be adjusted to compensate. The pH of
the formulation will be selected to balance antibody stability (chemical and physical) and
comfort to the patient when administered. Generally, pH between 6 and 8 is tolerated.
TNFSF13b plays a critical role in the pathology associated with a variety of
diseases involving immune and inflammatory factors. Therefore, a pharmaceutical
composition comprising an anti-hTNFSF13b human antibody of the invention can be used
to treat disorders in which TNFSF13b activity is detrimental, for example immune
diseases including autoimmune diseseases and inflammatory diseases. Preferred disorders
include, but are not limited to, systemic lupus erythematosus, rheumatoid arthritis,
juvenile chronic arthritis, Lyme arthritis, Crohn's disease, ulcerative colitis, inflammatory
bowel disease, asthma, allergic diseases, psoriasis, graft versus host disease, organ
transplant rejection, acute or chronic immune disease associated with organ
transplantation, sarcoidosis, infectious diseases, parasitic diseases, female infertility,
autoimmune thrombocytopenia, autoimmune thyroid disease, Hashimoto's disease,
Sjogren's syndrome, and cancers, particularly B or T cell lymphomas or myelomas.
More preferably, a pharmaceutical composition comprising an anti-hTNFSF 13b
human antibody and/or antibody fragment of the invention is used to treat systemic lupus
erythematosus.
The use of the antibody of an anti-hTNFSF 13b human antibody of the present
invention in the manufacture of a medicament for the treatment of at least one of the
aforementioned disorders in which TNFSF13b activity is detrimental is also contemplated
herein.
In certain situations, an antibody of the invention will be co-formulated with
and/or co-adminstered with one or more additional therapeutic agents that are used in the
treatment of autoimmune and/or inflammatory diseases. Such combination therapies may
advantageously utilize lower dosages of the administered therapeutic agents, thus
avoiding possible toxicities or complications associated with the various monotherapies.
It will be appreciated by the skilled practitioner that when the antibodies of the invention
are used as part of a combination therapy, a lower dosage of antibody may be desirable
than when the antibody alone is administered to a subject (e.g., a synergistic therapeutic
effect may be achieved through the use of combination therapy which, in turn, permits use
of a lower dose of the antibody to achieve the desired therapeutic effect).
The pharmaceutical compositions of the invention may include a "therapeutically
effective amount" or a "prophylactically effective amount" of an antibody of the
invention. A "therapeutically effective amount" refers to an amount effective, at dosages
and for periods of time necessary, to achieve the desired therapeutic result. A
therapeutically effective amount of the antibody may vary according to factors such as the
disease state, age, sex, and weight of the individual, and the ability of the antibody or
antibody portion to elicit a desired response in the individual. A therapeutically effective
amount is also one in which any toxic or detrimental effects of the antibody or antibody
portion are outweighed by the therapeutically beneficial effects. A "prophylactically
effective amount" refers to an amount effective, at dosages and for periods of time
necessary, to achieve the desired prophylactic result. Typically, since a prophylactic dose
is used in subjects prior to or at an earlier stage of disease, the prophylactically effective
amount will be less than the therapeutically effective amount.
Dosage regimens may be adjusted to provide the optimum desired response (e.g., a
therapeutic or prophylactic response). For example, a single bolus may be administered,
several divided doses may be administered over time or the dose may be proportionally
reduced or increased as indicated by the exigencies of the therapeutic situation.
Given their ability to bind to hTNFSFl 3b, antibodies, of the invention can be used
to detect TNFSF13b polypeptides (e.g, in a biological sample, such as serum or plasma),
using a conventional immunoassay, such as an enzyme linked immunosorbent assays
(EL1SA), an radioimmunoassay (RIA) or tissue immunohistochemistry. The invention
provides a method for detecting TNFSF13b in a biological sample comprising contacting
a biological sample with an antibody, or antibody portion, of the invention and detecting
either the antibody (or antibody portion) bound to hTNFSF13b or unbound antibody (or
antibody portion), to thereby detect hTNFSFl 3b in the biological sample. The antibody is
directly or indirectly labeled with a detectable substance to facilitate detection of the
bound or unbound antibody. Suitable detectable substances include various enzymens,
prosthetic groups, fluorescent materials, luminescent materials and radioactive materials.
Examples of suitable enzymes include horseradish peroxidase, alkaline phosphatase, ß-
galactosidase, or acetylcholinesterase; examples of suitable prosthetic group complexes
include streptavidin/biotin and avidin/biotin; examples of suitable fluorescent materials
include umbelliferone, fluorescein, fluorescein isothiocyanatc, rhodamine,
dichlorotriazinyl-amine fluorescein, dansyl chloride or phycoerythrin; an example of a
luminescent material includes luminol; and examples of suitable radioactive material
include 1251, 131I, 35S, or 3H.
Alternative to labeling the antibody, TNFSF13b can be assayed in biological fluids
by a competition immunoassay utilizing TNFSF13b standards labeled with a detectable
substance and an unlabeled anti-hTNFSF13b human antibody. In this assay, the
biological sample, the labeled TNFSF13b standards and the anti-hTNFSF13b human
antibody are combined and the amount of labeled TNFSF13b standard bound to the
unlabeled antibody is determined. The amount of TNFSF13b in the biological sample is
inversely proportional to the amount of labeled rTNFSF13b standard bound to the anti-
hTNFSF13b human antibody.
In another embodiment, the present invention provides a use of an antibody that
neutralizes TNFSF13b activity by binding an epitope of TNFSF13b. The epitope was
identified as described in Example 10. For reference, the soluble portion of hTNFSF13b
is represented as follows:

The hTNFSF13b amino acids involved in binding the novel anti-hTNFSF13b
human antibodies comprise at least one of the amino acids selected from the group
consisting of: threonine at position 69, lysine at position 71, threonine at position 72,
tyrosine at position 73, glutamic acid at position 105, threonine at position 106, leucine at
position 107, and asparagine at position 109. In another embodiment, the amino acids
involved in binding the novel anti-hTNFSF13b human antibodies comprise at least two of
the amino acids selected from the group consisting of: threonine at position 69, lysine at
position 7K threonine at position 72, tyrosine at position 73, glutamic acid at position
105, threonine at position 106, leucine at position 107, and asparagine at position 109. In
another embodiment, the amino acids involved in binding the novel anti-hTNFSF13b
human antibodies comprise at least three of the amino acids selected from the group
consisting of: threonine at position 69, lysine at position 71, threonine at position 72,
tyrosine at position 73, glutamic acid at position 105, threonine at position 106, leucine at
position 107, and asparagine at position 109. In another embodiment, the amino acids
involved in binding the novel anti-hTNFSF13b human antibodies comprise at least four of
the amino acids selected from the group consisting of: threonine at position 69, lysine at
position 71, threonine at position 72, tyrosine at position 73, glutamic acid at position
105, threonine at position 106, leucine at position 107, and asparagine at position 109.
In another embodiment, the amino acids involved in binding the novel anti-
hTNFSF13b human antibodies comprise lysine at position 71, threonine at position 72,
tyrosine at position 73, and glutamic acid at position 105.
In another embodiment, the amino acids involved in binding the novel anti-
hTNFSFl 3b human antibodies comprise glutamic acid at position 105 and at least one of
the amino acids selected from the group consisting of: threonine at position 69, lysine at
position 71, threonine at position 72, and tyrosine at position 73. In another embodiment,
the amino acids involved in binding the novel anti-hTNFSF13b human antibodies
comprise threonine at position 106 and at least one of the amino acids selected from the
group consisting of: threonine at position 69, lysinc at position 71, threoninc at position
72, and tyrosine at position 73. In another embodiment, the amino acids involved in
binding the novel anti-hTNFSF13b human antibodies comprise leucine at position 107
and at least one of the amino acids selected from the group consisting of: threonine at
position 69, lysine at position 71, threonine at position 72, and tyrosine at position 73. In
another embodiment, the amino acids involved in binding the novel anti-hTNFSF13b
human antibodies comprise asparagine at position 109 and at least one of the amino acids
selected from the group consisting of: lysine at position 71, threonine at position 72, and
tyrosine at position 73.
In another embodiment, the amino acids involved in binding the novel anti-
hTNFSFI 3b human antibodies comprise lysine at position 71, threonine at position 72,
tyrosine at position 73, and glutamic acid at position 105.
The following examples are intended to illustrate but not to limit the invention.
Example 1: Generation of Anti-hTNFSF13b Human Monoclonal Antibodies
Monoclonal antibodies were generated using the HuMAb-Mouse™ technology at
Medarex by immunizing the mice with soluble hTNFSF13b (amino acids 133-285,
purchased from RDI, Flanders, NJ). Both the HCo7 and HCo12 mice were used. Mice
were immunized with 15 µg to 50 µg soluble hTNFSF13b in R1B1, Freund's complete
adjuvant or Freund's incomplete adjuvant. Eight mice producing serum antibody titers to
hTNFSFl 3b were injected i.v. with 10µg hTNFSF13b in PBS. The spleen was harvested
three days later from each mouse and fused with myeloma cells according to the method
described in Zola (Zola, H. Monoclonal antibodies: A Manual of Techniques. CRC Press,
Boca Raton, FL. (1987)).
Hybridomas were tested for binding to hTNFSF13b and to make sure they were
expressing human immunoglobulin heavy and light chains. Antibody binding to
hTNFSFl 3b was detected by ELISA as follows:
Plates were coated with 50 µl of 5µg/ml hTNFSF13b in PBS overnight at 4°C.
Plates were then emptied and blocked with 100 µl PBS + 0.05% Tween 20 (PBST) + 5%
chicken serum for 1 hour at room temperature. After washing three times with PBST, the
plates were drained and 100 µl diluted secondary reagents (HRP-HulgGFc, Jackson
cat# 109-036-098 or HRP-HuKappa, Bethyl cat#A80-l 15P; 1:5000 in blocking buffer)
was added per well. After an I hour incubation al room temperature plates were washed
three times as described above. Plates were developed using 10 ml citrate phosphate
buffer pH 4.0, 80 µl ABTS, 8 µl H2O2 per plate. After incubating 30 min. to 1 hour at
room temperature, absorbance of the plates was read A415-A490. Hybridomas that
showed binding to hTNFSF13b and that were huIgG heavy chain and human kappa light
chain were selected for subcloning.
Cell culture media of subcloned hybridomas was concentrated in Amicon ProFlux
Ml 2 tangential filtration systems using an Amicon S3Y30 UF membranes. The
concentrated media was passed over protein-A Sephaose columns (5 to 20 ml column) at
a flow rate of 5 ml/min. The columns were washed with buffer A (PBS, pH 7.4) until the
absorbance returned to baseline and the bound polypeptides were eluted with 50 mM
citric acid, pH 3.2. Fractions were immediately neutralized with 1M Tris, pH 8.0.
Fractions were then analyzed by SDS-PAGE. Fractions containing antibody were pooled
and concentrated using an Ultrafree centrifugal filter unit (Millipore, 10 kDa molecular
weight cut-off).
Example 2: Functional Activity of Anti-hTNFSF13b Human Antibodies
Neutralizing activity of the anti-hTNFSF13b human antibodies of the invention
was measured using a murine II-1 dependent B cell line, T1165.17. The cells were
washed three times with assay media (RPM11640 containing 10% FBS, 1 mM sodium
pyruvate, 5 x 10-5 M 2-mercaptoethanoJ and penicillin, streptomycin and fungizone) to
remove IL-1. The cells were resuspended at 100,000 cells/ml in assay media containing
2.5 ng/ml soluble huTNFSF13b and plated at 5000 cells/well in a 96 well plate and
incubated at 37°C in 5% CO2. Supematants from ELISA positive hybridomas were
included at a 1:4 dilution. Forty-eight hours later, 20 µl of Promega CellTiter 96 Aqueous
One Solution (Madison, WI) was added and the plate incubated for 5 more hours at 37°C
in 5% CO2. Absorbance was read at A490, to measure proliferation. An example of
neutralization activity for one of the hybridoma supematants, 4A5-3.1.1-B4, is shown in
Figure 1. As a control, the antibodies were added to IL-1 stimulated cells. There was no
evidence of inhibition of IL-1 stimulated proliferation, only the hTNFSF13b stimulated
proliferation.
The neutralizing antibodies were tested for the ability to inhibit TNFSF13b
augmented primary human B cell proliferation in response to anti-IgM stimulation.
Primary human B cells were isolated from human blood using CD 19 positive selection
using the MACS magnetic isolation system (Miltenyi Biotec, Auburn, CA). The B cells
were added to wells of a 96-well plate at 2 x 105 cells per well in complete RPMI
containing 10% FCS (complete RPMI is RPMI1640 containing 10 mM L-glutamine, 100
U/ml penicillin, 100 µg/ml streptomycin, 1 mM sodium puruvate, 0.1 mM non-essential
amino acids, and 1 x 10-5 M ß-mercaptoethanol). Some of the wells were coated with 10
µg/ml anti-human JgM in PBS (BD PharMingen, Clone G20-127), overnight at 4°C and
washed four times with PBS before use. Some of the cells were stimulated with soluble
hTNFSFl 3b (25 ng/ml) in the presence or absence of neutralizing anti-hTNFSF13b
antibody (2.5 µg/ml). Figure 2 illustrates the ability of 4A5-3.1.1-B4 to neutralize the
stimulatory effect of hTNFSF13b.
Example 3: Characterization of Monoclonal Antibodies
All of the neutralizing anti-hTNFSFl 3b antibodies were either human 1gGl or
human IgG4. They were also assayed for their ability to bind to hTNFSF13b in a
denatured state, i.e., hTNFSF13b separated on SDS-PAGE and blotted onto
nitrocellulose. All of the neutralizing antibodies failed to bind hTNFSFl 3b in a Western
blot while several of the non-neutralizing antibodies were able to do so.
Experiments utilizing the BIACore system were performed to determine if non-
neutralizing antibodies and neutralizing antibodies bound to the same site on
hTNFSF13b. First, 4A5-3.1.1-B4 was coated onto a chip followed by injection of
hTNFSFl 3b and then a saturating amount of non-neutralizing antibody. Once saturation
was achieved, a high concentration of 4A5-3.1.1-B4 was run over the chip. Eleven of the
non-neutralizing monoclonal antibodies were unable to compete for the same binding site
as 4A5-3.1.1-B4. One non-neutralizing hybridoma was able to block the binding of 4A5-
3.1.1-B4 by approximately 45%, indicating that it may have an epitope near the 4A5-
3.1.1-B4 epitope.
Using the same experimental design, it was also determined that the neutralizing
mAb, 4A5-3.1.1-B4, could compete for the same binding site as one of the receptors for
hTNFSF 13b, TACl. These experiments suggest that TACl-Fc and 4A5-3.1.1-B4 may
have overlapping epitopes on hTNFSF13b.
4 A5-3.1.1-B4 was immobilized on a solid phase by passing the antibody solution
over an IMAC resin loaded with Co+2. Following binding, the cobalt was oxidized to the
+3 state by incubation of the resin with a dilute peroxide solution. After washing the
resin, native hTNFSF13b and hTNFSFl3b that was modified (by reduction/alkylation or
by thermal denaturation) was passed over the column. After washing, the bound protein
was eluted with an acidic solution and the eluted proteins were analyzed by MALDI MS.
4A5-3.1.1-B4 bound native recombinant hTNFSF13b, but did not bind either the
chemically or thermally modified hTNFSFl 3b. Therefore, the 4A5-3.1.1-B4 appears to
recognize a conformational epitope on soluble hTNFSF13b.
Recombinant soluble hTNFSFl 3b (RDI) was incubated with 4A5-3.1.1-B4 or
anti-TNFSFl 3b rabbit polyclonal antibody (MoBiTec, Marco Island, FL; against amino
acids 254 to 269 of hTNFSF13b) on ice for 2 hours and the protein mixture was applied
to a size-exclusion HPLC (two, tandem TosoHaas TSK-GEL G3000PW columns)
equilibrated in PBS at a flow rate of 0.25 ml/min. Proteins were eluted with PBS. As
controls, antibody solutions and the solution of hTNFSFl 3b were analyzed separately.
Human TNFSF13b eluted from the size exclusion column in a position consistent with a
trimer of TNFSF13b molecules. The elution of trimeric hTNFSFl 3b shifted to an earlier
timepoint in the presence of 4A5-3.1.1-B4 but not in the presence of anti-TNFSF13b
polyclonal antibodies indicating the binding of trimeric hTNFSF 13b to the 4 A5-3.1.1-B4
antibody. This data suggests that the neutralizing mAb 4A5-3.1.1-B4 binds to a
conformational epitope on hTNFSF 13b.
Example 4: Affinity Measurement of Monoclonal Antibodies by BIAcore
The affinity of various anti-hTNFSF13b human antibodies for hTNFSF13b was
measured using a BIAcore 2000 instrument system. The system utilizes the optical
properties of Surface Plasmon Resonance to detect alteration in protein concentration of
interacting molecules within a dextran biosensor matrix. Except where noted, all reagents
and materials were purchased from BIAcore AB (Upsala, Sweden). All measurements
were performed at 25°C. Samples were dissolved in HBS-EP buffer (150 mM NaCl, 3
mM EDTA, 0.005% (w/v) surfactant P-20, and 10 mM HEPES, pH 7.4). Goat ami-
mouse IgG (Fc specific; Jackson Immunoresearch, West Grove, PA) was immobilized on
flow cell 1 on a CM5 sensor chip using the amine coupling kit. Goat anti-human IgG (Fc
specific; Jackson Immunoresearch) was immobilized on flow cell 2 also by amine
coupling. Both antibodies were immobilized to reach 700 response units each.
Binding of recombinant hTNFSF13b (Research Diagnostics, Inc., Flanders, NJ)
was evaluated using multiple analytical cycles. Each cycle was performed at a flow rate
of 30 nl/min. and consisted of the following steps: injection of 150 µl of 4A5-3.1.1-B4 at
20 ng/ml, injection of 250 µl of hTNFSFl 3b (starling at 50 nM and using 2 fold serial
dilutions for each cycle) followed by 15 minutes for dissociation, and regeneration using
90 nl of 10 mM glycine HC1, pH 1.5.
Association and dissociation rates for each cycle were evaluated using a Langmuir
1:1 binding model in the BlAevaluation software. The KD of 4A5-3.1.1-B4 for
hTNFSFl 3b was determined to be 38 pM.
Example 5: Cloning and Sequencing of Heavy and Light Chain Antigen Binding
Regions
The variable region for the heavy and light chain for the neutralizing human mAb
4A5-3.1.1-B4 were cloned and sequenced using the following protocols.
mRNA was prepared from 2 x 106 hybridoma cells using the Micro-Fast Track
protocol (Invitrogen) supplied with the kit. cDNA was prepared from 200 µl of ethanol
precipitate of mRNA using cDNA Cycle kit (lnvitrogen) by spinning the aliquot of
mRNA for 30 min. at 14,000 rpm at 4°C followed by washing the pellet with 70%
ethanol. The air dried pellet was resuspended in 11.5 µl of sterile water and cDNA was
prepared following the kit's instructions. The optional second round of cDNA systhesis
was omitted but the cDNA was cleaned using the pheno/chlorform extraction step and
ethanol precipitation. The cDNA pellet was resuspended in 30 µl of TE for use in PCR.
The PCR reactions were set up with degenerate primers at the 5' end of the
variable region for the heavy and light chain paired with 3' primers in the constant region.
For each 50 µl reaction, 1 µl of cDNA was used. The reaction was set up as directed for
use with Pful followed by 20 cycles. The PCR products were checked by running 5 µl of
each reaction on a 1% agarose gel. The positive reactions were cloned using the Zero
Blunt TOPO PCR cloning kit (Invitrogen). Minipreps from the positive clones were
sequenced and analyzed for productive gene rearrangements. Results from independenl
PCR reactions and sequencing of multiple clones revealed the sequences as described
below.
Example 6: Species Crossreactivity of Anti-hTNFSF13b Human Antibodies with
non-human TNFSF13b
In order to determine the species crossreactivity of the neutralizing mAbs, an
ELISA was set up utilizing 4A5-3.1.1-B4 as both the capture and detecting mAb. Human
recombinant TNFSF13b was used as the standard curve. Human TNFSF13b could be
detected in the culture supernatant from CHO cells transfected with a vector expressing
hTNFSF13b, supematants from cultured human monocytes or human serum or plasma.
Supematants from CHO cells expressing murine TNFSF13b were tested for reactivity in
the ELISA and were negative. 4A5-3.1.1-B4 was also unable to immunopreciptate
murine TNFSF13b but was able to immunoprecipitate human TNFSF13b. Murine
TNFSF13b was used in the proliferation assay described in Example 2. Using this
proliferation assay, 4A5-3.1.1-B4 was unable to neutralize the proliferation induced by
murine TNFSF13b. This indicates that 4A5-3.1.1-B4 is unable to recognize murine
TNFSF13b.
Example 7: Amino Acid sequence of Heavy Chain 4A5-3.1.1-B4
Below is the amino acid sequence of the heavy chain 4A5-3.1.1-B4 antibody
which comprises the HCVR and the lgG4 constant region. The human IgG4 constant
region has a serine at position 231. However, this position at 231 was substituted from a
serine to a proline which introduces a structural change in the hinge region for obtaining
optimal inter-chain disulfide bonds. This reduces the generation of half antibodies. Half
antibodies are formed from one heavy chain and one light chain.
In addition, an alanine for phenylalanine substitution at position 237 and an
alanine or glutamic acid substitituion for leucine at position 238 can be made to lessen the
effector function of the antibody.
Example 8: Amino Acid sequence of Heavy Chain 4A5-3.1.1-B4
Below is the amino acid sequence of the heavy chain 4A5-3.1.1-B4 antibody
which comprises the HCVR and the IgGl constant region.

Example 9: Amino Acid sequence of Light Chain 4A5-3.1-1-B4
Below is the amino acid sequence of the light chain 4A5-3.1.1-B4 antibody which
comprises the LCVR and the kappa constant region.

Example 10: Identification of the Epitope Tor 4AS-3.1.1-B4
The epitope to which 4A5-3.1.1-B4 bound and neutralized human TNFSF13b was
determined. Human and murine TNFSF13b sequences were aligned as shown below:

A homology model was created for human TNFSF13b based on the known crystal
structure for several TNF family members. Exposed residues that are different between
mouse and human TNFSF13b are potential binding sites for 4A5-3.1.1-B4 since 4A5-
3.1.1-B4 neutralizes human but not mouse TNFSF13b.
Three potential epitopes were identified: 1) K71, T72, Y73, El05; 2) Q26, S29,
L139, D140; and 3) L53, K55, ES6, K119. Mutagenesis was performed to make chimeric
molecules by changing the amino acid sequence from human to mouse. Chimera A was
L139R, D140N; Chimera B was K71P, T721, Y73F; Chimera C was K71P, T721, Y73F,
E105K; Chimera D was L53V, K55R, E56Q; Chimera E was E105K.
Using the proliferation assay as described in Example 2, all of the chimeras were
tested for functional activity and neutralization by 4A5-3.1.1-B4. Initial assays were
performed using supematants from 293 transient transfections for each of the chimeras
and both human TNFSF13b and murine TNFSF13b parent molecules. All of the
chimeras induced similar proliferation indicating that the chimeras produced were
functional. Using 6 ug/ml of 4A5-3.1.1-B4, 100% neutralization was observed with
human TNFSF13b and chimeras A, B, D and E. No neutralization was observed for
murine TNFSF13b or chimera C. Purified TNFSF13b mutants were produced for
chimera A, B, and C and the assay was repeated using 11 ng/ml of each parent TNFSF13b
or chimera TNFSF13b and 1 ug/ml of 4A5-3.1.1-B4. The results showed 100%
neutralization was observed with human TNFSF13b and chimera A, 88% neutralization
with chimera B, and no neutralization was observed for murine TNFSF13b or chimera C.
Example 11: In vivo studies using 4A5-3.1.1-B4
Transgenic mice overexpressing soluble human TNFSF13b are generated using
established techniques as described by Hogan, B. et al. (1986) Manipulating the Mouse
Embryo: A Laboratory Manual. Cold Spring Harbor Laboratory, NY] as modified by Fox
and Solter (Mol. Cell. Biol. 8: 5470, 1988). Briefly, a DNA fragment encompassing the
hTNFSF13b gene is microinjected into the male pronuclei of newly fertilized one-cell-
stagc embryos (zygotes) of the FVB/N strain. The embryos are cultured in vitro overnight
to allow development to the two-cell-stage. Two-cell embryos are then transplanted into
the oviducts of pseudopregnant CD-I strain mice to allow development to term. To test
for the presence of the transgene in the newborn mice, a small piece of toe is removed
from each animal and digested with proteinase K to release the nucleic acids. A sample
of the toe extract is subsequently subjected to PCR analysis to identify transgene-
containing mice.
The hTNFSF13b transgenic mice had a dramatic increase in peripheral B cells,
generally about three fold compared to age and sex matched littermates. There was a
slight increase in peripheral T cells as well. The hTNFSF13b transgenic mice were
treated with 4A5-3.1.1-B4 to determine if neutralization of hTNFSF13b would result in a
reduction in B cell numbers back to normal levels. At 15 weeks old, female hTNFSF13b
mice were injected subcutaneously twice a week for three weeks with either 25 ug of
4A5-3.1.1-B4 or isotype control antibody. Four days after the last injection of antibody,
the mice were sacrificed and the spleen removed for analysis. B and T cell numbers were
calculated by determining the percentage of CD 19+ cells, for B cells, and CD3+ cells, for
T cells using flow cytometry and absolute white blood cell count for each spleen. The
results are shown below demonstrate that in vivo administration of 4A5-3.1.1-B4 to
hTNFSFl 3b transgenic mice is able to restore the normal numbers of T and B cells
(average + standard deviation)
Sequences of the present: invention:
SEQ ID NO:1 ? polynucleotide sequence encoding light chain variable
region
GAAATTGTGTTGACGCAGTCTCCAGCCACCCTGTCTTTGTCTCCAGG
GGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCCGCTACT
TAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
GATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGG
GTCTGGGACAGACTCCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATT
TTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCGGACGTTCGGC
CAAGGGACCAAGGTGGAAATCAAACGAACT
SEQ ID NO: 2 ? amino acid sequence encoding light chain variable region
EIVLTQSPATLSLSPGERATLSCRASQSVSRYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDST
LTISSLEPEDFAVYYCQQRSNWPRTFGQGTKVEIKRT
SEQ ID NO:3 ? polynucleotide sequence encoding light chain CDR1
AGGGCCAGTCAGAGTGTTAGCCGCTACTTAGCC
SEQ ID NO:4 ? amino acid sequence encoding light chain CDR1
RASQSVSRYLA
SEQ ID NO:5 ? polynucleotide sequence encoding light chain CDR2
GATGCATCCAACAGGGCCACT
SEQ ID NO:6 ? amino acid sequence encoding light chain CDR2
DASNRAT
SEQ ID NO:7 ? polynucleotide sequence encoding light chain CDR3
CAGCAGCGTAGCAACTGGCCTCGGACG
SEQ ID NO:8 ? amino acid sequence encoding light chain CDR3
QQRSNWPRT
SEQ ID NO:9 ? polynucleotide sequence encoding heavy chain variable
region
ATGAAA
CACCTGTGGTTCTTCCTCCTCCTGGTGGCAGCTCCCAGATGGGTCCTGTC
CCAGGTGCAACTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGA
CCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTGGTTACTAC
TGGAGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGA
AATCAATCATAGTGGAAGCACCAACTACAACCCGTCCCTCAAGAGTCGAG
TCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGC
TCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGCGAGAGGGTATTA
CGATATTTTGACTGGTTATTATTACTACTTTGACTACTGGGGCCAGGGAA
CCCTGGTCACCGTCTCCTCA
SEQ ID NO:10 ? amino acid sequence encoding heavy chain variable region
MKHLWFFLLLVAAPRWVLSQVQLQQWGAGLLKPSETUSLTCAVYGGSFSGYYWSWIRQPPGKGLEWIGEINH
SGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARGYYDILTGYYYYFDYWGOGTLVTVSS
SEO ID NO:11 ? polynucleotide sequence encoding heavy chain CDR1
GGTGGGTCCTTCAGTGGTTACTACTGGAGC
SEQ ID NO:12 ? amino acid sequence encoding heavy chain CDR1
GGSFSGYYWS
SEQ ID NO:13 ? polynucleotide sequence encoding heavy chain CDR2
GAAATCAATCATAGTGGAAGCACCAACTACAACCCGTCCCTCAAGAGT
SEO ID NO:14 ? ammo acid sequence encoding heavy chain CDR2
EINHSGSTNYNPSLKS
SEQ ID NO:15 ? polynucleotide sequence encoding heavy chain CDR3
GGGTATTACGATATTTTGACTGGTTATTATTACTACTTTGACTAC
SEQ ID NO:16 ? amino acid sequence encoding heavy chain CDR3
We Claim:
1. An anti-hTNFSF13b human antibody comprising at least three of the polypeptides
selected from the group consisting of:
a. SEQ ID NO: 4 located at CDR1 of the light chain variable region (LCVR);
b. SEQ ID NO: 6 located at CDR2 of the LCVR;
c. SEQ ID NO: 8 located at CDR3 of the LCVR;
d. SEQ ID NO: 12 located at CDR1 of the heavy chain variable region
(HCVR);
e. SEQ ID NO: 14 located at CDR2 of the HCVR; and
f. SEQ ID NO: 16 located at CDR3 of the HCVR.
2. The antibody as claimed as 1 comprising at least four of the polypeptides selected from
the group consisting of:
a. SEQ ID NO:. 4 located at CDR1 of the light chain variable region (LCVR);
b. SEQ ID NO: 6 located at CDR2 of the LCVR;
c. SEQ ID NO: 8 located at CDR3 of the LCVR;
d. SEQ ID NO: 12 located at CDR1 of the heavy chain variable region
(HCVR);
e. SEQ ID NO: 14 located at CDR2 of the HCVR; and
f. SEQ ID NO: 16 located at,CDR3 of the HCVR.
3. The antibody as claimed in 1 comprising at least five of the polypeptides selected from
the group consisting of:
a. SEQ ID NO: 4 located at CDR1 of the light chain variable region (LCVR);
b. SEQ ID NO: 6 located at CDR2 of the LCVR;
c. SEQ ID NO: 8 located at CDR3 of the LCVR;
d. SEQ ID NO: 12 located at CDR1 of the heavy chain variable region
(HCVR);
e. SEQ ID NO: 14 located at CDR2 of the HCVR; and
f. SEQ ID NO: 16 located at CDR3 of the HCVR.
4. The antibody as claimed in 1 comprising the polypeptides of:
a. SEQ ID NO: 4 located at CDR1 of the light chain variable region (LCVR);
b. SEQ ID NO: 6 located at CDR2 of the LCVR;
c. SEQ ID NO: 8 located at CDR3 of the LCVR;
d. SEQ ID NO: 12 located at CDR1 of the heavy chain variable region
(HCVR);
e. SEQ ID NO: 14 located at CDR2 of the HCVR; and
f. SEQ ID NO: 16 located at CDR3 of the HCVR.
5. An anti-hTNFSF13b human antibody comprising a light chain variable region
(LCVR) polypeptide as shown in SEQ ID NO: 2 or a heavy chain variable region
(HCVR) polypeptide as shown in SEQ ID NO: 10.
6. The antibody of claim 5 comprising the LCVR polypeptide as shown in SEQ ID
NO: 2 and the HCVR polypeptide as shown in SEQ ID NO: 10.
7. The antibody of claim 6 further comprising an IgG4 constant region with a proline
substituted for serine at position 231.
8. An antibody or fragment thereof that competitively inhibits the specific binding of
the 4A5-3.1.1-B4 antibody produced by the hybridoma of ATCC Deposit Number
PTA- 3674 to hTNFSF13b.
9. An antibody that neutralizes TNFSF13b activity by binding an epitope of
TNFSF13b, wherein the epitope comprises lysine at position 71, threonine at
position 72, tyrosine at position 73, and glutamic acid at position 105.
10. An antibody or fragment thereof comprising an amino acid sequence of heavy
chain 4A5-3.1.1-B4 represented in Example 7 and an amino acid sequence of light
chain 4A5-3.1.1-B4 represented in Example 9.
11. A pharmaceutical composition comprising the antibody of any of claims 1-10.
12. A packaging material comprising an antibody within said packaging material,
wherein the antibody neutralizes TNFSF13b activity for treatment or prevention of
a human subject suffering from a disorder in which TNFSF13b activity is
detrimental, and wherein the packaging material comprises a package insert which
indicates that the antibody neutralizes by binding an epitope of TNFSF13b,
wherein the epitope comprises lysine at position 71, threonine at position 72,
tyrosine at position 73, and glutamic acid at position 105.
13. A packaging material as claimed in claim 12, wherein the antibody is any of
claims 1-12
14. A packaging material as claimed in claim 12, wherein the antibody comprises the
LCVR polypeptide as shown in SEQ ID NO: 2 and the HCVR polypeptide as
shown in SEQ ID NO: 10.
15. The antibody of any one of claims 1-10 in the manufacture of a
medicament for administration to subject suffering from a disorder selected from
the group consisting of systemic lupus erythematosus, rheumatoid arthritis,
juvenile chronic arthritis, Lyme arthritis, Crohn's disease, ulcerative colitis,
inflammatory bowel disease, asthma, allergic diseases, psoriasis, acute or chronic
immune disease associated with organ transplantation, organ transplant rejection,
graft-versus-host disease, sarcoidosis, infectious diseases, parasitic diseases,
female infertility, autoimmune thrombocytopenia, autoimmune thyroid disease,
Hashimoto's disease, Sjogren's syndrome, and cancer.
Human monoclonal antibodies that specifically bind to TNFSF13b polypeptides are
disclosed. These antibodies have high affinity for hTNFSF13b, a slow off rate for
TNFSF13b dissociation and neutralize TNFSF13b activity in vitro and in vivo. The
antibodies of the invention are useful in one embodiment for inhibiting TNFSF13b
activity in a human subject suffering from a disorder in which hTNFSF13b activity is
detrimental. Nucleic acids encoding the antibodies of the present invention, as well as,
vectors and host cells for expressing them are also encompassed by the invention.

Documents:


Patent Number 223757
Indian Patent Application Number 00210/KOLNP/2004
PG Journal Number 39/2008
Publication Date 26-Sep-2008
Grant Date 23-Sep-2008
Date of Filing 16-Feb-2004
Name of Patentee ELI LILLY AND COMPANY
Applicant Address CITY OF INDIANAPOLIS, STATE OF INDIANA
Inventors:
# Inventor's Name Inventor's Address
1 GELFANOVA, VALENTINA, PAVLOVNA 6114 LAKEVIEW DRIVE #172, INDIANAPOLIS, IN 46224
2 HALE, JOHN, EDWARD 7644 FOREST DRIVE, FISHERS, IN 46038
3 KIKLY, KRISTINE, KAY 6458 NORTH, 50 EAST, FORTVILLE, IN 46040
4 WITCHER, DERRICK, KAY 10898 PARROT COURT, FISHERS, IN 46038
5 RATHNACHALAM, RADHAKRISHNAN 3793 LATTICE COURT, CARMEL, IN 46032
PCT International Classification Number C12N
PCT International Application Number PCT/US02/21842
PCT International Filing date 2002-08-15
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 60/312808 2001-08-16 U.S.A.