Title of Invention

"PROCESS FOR THE ISOLATION OF A TNF-BINDING PROTEIN"

Abstract Process for the isolation of a TNF-binding protein comprising eluting a crude solution of the TNF-binding protein on an Immobilized Metal Affinity Chromatography (IMAC) using copper as metal at a pH between 2.8 and 3.2, wherein the TNF-binding protein is a recombinant, extracellular, soluble fragment of human TNF Receptor-1 (recombinant h-TBP-1).
Full Text PROCESS FOR THE PURIFICATION OF TNF-BINDING PROTEINS USING IMAC
FIELD OF THE INVENTION
This Invention relates to the field of polypeptide purification. More specifically, It
relates to the purification of Tumor Necrosis Factor-binding
BACKGROUND OF THE INVENTION
Tumor necrosis factor-alpha (TNFA), a potent cytokine, elicits a broad spectrum
of biologic responses which are mediated by binding to a cell surface receptor. The
receptor for human TNF-alpha may bejsqlated from a human jilstiocyjicilymphorna,cell __
Jne (see Stauberet al., J. Blo^Chem., 263, 19098-104, 1988).
Using monoclonal antibodies, another group obtained evidence for 2 distinct
TNF-binding proteins, both of which bind TNF-alpha and TNF-beta specifically and with
high affinity (see Brockhaus et al., Proc. Nat. Acad. Sci. 87: 7380-7384, 1990) and
isolated the cDNA for one of the receptors. They found that it encodes a protein of 455
amino acids that Is divided into an extracellular domain of 171 residues and a
cytoplasmic domain of 221 residues.
Later on another group (see Aggarwal et al. Nature 318: 665-667, 1985)
showed that tumor necrosis factors alpha and beta initiate their effects on cell function
by binding to common cell surface receptors. The TNF alpha and TNF beta receptors
have different sizes and are expressed differentially in different cell lines (see
Engelmann etal., J. Biol. Chem. 265: 1531-1536, 1990).
TNF alpha Receptor I, referred to by some as TNFR55, is the smaller of .the 2
receptors. cDNAs for both receptors have been cloned and their nucleic acid sequence
determined (see Loetscher et al., Cell 61: 351-359, 1990; Nophar et al., EMBO J. 9:
3269-3278, 1990; Schall et al., Cell 61: 361-370, 1990 and Smith et al., Science 248:
1019-1023, 1990).
Whereas the extracellular domains of the 2 receptors are strikingly similar in
structure, their intracellular domains appear to be unrelated. Southern blotting of
human genomic DNA, using the cDNAs of the 2 receptors as probes, indicated that
each is encoded by a single gene.
Several approaches have been attempted to purify polypeptides.
Chromatography is one of the means most commonly used, including affinity
chromatography in which the substance to be purified is first adsorbed to a bed or
column of a suitable support on which agents having affinity for the given substance
are immobilized to capture it and let the remaining components of the raw mixture pass
unbound. The adsorbed substance is then eluted by changing such environmental
conditions as pH and/or salt concentration to give a partially or totally purified molecule.
In the field of affinity chromatography, the technique known as IMAC
(Immobilized Metal Affinity Chromatography) has been described as particularly
efficient in certain cases (see the review article by Arnold, Biotechnology, Vol. 9, page
151-156, Feb. 1991). IMAC is described as a powerful technique in the purification of
poiypeptides having functional groups that participate in metal binding, such as the side
chains of Glu, Tyr, Cys, His, Asp and Met, as well as the amino-termlnal amide
nitrogens and backbone carbonyl oxygens.
Although the technique is powerful, it does not always have the required
specificity. For example, it has been ascertained that adsorption on a Cu2* containing
chromatographfc column is excellent for poiypeptides containing one or preferably
more histidines, but it was also observed that even in the absence of the three amino -
acids considered to be most important for adsorption, namely histidine, tryptophan and
cysteine, adsorption of protein may occur, thus impairing the specificity of the
purification step.
The adsorption efficiency, although generally satisfactory for purification
purposes, may not be optimal particularly when the polypeptide to be purified is a
glycoprotein. In this case very often the carbohydrate chains may conceal the sites
active for the binding to the metal cheiate and reduce the affinity for the
chromatographic column in the adsorption step.
DESCRIPTION OF THE INVENTION
It has now been found that TNF-binding proteins can be efficiently purified by
means of a process including an Immobilized Metal Affinity Chromatography (IMAC)
step using copper as metal. Optimal conditions of pH and salinity for this step are a pH
of 2.8 to 3.2, preferably pH 3, and a salinity of 14 to 16 rnS, preferably of 15 mS.
According to the present invention TNF-binding proteins" means any protein
which has an affinity for TNF-alpha or TNF-beta and/or a protein which comprises in
the extra-cellular, soluble fragment of a protein belonging to the TNF receptors family,
or a fragment thereof
Some examples of members of the TNF receptor family are the following:
> Tumor Necrosis Factor Receptor 1 (TNFR1), also called Tumor Necrosis Factor
Receptor Superfamily, Member 1A (TNFRSF1A), or Tumor Necrosis Factoralpha
Receptor (TNFAR) or TNFR 55-KD or TNFR 60-KD (see description at
OMIM*191190 http:7Avww.ncbi.nlm.nih.gov/entrez/query.fcgi7dbsOMIM)
> Tumor Necrosis Factor Receptor 2 (TNFR2), also called Tumor Necrosis Factor
Receptor Subfamily , Member 1B (TNFRSF1B) , or Tumor Necrosis Factor -
beta Receptor (TNFBR) or TNFR 75-KD or TNFR 80-KD (see description at
OMIM*191191);
> OX40 Antigen (0X40), also called Tumor Necrosis Factor Receptor
Superfamily, Member 4 (TNFRSF4), or Tax-Transcriptionaily Activated
Glycoprotein 1 Receptor ( TXGP1L) or Lymphoid Activation Antigen ACT35
(ACT35) or CD134 (see description at OMIM*600315);
> C040L Receptor (CD40), also called Tumor Necrosis Factor Receptor
Superfamily, Member 5 (TNFRSF5) or B-cell surface antigen CD40, or GDw40
or Bp50 (see description at Swiss-Prat Entry No. P25942);
>• FASL Receptor (FAS), also called Tumor Necrosis Factor Receptor
Superfamily, Member 6 (TNFRSF6), or Apoptosis-Mediating Surface Antigen
FAS or Apo-1 Antigen or CD95 (see description at Swiss-Prot Entry No.
P25445);
> Decoy Receptor 3 (DcR3), also called Tumor Necrosis Factor Receptor
Superfamily, Member 6B (TNFRSF6B) or Decoy Receptor for FAS Ligand or
M68 (see description at Swiss-Prot Entry No. O95407);
> CD27 Atnigen (CD27), also called Tumor Necrosis Factor Receptor
Superfamily, Member 7 (TNFRSF7) or T-Cell Activation Antigen S152 (S152)
(see description at OMIM*602250);
> Lymphoid Activation Antigen CD30 (CD 30), also called Tumor Necrosis Factor
Receptor Superfamily, Member 8 orNFRSF8) (see description at
OMIM*153243)
> Induced By Lymphocyte Activation (ILA), also called Tumor Necrosis Factor
Receptor Superfamily, Member 9 (TNFRSF9) or CD137 (see description at
OMIM*602250);
> Death Receptor 4 (DR4), also called Tumor Necrosis Factor Receptor
Superfamily, Member 10A (TNFRSF10A), or TNF-Related Apoptosls-lnducing
Ligand Receptor 1 (TRAILR1) or APO2 (see description at OMIM*603611);
> Death Receptor 5 (DR5), also called Tumor Necrosis Factor Receptor
Superfamily, Member 10B (TNFRSF10B), or TNF-Related Apoptosis-lnducing
Ligand Receptor 2 (TRAILR2) or Killer/DR5 or TRICK2 (see description at
OMIM '603612);
> Decoy Receptor 1 (DCR1), also called Tumor Necrosis Factor Receptor
Superfamily, Member 10C (TNFRSF10C), or TNF-Related Apoptosis-lnducing
Ligand Receptor 3 (TRAILR3), or TRAIL Receptor Without An Intracellufar
Domain (TRID) (see description at OMIM*603613);
> Decoy Receptor 2 (DCR2), also called Tumor Necrosis Factor Receptor
Superfamily, Member 10D (TNFRSF10D) or TNF-Related Apoptosis-lnducing
Ligand Receptor 4 (TRAILR4) or TRAIL Receptor With A Truncated Death
Domain (TRUNDD) (see description at OMIM*603014);
> Receptor Activator of NF-KAPPA-B (RANK), also called Tumor Necrosis Factor
Receptor Superfamily, Member 11A (TNFRSF11A), or Osteoclast
Differentiation Factor Receptor (ODFR) or PDB2 or TRANCER (see description
atOMIM*603499);
> Osteoprotegerin (OPG), also called Tumor Necrosis Factor Receptor
Superfamily, Member 11B (TNFRSF11B) or Osteoclastogenesis Inhibitory
Factor (OCIF) (see description at OMIM*602643);
> Death Receptor 3 (DR3), also called Tumor Necrosis Factor Receptor
Superfamily, Member 12 (TNFRSF12), or APO3 or Lymphocyte-Associated
Receptor of Death (LARD) (see description at OMIM*603366);
> Transmembrane Activator And Caml Interactor (TACI), also called Tumor
Necrosis Factor Receptor Superfamily, Member 13B (TNFRSF13B) (see
description at OMIM*604907);
> BAFF Receptor (BAFFR), also called Tumor Necrosis Factor Receptor
Superfamily, Member 13C (TNFRSF13C), or B Cell-Activating Factor Receptor
(see description at OMIM*606269);
> Herpesvirus Entry Mediator (HVEM), also called Tumor Necrosis Factor
Receptor Superfamily, Member 14 (TNFRSF14), or H erpesvirus Entry Mediator
A (HVEA) orTR2 (see description at OMIM*602746);
^ s
> Nerve Growth Factor Receptor (NGFR), also called Tumor Necrosis Factor
Receptor Superfamily, Member 16 (TNFRSF16) or p75(NTR) (see description
atOMIM*162010);
> B-Cell Maturation Factor (BCMA), also called Tumor Necrosis Factor Receptor
Superfamily, Member 17 (TNFRSF17) or BCM (see description at
OMIM*109545);
> Glucocorticoid-lnduced TNFR-Related Gene (GITR), also called Tumor
Necrosis Factor Receptor Superfamily. Member 18 (TNFRSF18), or Activationfnducible
TNFR Family Member (AITR) (see description at OMIM*603905);
> TRADE, also called Tumor Necrosis Factor Receptor Superfamily, Member 19
(TNFRSF19), or Toxicity and JNK Inducer or TROY or TAJ (see description at
Swiss-Prot Entry No. Q9NS68);
> X-linked Ectodyplasin-A2 Receptor (XEDAR), also called EDA^A2 receptor (see
description at Swiss-Prot Entry No. Q9HAV5) and
> DEATH RECEPTOR 6 (DR6), also called Tumor Necrosis Factor Receptor
Superfamily, Member 21 (TNFRSF21) (see description at OMIM*605732).
According to a preferred embodiment of the invention the TNF-binding protein is
selected from recombinant h-TBP-1 (recombinant, extracellular, soluble fragment of
human TNF Receptor-1, comprising the amino acid sequence corresponding to the 20-
180 amino acids fragment of Nophar et al.) and recombinant h-TBP-2 (recombinant,
extracellular, soluble fragment of TNF Receptor-2, comprising the amino acid
sequence corresponding to 23-257 of Smith et al.). Most preferably, it is recombinant
hTBP-1 (r-hTBP-1). For all the other proteins the soluble, extracellular domain is
indicated in the corresponding Swiss-Prot entry.
According to another preferred embodiment of the invention, the purification
process of the TNF-binding protein includes the "IMAC" step as the "capture step" and
further comprise the following steps, as "intermediate steps": ion exchange
chromatography (IEC) at an acidic pH (preferably between 3 and 4) followed by ion
exchange chromatography at a basic pH (preferably between 8 and 10}.
According to a further preferred embodiment of the invention the purification
process of the TNF-binding protein further comprises, as "polishing step" hydrophobic
interaction chromatography (HIC).
More preferably each of the above mentioned chromatography step is followed
by an ultrafiltration.
"Capture step" according to the present invention means the step during which
the recombinant TNF-binding protein is isolated and concentrated from the crude
harvest supernatant of the recombinant host cells culture containing it. A high yield at
the end of this initial step has a big impact on the overa II performance and yield of the
process. According to the present invention, the capture step carried out on Cu -Chelate
FF and, preferably, with an elutlon at pH 3.0 yields a product having a purity > 40% and
a recovery > 80%.
"Intermediate steps" are the steps during which most of the bulk impurities,
such as other proteins and nucleic acids, endotoxins and viruses are removed.
"Polishing steps" are the steps during which any remining trace impurities or
closely related substances are removed, inorderto obtain a high purity protein.
"Ion exchange chromatography" (IEC) is capable of separating molecules that
have only slight differences in charge to give a very high resolution separation.
Fractions are collected in purified, concentrated form. The separation is based on the
reversible interaction between a charged molecule and an oppositely charged
chromatographic medium. Molecules bind as they are loaded onto the column.
Conditions are then altered so that the bound substances are eluted differentially.
Elution is usually performed by changes in salt concentration or pH. Changes are made
stepwise or with a continuous gradient Q Sepharose or SP Sepharose columns are
commonly used in ion exchange chromatography. "Q Sepharose" is a quaternary
ammonium strong anion exchanger (charged groups: - N *(CH3)3), whereas "SP
Sepharose" is a sulfopropyl strong cation exchanger (charged groups: - SO3")
Hydrophobic interaction chromatography (HIC) is a versatile method for the
purification and separation of biomolecules based on differences in their surface
hydrophobicity. Proteins and peptides usually sequester hydrophobic amino acids in
domains away from the surface of the molecule. However, many biomolecules
considered hydrophilic have sufficient hydrophobic groups exposed to allow interaction
with hydrophobic ligands attached to the chromatographic matrix. Compared to
reversed phase chromatography, the density of the ligand on the matrix is much lower.
This feature promotes the high selectivity of HIC, while allowing m ild elution conditions
to help preserve biological activity. "Butyl Sepharose" column is preferably used
according to the present invention in the hydrophobic interaction chromatography (HIC)
step. On this column the n-butyl group is used as hydrophobic ligand.
According to the present invention, the TNF-binding proteins are produced by
means of recombinant DNA technology in eukaryotic, preferably mammalian, cells. The
recombinant process for producing them is here below reported for completeness.
In the initial step of the process the DNA sequence coding for the desired
protein is inserted and ligated into a suitable plasmid. Once formed, the expression
vector is introduced into a suitable host cell, which then expresses the vector(s) to
yield the desired protein.
Expression of any of the recombinant proteins of the invention as mentioned
herein can be effected in eukaryotic cells (e.g. yeasts, insect or mammalian cells) or
prokaryotic cells, using the appropriate expression vectors. Any method known in the
art can be employed.
For example the DNA molecules coding for the proteins obtained by any of the
above methods are inserted into appropriately constructed expression vectors by
techniques well known in the art (see Sambrook et al, 1989). Double stranded cDNA
is linked to plasmid vectors by homopolymeric tailing or by restriction linking involving
the use of synthetic DNA linkers or blunt-ended ligation techniques: DNA ligases are
used to ligate the DNA molecules and undesirable joining is avoided by treatment
with alkaline phosphatase.
In order to be capable of expressing the desired protein, an expression vector
should comprise also specific nucleotide sequences containing transcriptional and
translational regulatory information linked to the DNA coding the desired protein in
such a way as to permit gene expression and production of the protein. First in order
for the gene to be transcribed, it must be preceded by a promoter recognizable by
RNA polymerase, to which the polymerase binds and thus initiates the transcription
process. There are a variety of such promoters in use, which work with different
efficiencies (strong and weak promoters).
For eukaryotic hosts, different transcriptional and translational regulatory
sequences may be employed, depending on the nature of the host They may be
derived form viral sources, such as adenovirus, bovine papilloma virus, Simian virus or
the like, where the regulatory signals are associated with a particular gene which has a
high level of expression. Examples are the TK promoter of the Herpes virus, the SV40
early promoter, the yeast ga!4 gene promoter, etc. Transcriptional initiation regulatory
signals may be selected which allow for repression and activation, so that expression
of the genes can be modulated.
The ONA molecule comprising the nucleotide sequence coding for the hybrid
protein of the invention is inserted into vector(s), having the operably linked
transcriptional and translations! regulatory signals, which is capable of integrating the
desired gene sequences into the host cell. The cells which have been stably
transformed by the introduced DNA can be selected by also introducing one or more
markers which allow for selection of host cells which contain the expression vector.
The marker may also provide for phototrophy to a auxotropic host, biocide resistance,
e.g. antibiotics, or heavy metals such as copper, or the like. The selectable marker
gene can either be directly linked to the DNA gene sequences to be expressed, or
introduced into the same cell by co-transfection. Additional elements may also be
needed for optimal synthesis of proteins of the invention.
Factors of importance in selecting a particular plasmid or viral vector include:
the ease with which recipient cells, that contain the vector may be recognized and
selected form those recipient cells which do not contain the vector; the number of
copies of the vector which are desired In a particular host; and whether it is desirable
to be able to "shuttle" the vector between host cells of different species.
Once the vector(s) or DNA sequence containing the constructs) has been
prepared for expression the DNA constructs) mat be introduced into an appropriate
host cell by any of a variety of suitable means: transformation, transfection,
conjugation, protoplast fusion, electroporation, calcium phosphate-precipitation, direct
microinjection, etc.
Host ceils may be either prokaryotic or eukaryotic. Preferred are eukaryotic
hosts, e.g. mammalian cells, such as human, monkey, mouse, and Chinese hamster
ovary (CHO) cells, because they provide post-translational modifications to protein
molecules, including correct folding or glycosylation at correct sites. Also yeast cells
can carry out post-translational peptide modifications including glycosylation. A
number of recombinant DNA strategies exist which utilize strong promoter sequences
and high copy number of plasmids which can be utilized for production of the desired
proteins in yeast. Yeast recognizes leader sequences on cloned mammalian gene
products and secretes peptides bearing leader sequences (i.e., pre-peptides).
After the introduction of the vector(s), the host cells are grown in a selective
medium, which selects for the growth of vector-containing cells. Expression of the
cloned gene sequence(s) results in the production of the desired proteins.
Purification of the recombinant proteins so obtained is carried out according to
the method of the invention.
A very detailed embodiment of the present invention will be presented in the
following part of this specification and is schematically summarized in Figure 1.
ABBREVIATIONS
TNF
TBP
IDA
Cu-ChelateFF
Q-SEPH. FF
SP-SEPH.FF
Butyl-SEPH FF
IEC
ACN
CBB
DMA
EtOH
HIC
IEF
IEMA
IFMA
IPC
KD
LOQ
OD
PI
RP-HPLC
SOS-PAGE or SDS
SE-HPLC
SMW
SS
Tris
Tumor Necrosis Factor
TNF Binding Protein
Iminodiacetic acid
Copper-Chelate Fast Flow
Q-Sepharose Fast Row
SP-Sepharose Fast Flow
Butyl-Sepharose Fast Flow
Ion Exchange Chromatography
Acetonitrile
Comassie Brilliant Blue
Deoxyribonucleic Acid
Ethanol
Hydrophobic Interaction Chromatography
Iso Electric Focusing
Immuno-EnzymoMetric Assay
Immuno Fluorimetric Assay
In Process Control
Kilo Dalon
Limit of Quantitation
Optical Density
Isoelectric Point
Reverse Phase High Performance Liquid Chromatography
Sodium Dodecyl Sulphate Poly Acrylammide Gel
Electrophoresis
Size Exclusion High Performance Liquid Chromatography
Molecular weight standards
Sodium Sulphate
Tris(hydroxymethyl)aminomethane
toBV
Bed Volume
DESCRIPTION OF THE FIGURE
Figure 1: this figure shows a flow chart of the process used for the purification of r -
hTBP-1. From the capture step up to the achievement of the r-hTBP-1 bulk material 8
steps are performed, the most critical of which being the capture step. Each of the
steps is well described and detailed in the following Examples.
EXAMPLES
Materials
Equipment
Chromatographic column XK26/20 (2.6x20cm) Pharmacia
Chromatographic column XK50/20 (5x20cm) Pharmacia
Peristaltic pump Miniplus 2 Gilson
Peristaltic pump P-1 Pharmacia
Chart recorder 2210 Pharmacia
UV detector Uvicord 2158 Pharmacia
On line pH-conductivity monitor Biosepra
Low Pressure Chromatographic system FPLC Pharmacia
HPLC analytical system Merck
Ruorimetric detector mod. 9070 Varian
Refrigerated box MCF1500 " Angelantoni
U.V Spectrophotometer UV1204 Shimadzu
Ultrafiltration system mod. Minitan Millipore
Minitan plates 4/K Millipore
Stirred cell mod. 8400 Amicon
Stirred cell mod. 8050 Amicon
Ultrafiltration membrane type YM10 Amicon
Ultrafiltration membrane type YM10 Amicon
Resins and columns
SP Sepharose FF
Q Sepharose FF
Butyl Sepharose FF
Chelating Sepharose FF
Pharmacia
Pharmacia
Pharmacia
Pharmacia
SP Sepharose Big Beads Pharmacia
Phenyl Sepharose 6 FF (high sub) Pharmacia
CM Sepharose FF Pharmacia
DEAE Sepharose FF Pharmacia
DEAE-HyperD Biosepra
Supelcosil LC-308 0.46x5 Supelco
Aquapore RP-300 Brownlee Applied Biosystem
TSK-G2000SWxt 0.78x30 TOSO-HAAS
Mono -Q HR 5/5 Pharmacia
Chemicals
Tris{hydroxymethyl)-amino methane (Tris) Merck
Sodium chloride Merck
Ortho-phosphoric acid 85% Merck
Sodium hydroxide (pellets) Merck
Di-sodium hydrogen phosphate Merck
Sodium dihydrogen phosphate Merck
Ethanol absolute Merck
Acetonitrile (ACN) Merck
Trifluoroacetic acid (TFA) Baker
50% sodium hydroxide Baker
Sodium Sulphate Merck
Copper sulphate Merck
Zinc chloride Merck
Hydrochloric acid 37% Merck
1-propanol cod. 1024 Merck
Ethylenediaminotetracetic acid (EDTA) Merck
Ammonium sulphate
Merck
Bioiogicals
r-hTBP-1 crude harvest INTERPHARM LABORATORIES LTD.
McAb to TBP-1 clone 18 INTERPHARM LABORATORIES LTD.
Albumin standard cod. 2321 Pierce
The purification of r-hTBP-1 (Onereept) will now be described In detail.
STEP1 -CAPTURE STEP
Description of Buffers and Solutions
Resin charging buffer
32 g of copper sulfate are dissolved in 900 ml of purified water and after
dissolution the volume is brought to 1 liter.
Acidified water
0.5 ml of acetic acid is added to 1 liter of water.
Equilibration buffer
1.68 +/- 0.1 ml of 85% ortho-phosphoric acid and 11.68+7-0.1 g NaCI are
dissolved in 900 ml of purified water, the pH is adjusted to 6.8+7-0.1 with 50% NaOH
solution and the volume is brought to 1 liter.
Wash solution
1 liter of purified water is used as washing solution.
Elution bufferf a range of oH 2.8 to 3.2 has been tested)
6.75+/-0.5 ml of 85% ortho-phosphoric acid and 5.84+7-0.1 g NaCI are
dissolved in 900 ml of purified water, the pH is adjusted to 3+7-0.1 with 50% NaOH
solution and the volume is brought to 1 liter. The resulting conductivity is 15+7-1 mS.
Regeneration buffer
18.61+7-0.1 g EDTA and 58.4+7-1 g NaCI are dissolved in 900 mlof purified
water and the volume is brought to 1 liter.
Sanitation solution
40 g NaOH are dissolved in 900 ml of purified water and the volume is brought
to 1 liter.
Storage solution
20% ethanol or 0.01 M NaOH are used as storage solution.
Column Preparation
8+/-1 ml of Chelating Sepharase Fast Flow (Amersham Biosciences) is coupled
with iminodiacetic acid resin and packed into the chromatographic column so that the
bed height is 4+1-0.5 cm. The packed column is washed with 10 BV of acidified water
and then loaded with 2 BV of 0.2 M copper sulphate pH 4-4.5. Following the
manufacturer's Instructions a solution 2-3 mM of sodium acetate pH 4-4.5 is used to
facilitate the dissolution of copper sulphate and to avoid precipitation at neutral pH. The
resin is then washed with 10 BV of acidified water.
Procedure
Crude harvest containing r-hTBP-1 (recombinantTNF-binding protein-1), stored
at 4°C, is brought to room temperature; pH is adjusted to 6.8by dropwise addition of
85% ortho-phosphoric acid and conductivity is brought to 21+/-1 mS by addition of solid
NaCI (crude harvest can also be applied after a preliminary concentration phase of
ultrafiltration to remove medium components that could negatively affect the interaction
of r-hTBP-1 with copper).
The column prepared as described above is first equilibrated by flushing with
15-20 BV of equilibration buffer and then loaded with the crude harvest of r-hTBP-1 by
operating at room temperature (22+/-3"C) and at a linear flow rate of 200
ml/sqcm/hour.
The column is first washed with equilibration buffer until the UV signal reaches
the baseline and then is washed with 12-15 BV of water and the column effluent is
discarded.
Elution is carried out with the elution buffer and collection of eluate is started
when a UV signal is detected. The elution of r-hTBP-1 is accomplished with 5-6 BV of
elution buffer. The effluent containing semi-purified r-hTBP-1 is collected and stored at
-20°C.
The column is regenerated with 3 BV of regeneration buffer and the column
effluent is discarded. Thereafter, the column is sanitized wit 5 BV of sanitization
solution.
For storage, the column is washed with 5 BV of storage solution and stored in it.
The purity data after this step are summarized in TABLE 1 below.
Performance of the capture step (comparison with Zn2* IMAC)
The capture step was originally carried out on a Zn2*-chelate IMAC column.
However, the loading capacity of the capture step for crude r-hTBP-1 was considered
too low (250-300 meg r-hTBP-1 or 40 column volumes of crude harvest/ml of resin). By
replacing zinc with copper, as charging metal, a significant increase in the loading
capacity has been obtained. During this Cu2* IMAC capture step, the r-hTBP-1 is
bound to the resin, most of the contaminant proteins are eluted in the unbound fraction
and semipurified r-hTBP-1 is obtained in the elution with a purify level suitable for the
following steps.
By the selected conditions, the required improvement in the binding capacity
has been achieved together with some other advantages. The most relevant results
relative to the present invention are summan'sed below.
The capture step of r-hTBP-1, performed by the metal-chelate chromatography,
shows the following characteristics:
1. Concentration: 25-30 fold concentration of r-hTBP-1, in comparison with the crude
harvest (see Table 1).
2. Purification: The step is effective in the reduction of the contaminants, as shown in
Table 1.
3. Scaleabilftv. The method is suitable for scale up and manufacturing scale;
4. Productivity. The recovery of the step is satisfactory as shown in Table 2.
Furthermore the step is very fast, reproducible and easy to be carried out. The
resin can be reused after the appropriate sanitization and recharging.
Furthermore, the main advantages of the use of Cu2*" over Zn^can be
summarised as follows:
• Higher loading capacity: 1ml of Cu-resin binds 1-1.2 mg of r-hTBP-1 against 0.25-
0.5 mg/ml of Zn-resin;
• Improvement of the purity level of material after capture step from 30-35% obtained
by the Zn-resin to 40-50% of Cu-resin as shown in Table 2 (quantitative RP-HPLC).
• Reduction of the number of washes step from 3 of Zn-resin to 1 Cu-resin with a
reduction of working time and buffer consumption.
TABLE 1: Capture on Cu-chelate r-hTBP-1 - Recovery data by IEMA
RUN
RUN1
RUN 2
RUN 3
Sample
Start
Unbound
Wash
Elution
Start
Unbound
Wash
Elution
Start
Unbound
Wash
Elution
Volume
1200
1300
98
45
1100
1200
88
38
1200
1300
88
41
meg/ml
8.5
1.0
1.4
234
8.2
0.9
1.2
214
8.2
1.6
1.6
200
Total mg
10.2
1.3
0.12
10.5
9.0
1.0
0.1
8.2
9.8
2.0
0.14
8.2
%
recoveryO

12.7
1.2
100

11
1.1
91

20
1.4
83.6
& calculated on the total amount of r-hTBP-1 loaded
STEP 2 - ION EXCHANGE CHROMATOGRAPHY ON SP SEPHAROSE FF
Description Of Buffers And Solutions
Equilibration buffer
1.68 ml of 85% ortho-phosphoric acid and 17.53 g of NaCI area added to 900
ml of water with stirring. pH is adjusted to 3.0 +/-0.1 with 50% NaOH and the volume is
adjusted to 1 liter.
Wash buffer
0.68 ml of 85% ortho-phosphoric acid is added to 900 ml of water, with stirring.
pH is adjusted to 4.0 +/-0.1 with 50% NaOH and the volume is adjusted to 1 liter.
^ifc
Elution buffer
3.37 ml of 85% orto- phosphoric acid and 17.53 g of NaCI are added to 900 ml
of water, with stirring. pH is adjusted to 4.0 ± 0.1 with 50% NaOH and the volume is
adjusted to 1 liter.
Regeneration buffer
3.37 ml of 85% orb-phosphoric acid and 116.8 g of NaCI are added to 900 ml
of water, with stirring. pH is adjusted to 6.0+0.1 with 50% NaOH and the volume is
adjusted to 1 liter.
Sanitization solution
20 g of NaOH are dissolved in 900 ml of water, with stirring and the volume is
adjusted to 1 liter.
Storage solution
200 ml of absolute ethanol areadded to 800 ml of water under stirring.
Column Preparation
The column is packed with SP-Sepharose FF resin, following the
manufacturer's instructions, up to 6-6.5 cm bed height.
The column is sanitized by flushing 3 BV of NaOH 0.5M followed by 3BV of
water.
The column is equilibrated by flushing 4-5 BV of equilibration buffer. pH and
conductivity of column effluent are checked (pH 3.0 ±0.1, conductivity 29.5 ±0.5
mS/cm) and the column is eventually further equilibrated if the measured values are
not within the indicated ranges.
NB: Alternatively, the equilibration buffer can be replaced by 25mM Phosphate
buffer pH 2.8 +/-0.1 without NaCI; the wash buffer can be eliminated; the regeneration
buffer can be replaced by NaCI 1.5M; and the storage solution can be replaced by
10mM NaOH.
Procedure
All operations are performed at a temperature of 2-8°C and at a flow rate of 40-
50 ml/cm/hour.
•VT
Frozen r-hTBP-1 obtained from capture step elution is thawed either at room
temperature or 6 ±2°C. the pH is adjusted from 3.7 ± 0.2 to 3 ±0.1 by adding 85%
phosphoric acid and conductivity is adjusted from 14 ±3 mS/cm to 22±3 mS/cm by
adding solid sodium chloride and the solution is loaded on the column. After loading is
completed, the column is flushed with 3 BV of equilibration buffer, followed by 4 BV of
wash buffer. Alternatively, the washing with the wash buffer can be eliminated (see the
NB above).
Then elution with elution buffer is started. r-hTBP-1 starts to elute after 180-220
ml. This first part is, discarded and the following 3.5 BV which represent semipurified rhTBP-
1 are collected. The eluted fraction is sampled (5 x 0.5 ml) for IPC and stored at
6 ±2eC for not more than 3 days.
After elution is completed, the column is flushed with about 3 BV of
regeneration buffer. The fraction (1x1 ml) is sampled and discarded it.
For storage, the column is flushed with 3 BV of EtOH 20% (or, alternatively with
10mM NaOH) and stored at W-2°C.
Results of seven experiments of this step are in the following TABLE 2:
TABLE 2: Performance of the cation exchange chromatoaraDhv step -
RUN
CS R-HTBP-1/015 RUNS
CS R-HTBP-1/015 RUN6
CS R-HTBP-1/015 RUN7
CS R-HTBP-1/015 RUNS
CSR-HTBP-1/015RUN9
CS R-HTBP-1/015 RUN10
CS R-HTBP-1/015 RUN11
Start SP
total mg
436
435
454
419
576
579
382
r-hTBP-1
recovery
95.8%
95.4%
93.4%
93.0%
97.6%
98.7%
102%
The following Table 3 shows the performance of the combination of the steps IMAC
and SP-Sepharose FF.
TABLE 3 - Purity of r-hTBP-1 obtained from different sources
Upstream Process
Serum
Serum Free
Purity of post IMAC
58%-62%
57%-77%
Purity of post SP
82%-100%
81%-98%
Source of the data
GMP Runs BS01-
BS05
GMP Runs MS01-
MS05
STEP 3 - SP ELUATE ULTRAFiLTRATION
Procedure
All operations are performed at room temperature (23 ±3°C).
The ultrafilter stored in NaOH is washed with water until pH 7.0 ±0.5. The
ultrafilter assembled with membrane is loaded with the r-hTBP-1 solution. The solution
is concentrated up to 50 ml. The retentate fraction is diluted with about 200 ml of water
and concentrated again to 50 ml. The washing step described above is repeated three
more times.
The conductivity of the permeate is checked: if it is following step.
If the conductivity value is >0.5 mS/cm repeat once more the present washing
step.
200 ml of 50 mM Tris (at pH 9.0+0.1 and conductivity 0.55+0.1 mS/cm) are
added to the retentate fraction and concentrated again up to 50 ml of solution.
The operation described above is repeated three times, and, if needed,
continued until the pH and conductivity of the permeate fraction is 9.0 +0.2 and 0.55
±0.1 mS/cm respectively.
The retentate fraction is collected and the ultrafiter is washed with three 100 ml
aliquots of 50 mM Tris (at pH 9.0 ±0.1 and conductivity 0.6 +0.1 mS/cm) adding the
washing fractions.
The ultrafilter is washed and sanitized with 0.1 M NaOH (or, alternatively, 0.5 M
NaOH) by recycling for not more than 30 minutes. The ultrafilter is rinsed with water
until permeate pH is 7.0±0.5. The ultrafilter is then stored in 0.01 M or, alternatively,
0.05 M NaOH at 23+3°C.
STEP 4 - ION EXCHANGE CHROMATOGRAPHY ON Q-SEPHAROSE FF
Buffers And Solutions
Equilibration buffer: 50mM Tris pH 9.0±0.1, conductivity 0.55+0.1 mS/cm
Elution buffer: 250mM Tris pH 9.0±0.1,50 mM NaCI conductivity 7.2+0.5 mS/cm
Regeneration buffer: 250mM Tris pH 6.010.1,2 M NaCI or, alternatively, 1.5M NaCI
Sanitization solution: 0.5M NaOH.
Storage solution: 20% Ethanol or 10 mM NaOH.
Procedure
All operations are performed in the following conditions:
Temperature: 2-8°C or, alternatively, room temperature; Linear flow rate: 80-90
ml/cm2/hour
The pH of r-hTBP-1 post Ultrafiltration is checked and, if it is different from pH
9.0 ±0.1, it is adjusted with 1M Tris or 3M HCI. The conductivity is also checked.
The column is packed with Q-Sepharose FF resin, following the manufacturer's
instructions, up to 13 cm bed height.
The Q-Sepharose column is then sanitized by flushing 3 BV of NaOH 0.5 M
followed by 6 BV of water. Then the column is flushed with 4 BV of elution buffer and
equilibrated with 7-8 BV of equilibration buffer, pH and conductivity of column effluent is
checked (pH 9.0 +0.2, conductivity 0.55 ±0.1 mS/cm). The equilibration of the column
is eventually continuously performed if the measured values are not within the
indicated ranges.
The column is then loaded with ultrafiltered r-hTBP-1 prepared as above. After
loading is completed, the column is flushed with 3 BV of equilibration buffer.
Elution is started with the elution buffer. Pure h-hTBP-1 starts to elute after
1BV; collection of r-hTBP-1 is started after the first BV according to the
chromatographic profile; then elution is completed after 5-6 BV.
The column is flushed with 3 BV of regeneration buffer, sample (1 x 1ml) and
then discarded. The column is again flushed with 3 BV of 0.5 M NaOH, rinsed with
water until the pH of the effluent is between 7 and 8. Finally the column is flushed with
3 BV of EtOH 20 % and stored at 2 -8°C.
30-
STEP 5 - NANOFILTRATION ON DV 50 PALL
The stainless steel support is installed in the disc-holder and the DV50 filter (47
mm diameter) is placed on the support. Pall Ultipor® VF Grade DV50 is a filter cartridge
which is normally used for viruses removal. A few drops of water are added on the top
of the disk. The appropriate seals are installed and the disc-holder is closed tightly. The
system is filled with 50 ml of Q elution buffer, closed and connected to the Nitrogen
source.
At the beginning of the flushing the nitrogen is opened at an initial pressure of
0.5 bar and then the vent valve located on the disc-holder is opened in order to purge
the system.
As soon as the first drop of liquid appears at the vent valve on the disc -holder, it
is closed tightly and the nitrogen is opened to the right pressure, 3.0-3.5 bar.
The membrane is then flushed with all the 50 ml of buffer, in order to assure
that the membrane iswet and to eliminate air, if present, between the sheets of the
membrane and perform the integrity test on the filter.
The system is filled with material coming from the previous step and operated
as follows: at the beginning of the filtration the nitrogen is opened at an initial pressure
of 0.5 bar and then the vent valve located on the disc-holder is openend in order to
purge the system .As soon as the first drop of solution starts to appears, the vent valve
of the disc-holder is closed and the nitrogen opened to a pressure of 1.5-2.5 bar.
The nitrogen pressure is kept at 1.5-2.5 bar and then the solution is filtered.
The filtered solution is collected in a container and at the end of the filtration,
the nitrogen source is closed and the vent valve is opened to eliminate excess of
nitrogen.
At the end of the filtration, the system is washed with 5-10 ml of the elution
buffer of the previous step, at the same working pressure of 1.5-2.5 bar.
The washing solution is collected in the same container of the filtered solution
and sampled for IPC.
STEP 6 - HYDROPHOBIC INTERACTION ON BUTYL SEPHAROSE FF
Buffers And Solutions
Equilibration buffer: 200 mM Tris-HCI pH 7.5+0.1, 1 M Na2SO4 conductivity 90±5
mS/cm
Button buffer: 200 mM Tris-HCI pH 7.5+0.1,0.7 M Na2SO4, conductivity 75±5 mS/cm
Regeneration solution:Purified water
Sanitization solution: 1M NaOH
Storage solution :20% ethanol or 10 mM NaOH
Procedure
All operations are performed at a temperature of 23 ±3°C and at a linear flow
rate of 80-90 ml/cm/hour. Solid Na?SO4 is added to Q-Sepharose eluate, post 100 KD
Ultrafiltration under stirring, up to 1M. After that the dissolution of the salt is completed,
the pH is adjusted to 7.5 ±0.1 with 3M HCI. The column is then flushed with 3 BV of
NaOH 1M followed by 4BV of purified water.
The column is again flushed with 5-6 BV of equilibration buffer. The pH and
conductivity of effluent (pH 7.510.2, conductivity 90 ±5 mS/cm) are checked and the
column equilibration is continuously performed, if measured values are out of indicated
ranges.
The solution prepared as above is loaded on to the column and, after loading is
completed, the column is washed with 3 BV of equilibration buffer. Wash with
equilibration buffer is continued.
After 2-3 BV of wash, proteins start to elute. This fraction contains r-hTBP-1,
10-12% about of total, contaminated by cell culture contaminants. This wash is
prolonged until protein elution reaches the plateau giving a broad peak (about 2 BV).
Then elution is started with elution buffer. The first 1 -2 BV are pooled with the
washing sample, since it contains a small amount of contaminants and immediately
thereafter collection of r-hTBP-1 is started.
Purified r-hTBP-1 elutes immediately after the contaminated material and
elution is continued for another 2.5-3 BV. The collection is stopped when the UV
absorbance reaches the 0.5 % of max. After collection of r-hTBP-1, the fraction
(5x0.5ml) is sampled and stored it at 2-8°C for not more than 3 days.
The column is flushed with 3 BV of purified water and the fraction collected.
The column is sanitized with 3 BV of 1 M NaOH and rinsed with water until the
pH of effluent is between 7 and 8.
Then the column is flushed again with three column volume of ethanol 20 %
and stored at room temperature for not more than 2 weeks.
STEP 7 -10 KD ULTRAFILTRATION
The stirred cell type 8400, assembled with the membrane, is loaded with the
Butyl-Sepharose eluate. The solution is concentrated to about 25 ml, under nitrogen
pressure of 3 bars. The retentate fraction is diluted with about 100 ml of water and
concentrated again to 25 ml. The washing step described above is repeated three
further times. The conductivity of the permeate is checked: if it is following step can be started. If the conductivity value is >0.3 mS/cm, the washing step
should be repeated.
100 ml of bulk buffer is added to the retentate fraction and concentrated again
up to 25 ml of solution. This operation is repeated three times, and, if needed, until the
pH and conductivity of the permeate fraction is 7.1 ±0.2 and 5.8 ±0.2 mS/cm,
respectively.
The retentate fraction is discarded and loaded on the smaller ultrafiltration
stirred cell type 8050, assembled with the membrane. The retentate is concentrated to
minimum volume (about 3-5 ml). The retentate fraction is collected and the ultrafilter
with bulk is washed by adding the washing fractions to the concentrated r-hTBP-1. The
final volume is adjusted in order to obtain a final concentration of about 20 -30 mg/ml by
OD 280 nm(e= 0.71).
The ultrafilters are washed and sanitized with 0.2 M NaOH by recycling for at
least 30 minutes. The ultrafilters are then rinsed with water unti I the permeate pH is 7.0
±0.5. The ultrafilters are then stored in NaOH 0.01 M at 6 ±2°C.
STEP 8 - MICROFILTRATION
A disposable syringe is connected to a 0.22 \i filter, filled with the r-hTBP-1
concentrated solution, filtered and washed twice with 1 ml of bulk buffer by pooling the
washes with the filtered bulk. The resulting solution is sampled for analytical tests (15
x 0.2 ml) and stored at -20°C.
Results are satisfactory under the quantitation and purity points of view as
shown by the following tables (Tables 4 to 6) reflecting the results of an adequate
number of replications of this process (RUN).
Most critical to the process of this invention is the initial chromatography step on
Cu*2 chelate column. Moreover, it is also important the combination of the SP
Sepharose chromatography at an acid pH with a following Q Sepharose at a basic pH.
In these conditions, strikingly good results have been obtained by subjecting a crude
harvest from CHO production of r-hTBP-1 (Onercept). The capture step in particular
has been shown to be able to 25-30 fold concentrate r-hTBP-1, to effectively reduce
contaminants, to have a satisfactory recovery of the protein and to be scaleable for
industrial manufacturing.
Even more surprising is the fact that outstanding purity data are obtained both
when the starting material is a crude supernatant from serum-containing cell culture
and when it comes from serum-free cultures, as will be shown below.
TABLE 4 - Step and cumulative recovery data
SP-Sepharose Q-Sepharose Butyl Bulk
RUN
RUN1
RUN 2
RUN 3
RUN 4
RUNS
RUN 6
RUN 7
Step
Recovery
(%)
95.8
95.4
93.4
93.0
97.6
98.7
102
Step
Recovery
(%)
98.2
90.4
94.3
93.3
95.7
89.2
90
Step
Recovery
(%)
84.8
86.2
90.4
90.5
80.9
87.3
81.6
Step
Recovery
(%)
102
104
106
102
108
101
100
Overall
Yield*
73.8
79.5
82.3
89
83.3
80.1
75.2
TABLE 5 - Bulk ouantitation data
Bulk
batch
RUN1
RUN 2
RUNS
RUN 4
RUNS
RUN 6
RUNT
Volume
(ml)
16
13.7
14
13.5
16
16
13
O.D.
(mg/ml)
20.3
25
26
28.6
29
29
20.5
Quantitative
RP-HPLC
(mg/ml)
20.2
25.3
26.7
27.7
30.2
29
20.4
Bradford
(mg/ml)
22.7
26.2
26.1
30.2
28.7
27.0
19.6
Biol. activity
(lU/mg) 0
25985
27350
23834
23003
23803
27339
27752
0 mg of r-hTBP-1 obtained by OD
TABLE 6-Bulk Purity data
Bulk
batch
RUN1
RUN 2
RUNS
RUN 4
RUNS
RUN 6
RUN 7
Purity by
SE-HPLC
(%)
99.7
99.9
99.9
99.7
99.7
99.7
99.9
Cell Culure
Proteins
(ppm ) 0
3
n.d.
Fluorimetric
RP-HPLC
(ppm) 0
DNA
(pg/mg)
$
17
10
11
12
11.5
n.d.
n.d.
SDS-PAGE
Silver
Stained
(ppm) #-©
By applying analogous process steps to the other TNF receptor, r-hTBP-2, similar
quantitation and purity data are obtained.
ANALYTICAL PROTOCOLS
1 Quantitative RP-HPLC- Working procedure
The following method has been used to quantitate the r-hTBP-1 in all
purification samples. It employes a C8 column with acqueous TFA and n -propanol; a
good resolution between r-hTBP-1 and cell culture contaminants is obtained. The rhTBP-
1 can be resolved in one or two peaks depending on the column batch. The
procedure is described here below.
1.1 Equipment and materials and method
- Analytical HPLC System (Merck or equivalent)
- Dynamic mixer (Merck or equivalent)
- Column: SUPELCOSIL LC-308 0 0.46x5 cm - cod 5-8851 - Supelco
- Eluent A: 0.1 % aqueous TFA
- Eluent B: 0.1 % TFA in water / n -propanol 50:50
- Eluent C: Acetonitrile
- Temperature: 23±3°C
- UV Detection: 214 nm
- Injection time: 62 minutes
- Injection volume: 10-100 n-l
- Standard: BTC10 ,1.53 mg/ml by OD 280 nm (e= 0.71) injected at 10 and 20 jil
- Gradient:
Step
1
2
3
4
5
6
7
8
9
10
Flow rate
ml/min
0.7
0.7
0.7
0.7
0.7
1
1
1
1
0.7
Time
(minutes)
0
5
14
27
35
35.1
40
40.1
50
61
%A
90
70
65
0
0
0
0
90
90
90
%B
10
30
35
100
100
20
20
10
10
10
%C
0
0
0
0
0
80
80
0
0
0
1.2 Calculation
The amount of r-hTBP-1 in each purification sample has been obtained as
follows:
• calculate the response factor (RF) for the standard (BTC10) according to the
formula:
„, TBPlmcg/ml
Kf =
TBP1 peak area
Multiply the r-hTBP-1 peak area of each sample by the RF of the standard
obtaining the concentration of the sample in meg/ml as shown:
TBP1 meg / ml = TBP1 peak area x RF standard
Please note that:
• The BTC10 used as standard has been chosen on the basis of availability;
• The retention time of r-hTBP-1 peak can shift at each new buffer preparation (1 -3
min);
• Concentrated sample has to be diluted in eluant A.
2, Fluorimetric RP-HPLC -Working procedure
Based on previous experiences with other recombinant proteins a RP-HPLC
analysis with a fluorimetric detection has been set up to estimate the purity level of the
residual cell culture contaminants both in r-hTBP-1 bulks and in in process samples
since no immunochemical method was available when the purification study started.
This method was found useful to monitor the removal of cell culture
contaminants in the last purification step, i.e. Butyl Sepharose chromatography and it
was determinant in the selection of the operative conditions of the above step, since it
could be used to analyze the in-process samples and no special materials and/or
apparatus are required. The RP-HPLC is fast (run time 62 minutes) and gives results
comparable to the immunoassay when this test became available. Since a standard for
contaminants was not yet. available, a BSA solution from Pierce was used as standard
to estimate the contamination level in the samples. As the quantitative RP -HPLC, this
test gives a good resolution between r-hTBP-1 and BSA area.
jr\-
2.1 Equipment. materials and method
-Analytical HPLC System (Merck or equivalent)
- Dynamic mixer
- Fluorimetric detector ( Varian or equivalent)
- Column: Aquapore RP-300,7n, Brownlee, 0 0.46x22 cm - cod 0711 -0059,
Applied Biosystem
- Eluent A: 0.1% aqueous TFA
- Eluent B: 0.1 % TFA in Acetonitrile
-Temperature: 23±3"C
- X excitation: 220 nm
- A. emission: 330 nm
- Injection volume: 10 -100 |il
- Injection time: 62 minutes
- Standard: BSA (Pierce) 2 mg/ml diluted 1:100,10 and 20 jil injected;
- Control: BTC10,1.53 mg/ml by OD 280 nm (e= 0.71). as it is 200 nl injected;
- r-hTBP-1 samples: 1-5 mg/ml by OD 280 nm (e= 0.71).
- Gradient:
Step
1
2
3
4
5
6
7
8
9
Flow rate
ml/min
2
2
2
2
2
2
2
2
2
Time
(minutes)
0
5
15
25
35
36
45
46
61
%A
70
70
65
50
50
0
0
70
70
%B
30
30
35
50
50
100
100
30
30
2.2 Calculation
The amount of contaminants in each Butyl purification sample is obtained as
follows:
• calculate the response factor (RF) for the standard (BSA) according to th e formula:
„„ BSA meg injected
KJf —
BSA peak area
Multiply the contaminants peaks area of each sample by the RF of the standard
and by 1000 obtaining the amount of contaminants in the sample injected in ng.
Dividing this value by the amount of r-hTBP-1 injected the contamination in parts per
million is obtained, according to the formula:
. . ^_ contaminants peak areas xRFBSA x 1000
ppm contaminants =
TBPlmg injected
Please note that:
• Test sample has to be diluted in eluant A.
• The contamination of the control sample ranges between 190 and 240 ppm.
3. Analysis and characterization of the r-hTPB-1 Bulk
The analytical methods described hereinafter have been set up and used to
characterize the r-hTBP-1 bulk originated by the new purification procedure.
3.1 SE-HPLC
This method was developed with the aim to quantitate the amount of dimers
and aggregates in the final bulk. The method can discriminate between r-hTBP-1
monomer and its dimer and/or aggregates. This has been proved by testing some r -
hTBP-1 samples after UV treatment, a method widely known to generate aggregate
forms of molecules. Briefly the method is carried out as follows:
3.1.1 Equipment. materials and method
Equipment: Analytical HPLC System
Column: TSK G2000 SWxt cod. 08021 (TosoHaas)
Mobile phase: 0.1M Sodium phosphate pH 6.7,0.1M sodium sulfate
Temperature: 23±3°C
UV detection: 214 nm
Injection volume: 10-100 nl corresponding to 20-30 meg of r-hTBP-1 (by OD)
Injection time: 30 minutes
Standard: BTC10,1.53 mg/ml by OD 280 nm (e= 0.71) 10-20 |j.l injected
r-hTBP-1 bulk: diluted to 1-2 mg/ml by OD 280 nm (e= 0.71) 10-20 |il injected
The purity of the sample is expressed as % of purity of r-hTBP-1 peak / total area ratio.
3.2 IE-HPLC
This method was developed to evaluate the isoform composition in the final
bulk with the aim to replace the chromatofocussing technique generally used for the
above purpose. In contrast to the chromatofocussing, the (EC analysis is more
advantageous because is faster than the above, requires less material (150-200 meg
instead of 1 -2-mg), employes common buffers and does not require pretreatment of the
test sample. Since r-hTBP-1 is a glycoprotein, as a substance of that nature, it is
characterized by different isoforms having each one a different isoelectric point that
determines a different behaviour when tested by an ion exchange analysis. 12 different
peaks, each one corresponding to a glycosilation variant, are obtained. By the present
method all the isoforms of the r-hTBP-1 have been isolated and fully characterized.
Briefly the method is carried out as follows:
3.2.1 Equipment. materials and method
Analytical inert HPLC System
Column: Mono Q HR 5/5
Buffer A: 40 mM Tris/HCI pH 8.5
Buffer B: 40 mM Tris/HCI pH 8.5, 0.3 M NaCI
Gradient:
Step
1
2
3
4
5
6
7
8
Flow rate
ml/min
1
1
1
1
1
1
1
1
Time
(minutes)
0
10
30
40
41
51
52
70
%A
100
90
75
65
0
0
100
100
%B
0
10
25
35
100
100
0
0
Flow rate:
Temperature:
UV detection:
Injection amount
Injection time:
Sample:
1 ml/min
23+3°C
220 nm
10-15 mcl corresponding to 150-200 meg of r-hTBP-1(by OD)
70 minutes
r-hTBP-1 bulk and reference diluted 1:2 with purified water
4. Quantitation of r-hTBP-1 by OD
The concentration of the r-hTBP-1 bulks produced in accordance with the
present invention was determined by optical density at 280 nm using the molar
extinction coefficient (e) calculated in house on r-hTBP-1 bulk produced during the
initial phase of the purification of r-hTBP-1. Three representative r-hTBP1 bulks
produced with the new purification process have been used, obtaining e=0.776. This
new extinction coefficient will be used for the scale up and production phases. Since
the concentration of the bulks is in the range of 20-30 mg/ml, it is necessary dilute the
material to 1 mg/ml with bulk buffer (40 mM PBS pH 7.1 ±0.2, 10 mM NaCI), prior to
test the absorbance at 280 nm.
5. Protein determination by Bradford
The Bradford method was used to quantitate total proteins in the r-hTBP-1 bulk
(see Bradford, MM. Analytical Biochemistry 72:248-254, 1976 and Stoscheck, CM..
Methods in Enzymology 182:50-69,1990). The standard used in this test is BSA.
6. In vitro Bioassay
The bioactivity of r-hTBP-1 consists in its capacity to bind TNFa. This test was used to
assay both the in process samples and bulks.



PROCESS FOR THE PURIFICATION OF TNF-BINDING PROTEINS USING IMAC
FIELD OF THE INVENTION
This Invention relates to the field of polypeptide purification. More specifically, It
relates to the purification of Tumor Necrosis Factor-binding
BACKGROUND OF THE INVENTION
Tumor necrosis factor-alpha (TNFA), a potent cytokine, elicits a broad spectrum
of biologic responses which are mediated by binding to a cell surface receptor. The
receptor for human TNF-alpha may bejsqlated from a human jilstiocyjicilymphorna,cell __
Jne (see Stauberet al., J. Blo^Chem., 263, 19098-104, 1988).
Using monoclonal antibodies, another group obtained evidence for 2 distinct
TNF-binding proteins, both of which bind TNF-alpha and TNF-beta specifically and with
high affinity (see Brockhaus et al., Proc. Nat. Acad. Sci. 87: 7380-7384, 1990) and
isolated the cDNA for one of the receptors. They found that it encodes a protein of 455
amino acids that Is divided into an extracellular domain of 171 residues and a
cytoplasmic domain of 221 residues.
Later on another group (see Aggarwal et al. Nature 318: 665-667, 1985)
showed that tumor necrosis factors alpha and beta initiate their effects on cell function
by binding to common cell surface receptors. The TNF alpha and TNF beta receptors
have different sizes and are expressed differentially in different cell lines (see
Engelmann etal., J. Biol. Chem. 265: 1531-1536, 1990).
TNF alpha Receptor I, referred to by some as TNFR55, is the smaller of .the 2
receptors. cDNAs for both receptors have been cloned and their nucleic acid sequence
determined (see Loetscher et al., Cell 61: 351-359, 1990; Nophar et al., EMBO J. 9:
3269-3278, 1990; Schall et al., Cell 61: 361-370, 1990 and Smith et al., Science 248:
1019-1023, 1990).
Whereas the extracellular domains of the 2 receptors are strikingly similar in
structure, their intracellular domains appear to be unrelated. Southern blotting of
human genomic DNA, using the cDNAs of the 2 receptors as probes, indicated that
each is encoded by a single gene.
Several approaches have been attempted to purify polypeptides.
Chromatography is one of the means most commonly used, including affinity
chromatography in which the substance to be purified is first adsorbed to a bed or
column of a suitable support on which agents having affinity for the given substance
are immobilized to capture it and let the remaining components of the raw mixture pass
unbound. The adsorbed substance is then eluted by changing such environmental
conditions as pH and/or salt concentration to give a partially or totally purified molecule.
In the field of affinity chromatography, the technique known as IMAC
(Immobilized Metal Affinity Chromatography) has been described as particularly
efficient in certain cases (see the review article by Arnold, Biotechnology, Vol. 9, page
151-156, Feb. 1991). IMAC is described as a powerful technique in the purification of
poiypeptides having functional groups that participate in metal binding, such as the side
chains of Glu, Tyr, Cys, His, Asp and Met, as well as the amino-termlnal amide
nitrogens and backbone carbonyl oxygens.
Although the technique is powerful, it does not always have the required
specificity. For example, it has been ascertained that adsorption on a Cu2* containing
chromatographfc column is excellent for poiypeptides containing one or preferably
more histidines, but it was also observed that even in the absence of the three amino -
acids considered to be most important for adsorption, namely histidine, tryptophan and
cysteine, adsorption of protein may occur, thus impairing the specificity of the
purification step.
The adsorption efficiency, although generally satisfactory for purification
purposes, may not be optimal particularly when the polypeptide to be purified is a
glycoprotein. In this case very often the carbohydrate chains may conceal the sites
active for the binding to the metal cheiate and reduce the affinity for the
chromatographic column in the adsorption step.
DESCRIPTION OF THE INVENTION
It has now been found that TNF-binding proteins can be efficiently purified by
means of a process including an Immobilized Metal Affinity Chromatography (IMAC)
step using copper as metal. Optimal conditions of pH and salinity for this step are a pH
of 2.8 to 3.2, preferably pH 3, and a salinity of 14 to 16 rnS, preferably of 15 mS.
According to the present invention TNF-binding proteins" means any protein
which has an affinity for TNF-alpha or TNF-beta and/or a protein which comprises in
the extra-cellular, soluble fragment of a protein belonging to the TNF receptors family,
or a fragment thereof
Some examples of members of the TNF receptor family are the following:
> Tumor Necrosis Factor Receptor 1 (TNFR1), also called Tumor Necrosis Factor
Receptor Superfamily, Member 1A (TNFRSF1A), or Tumor Necrosis Factoralpha
Receptor (TNFAR) or TNFR 55-KD or TNFR 60-KD (see description at
OMIM*191190 http:7Avww.ncbi.nlm.nih.gov/entrez/query.fcgi7dbsOMIM)
> Tumor Necrosis Factor Receptor 2 (TNFR2), also called Tumor Necrosis Factor
Receptor Subfamily , Member 1B (TNFRSF1B) , or Tumor Necrosis Factor -
beta Receptor (TNFBR) or TNFR 75-KD or TNFR 80-KD (see description at
OMIM*191191);
> OX40 Antigen (0X40), also called Tumor Necrosis Factor Receptor
Superfamily, Member 4 (TNFRSF4), or Tax-Transcriptionaily Activated
Glycoprotein 1 Receptor ( TXGP1L) or Lymphoid Activation Antigen ACT35
(ACT35) or CD134 (see description at OMIM*600315);
> C040L Receptor (CD40), also called Tumor Necrosis Factor Receptor
Superfamily, Member 5 (TNFRSF5) or B-cell surface antigen CD40, or GDw40
or Bp50 (see description at Swiss-Prat Entry No. P25942);
>• FASL Receptor (FAS), also called Tumor Necrosis Factor Receptor
Superfamily, Member 6 (TNFRSF6), or Apoptosis-Mediating Surface Antigen
FAS or Apo-1 Antigen or CD95 (see description at Swiss-Prot Entry No.
P25445);
> Decoy Receptor 3 (DcR3), also called Tumor Necrosis Factor Receptor
Superfamily, Member 6B (TNFRSF6B) or Decoy Receptor for FAS Ligand or
M68 (see description at Swiss-Prot Entry No. O95407);
> CD27 Atnigen (CD27), also called Tumor Necrosis Factor Receptor
Superfamily, Member 7 (TNFRSF7) or T-Cell Activation Antigen S152 (S152)
(see description at OMIM*602250);
> Lymphoid Activation Antigen CD30 (CD 30), also called Tumor Necrosis Factor
Receptor Superfamily, Member 8 orNFRSF8) (see description at
OMIM*153243)
> Induced By Lymphocyte Activation (ILA), also called Tumor Necrosis Factor
Receptor Superfamily, Member 9 (TNFRSF9) or CD137 (see description at
OMIM*602250);
> Death Receptor 4 (DR4), also called Tumor Necrosis Factor Receptor
Superfamily, Member 10A (TNFRSF10A), or TNF-Related Apoptosls-lnducing
Ligand Receptor 1 (TRAILR1) or APO2 (see description at OMIM*603611);
> Death Receptor 5 (DR5), also called Tumor Necrosis Factor Receptor
Superfamily, Member 10B (TNFRSF10B), or TNF-Related Apoptosis-lnducing
Ligand Receptor 2 (TRAILR2) or Killer/DR5 or TRICK2 (see description at
OMIM '603612);
> Decoy Receptor 1 (DCR1), also called Tumor Necrosis Factor Receptor
Superfamily, Member 10C (TNFRSF10C), or TNF-Related Apoptosis-lnducing
Ligand Receptor 3 (TRAILR3), or TRAIL Receptor Without An Intracellufar
Domain (TRID) (see description at OMIM*603613);
> Decoy Receptor 2 (DCR2), also called Tumor Necrosis Factor Receptor
Superfamily, Member 10D (TNFRSF10D) or TNF-Related Apoptosis-lnducing
Ligand Receptor 4 (TRAILR4) or TRAIL Receptor With A Truncated Death
Domain (TRUNDD) (see description at OMIM*603014);
> Receptor Activator of NF-KAPPA-B (RANK), also called Tumor Necrosis Factor
Receptor Superfamily, Member 11A (TNFRSF11A), or Osteoclast
Differentiation Factor Receptor (ODFR) or PDB2 or TRANCER (see description
atOMIM*603499);
> Osteoprotegerin (OPG), also called Tumor Necrosis Factor Receptor
Superfamily, Member 11B (TNFRSF11B) or Osteoclastogenesis Inhibitory
Factor (OCIF) (see description at OMIM*602643);
> Death Receptor 3 (DR3), also called Tumor Necrosis Factor Receptor
Superfamily, Member 12 (TNFRSF12), or APO3 or Lymphocyte-Associated
Receptor of Death (LARD) (see description at OMIM*603366);
> Transmembrane Activator And Caml Interactor (TACI), also called Tumor
Necrosis Factor Receptor Superfamily, Member 13B (TNFRSF13B) (see
description at OMIM*604907);
> BAFF Receptor (BAFFR), also called Tumor Necrosis Factor Receptor
Superfamily, Member 13C (TNFRSF13C), or B Cell-Activating Factor Receptor
(see description at OMIM*606269);
> Herpesvirus Entry Mediator (HVEM), also called Tumor Necrosis Factor
Receptor Superfamily, Member 14 (TNFRSF14), or H erpesvirus Entry Mediator
A (HVEA) orTR2 (see description at OMIM*602746);
^ s
> Nerve Growth Factor Receptor (NGFR), also called Tumor Necrosis Factor
Receptor Superfamily, Member 16 (TNFRSF16) or p75(NTR) (see description
atOMIM*162010);
> B-Cell Maturation Factor (BCMA), also called Tumor Necrosis Factor Receptor
Superfamily, Member 17 (TNFRSF17) or BCM (see description at
OMIM*109545);
> Glucocorticoid-lnduced TNFR-Related Gene (GITR), also called Tumor
Necrosis Factor Receptor Superfamily. Member 18 (TNFRSF18), or Activationfnducible
TNFR Family Member (AITR) (see description at OMIM*603905);
> TRADE, also called Tumor Necrosis Factor Receptor Superfamily, Member 19
(TNFRSF19), or Toxicity and JNK Inducer or TROY or TAJ (see description at
Swiss-Prot Entry No. Q9NS68);
> X-linked Ectodyplasin-A2 Receptor (XEDAR), also called EDA^A2 receptor (see
description at Swiss-Prot Entry No. Q9HAV5) and
> DEATH RECEPTOR 6 (DR6), also called Tumor Necrosis Factor Receptor
Superfamily, Member 21 (TNFRSF21) (see description at OMIM*605732).
According to a preferred embodiment of the invention the TNF-binding protein is
selected from recombinant h-TBP-1 (recombinant, extracellular, soluble fragment of
human TNF Receptor-1, comprising the amino acid sequence corresponding to the 20-
180 amino acids fragment of Nophar et al.) and recombinant h-TBP-2 (recombinant,
extracellular, soluble fragment of TNF Receptor-2, comprising the amino acid
sequence corresponding to 23-257 of Smith et al.). Most preferably, it is recombinant
hTBP-1 (r-hTBP-1). For all the other proteins the soluble, extracellular domain is
indicated in the corresponding Swiss-Prot entry.
According to another preferred embodiment of the invention, the purification
process of the TNF-binding protein includes the "IMAC" step as the "capture step" and
further comprise the following steps, as "intermediate steps": ion exchange
chromatography (IEC) at an acidic pH (preferably between 3 and 4) followed by ion
exchange chromatography at a basic pH (preferably between 8 and 10}.
According to a further preferred embodiment of the invention the purification
process of the TNF-binding protein further comprises, as "polishing step" hydrophobic
interaction chromatography (HIC).
More preferably each of the above mentioned chromatography step is followed
by an ultrafiltration.
"Capture step" according to the present invention means the step during which
the recombinant TNF-binding protein is isolated and concentrated from the crude
harvest supernatant of the recombinant host cells culture containing it. A high yield at
the end of this initial step has a big impact on the overa II performance and yield of the
process. According to the present invention, the capture step carried out on Cu -Chelate
FF and, preferably, with an elutlon at pH 3.0 yields a product having a purity > 40% and
a recovery > 80%.
"Intermediate steps" are the steps during which most of the bulk impurities,
such as other proteins and nucleic acids, endotoxins and viruses are removed.
"Polishing steps" are the steps during which any remining trace impurities or
closely related substances are removed, inorderto obtain a high purity protein.
"Ion exchange chromatography" (IEC) is capable of separating molecules that
have only slight differences in charge to give a very high resolution separation.
Fractions are collected in purified, concentrated form. The separation is based on the
reversible interaction between a charged molecule and an oppositely charged
chromatographic medium. Molecules bind as they are loaded onto the column.
Conditions are then altered so that the bound substances are eluted differentially.
Elution is usually performed by changes in salt concentration or pH. Changes are made
stepwise or with a continuous gradient Q Sepharose or SP Sepharose columns are
commonly used in ion exchange chromatography. "Q Sepharose" is a quaternary
ammonium strong anion exchanger (charged groups: - N *(CH3)3), whereas "SP
Sepharose" is a sulfopropyl strong cation exchanger (charged groups: - SO3")
Hydrophobic interaction chromatography (HIC) is a versatile method for the
purification and separation of biomolecules based on differences in their surface
hydrophobicity. Proteins and peptides usually sequester hydrophobic amino acids in
domains away from the surface of the molecule. However, many biomolecules
considered hydrophilic have sufficient hydrophobic groups exposed to allow interaction
with hydrophobic ligands attached to the chromatographic matrix. Compared to
reversed phase chromatography, the density of the ligand on the matrix is much lower.
This feature promotes the high selectivity of HIC, while allowing m ild elution conditions
to help preserve biological activity. "Butyl Sepharose" column is preferably used
according to the present invention in the hydrophobic interaction chromatography (HIC)
step. On this column the n-butyl group is used as hydrophobic ligand.
According to the present invention, the TNF-binding proteins are produced by
means of recombinant DNA technology in eukaryotic, preferably mammalian, cells. The
recombinant process for producing them is here below reported for completeness.
In the initial step of the process the DNA sequence coding for the desired
protein is inserted and ligated into a suitable plasmid. Once formed, the expression
vector is introduced into a suitable host cell, which then expresses the vector(s) to
yield the desired protein.
Expression of any of the recombinant proteins of the invention as mentioned
herein can be effected in eukaryotic cells (e.g. yeasts, insect or mammalian cells) or
prokaryotic cells, using the appropriate expression vectors. Any method known in the
art can be employed.
For example the DNA molecules coding for the proteins obtained by any of the
above methods are inserted into appropriately constructed expression vectors by
techniques well known in the art (see Sambrook et al, 1989). Double stranded cDNA
is linked to plasmid vectors by homopolymeric tailing or by restriction linking involving
the use of synthetic DNA linkers or blunt-ended ligation techniques: DNA ligases are
used to ligate the DNA molecules and undesirable joining is avoided by treatment
with alkaline phosphatase.
In order to be capable of expressing the desired protein, an expression vector
should comprise also specific nucleotide sequences containing transcriptional and
translational regulatory information linked to the DNA coding the desired protein in
such a way as to permit gene expression and production of the protein. First in order
for the gene to be transcribed, it must be preceded by a promoter recognizable by
RNA polymerase, to which the polymerase binds and thus initiates the transcription
process. There are a variety of such promoters in use, which work with different
efficiencies (strong and weak promoters).
For eukaryotic hosts, different transcriptional and translational regulatory
sequences may be employed, depending on the nature of the host They may be
derived form viral sources, such as adenovirus, bovine papilloma virus, Simian virus or
the like, where the regulatory signals are associated with a particular gene which has a
high level of expression. Examples are the TK promoter of the Herpes virus, the SV40
early promoter, the yeast ga!4 gene promoter, etc. Transcriptional initiation regulatory
signals may be selected which allow for repression and activation, so that expression
of the genes can be modulated.
The ONA molecule comprising the nucleotide sequence coding for the hybrid
protein of the invention is inserted into vector(s), having the operably linked
transcriptional and translations! regulatory signals, which is capable of integrating the
desired gene sequences into the host cell. The cells which have been stably
transformed by the introduced DNA can be selected by also introducing one or more
markers which allow for selection of host cells which contain the expression vector.
The marker may also provide for phototrophy to a auxotropic host, biocide resistance,
e.g. antibiotics, or heavy metals such as copper, or the like. The selectable marker
gene can either be directly linked to the DNA gene sequences to be expressed, or
introduced into the same cell by co-transfection. Additional elements may also be
needed for optimal synthesis of proteins of the invention.
Factors of importance in selecting a particular plasmid or viral vector include:
the ease with which recipient cells, that contain the vector may be recognized and
selected form those recipient cells which do not contain the vector; the number of
copies of the vector which are desired In a particular host; and whether it is desirable
to be able to "shuttle" the vector between host cells of different species.
Once the vector(s) or DNA sequence containing the constructs) has been
prepared for expression the DNA constructs) mat be introduced into an appropriate
host cell by any of a variety of suitable means: transformation, transfection,
conjugation, protoplast fusion, electroporation, calcium phosphate-precipitation, direct
microinjection, etc.
Host ceils may be either prokaryotic or eukaryotic. Preferred are eukaryotic
hosts, e.g. mammalian cells, such as human, monkey, mouse, and Chinese hamster
ovary (CHO) cells, because they provide post-translational modifications to protein
molecules, including correct folding or glycosylation at correct sites. Also yeast cells
can carry out post-translational peptide modifications including glycosylation. A
number of recombinant DNA strategies exist which utilize strong promoter sequences
and high copy number of plasmids which can be utilized for production of the desired
proteins in yeast. Yeast recognizes leader sequences on cloned mammalian gene
products and secretes peptides bearing leader sequences (i.e., pre-peptides).
After the introduction of the vector(s), the host cells are grown in a selective
medium, which selects for the growth of vector-containing cells. Expression of the
cloned gene sequence(s) results in the production of the desired proteins.
Purification of the recombinant proteins so obtained is carried out according to
the method of the invention.
A very detailed embodiment of the present invention will be presented in the
following part of this specification and is schematically summarized in Figure 1.
ABBREVIATIONS
TNF
TBP
IDA
Cu-ChelateFF
Q-SEPH. FF
SP-SEPH.FF
Butyl-SEPH FF
IEC
ACN
CBB
DMA
EtOH
HIC
IEF
IEMA
IFMA
IPC
KD
LOQ
OD
PI
RP-HPLC
SOS-PAGE or SDS
SE-HPLC
SMW
SS
Tris
Tumor Necrosis Factor
TNF Binding Protein
Iminodiacetic acid
Copper-Chelate Fast Flow
Q-Sepharose Fast Row
SP-Sepharose Fast Flow
Butyl-Sepharose Fast Flow
Ion Exchange Chromatography
Acetonitrile
Comassie Brilliant Blue
Deoxyribonucleic Acid
Ethanol
Hydrophobic Interaction Chromatography
Iso Electric Focusing
Immuno-EnzymoMetric Assay
Immuno Fluorimetric Assay
In Process Control
Kilo Dalon
Limit of Quantitation
Optical Density
Isoelectric Point
Reverse Phase High Performance Liquid Chromatography
Sodium Dodecyl Sulphate Poly Acrylammide Gel
Electrophoresis
Size Exclusion High Performance Liquid Chromatography
Molecular weight standards
Sodium Sulphate
Tris(hydroxymethyl)aminomethane
toBV
Bed Volume
DESCRIPTION OF THE FIGURE
Figure 1: this figure shows a flow chart of the process used for the purification of r -
hTBP-1. From the capture step up to the achievement of the r-hTBP-1 bulk material 8
steps are performed, the most critical of which being the capture step. Each of the
steps is well described and detailed in the following Examples.
EXAMPLES
Materials
Equipment
Chromatographic column XK26/20 (2.6x20cm) Pharmacia
Chromatographic column XK50/20 (5x20cm) Pharmacia
Peristaltic pump Miniplus 2 Gilson
Peristaltic pump P-1 Pharmacia
Chart recorder 2210 Pharmacia
UV detector Uvicord 2158 Pharmacia
On line pH-conductivity monitor Biosepra
Low Pressure Chromatographic system FPLC Pharmacia
HPLC analytical system Merck
Ruorimetric detector mod. 9070 Varian
Refrigerated box MCF1500 " Angelantoni
U.V Spectrophotometer UV1204 Shimadzu
Ultrafiltration system mod. Minitan Millipore
Minitan plates 4/K Millipore
Stirred cell mod. 8400 Amicon
Stirred cell mod. 8050 Amicon
Ultrafiltration membrane type YM10 Amicon
Ultrafiltration membrane type YM10 Amicon
Resins and columns
SP Sepharose FF
Q Sepharose FF
Butyl Sepharose FF
Chelating Sepharose FF
Pharmacia
Pharmacia
Pharmacia
Pharmacia
SP Sepharose Big Beads Pharmacia
Phenyl Sepharose 6 FF (high sub) Pharmacia
CM Sepharose FF Pharmacia
DEAE Sepharose FF Pharmacia
DEAE-HyperD Biosepra
Supelcosil LC-308 0.46x5 Supelco
Aquapore RP-300 Brownlee Applied Biosystem
TSK-G2000SWxt 0.78x30 TOSO-HAAS
Mono -Q HR 5/5 Pharmacia
Chemicals
Tris{hydroxymethyl)-amino methane (Tris) Merck
Sodium chloride Merck
Ortho-phosphoric acid 85% Merck
Sodium hydroxide (pellets) Merck
Di-sodium hydrogen phosphate Merck
Sodium dihydrogen phosphate Merck
Ethanol absolute Merck
Acetonitrile (ACN) Merck
Trifluoroacetic acid (TFA) Baker
50% sodium hydroxide Baker
Sodium Sulphate Merck
Copper sulphate Merck
Zinc chloride Merck
Hydrochloric acid 37% Merck
1-propanol cod. 1024 Merck
Ethylenediaminotetracetic acid (EDTA) Merck
Ammonium sulphate
Merck
Bioiogicals
r-hTBP-1 crude harvest INTERPHARM LABORATORIES LTD.
McAb to TBP-1 clone 18 INTERPHARM LABORATORIES LTD.
Albumin standard cod. 2321 Pierce
The purification of r-hTBP-1 (Onereept) will now be described In detail.
STEP1 -CAPTURE STEP
Description of Buffers and Solutions
Resin charging buffer
32 g of copper sulfate are dissolved in 900 ml of purified water and after
dissolution the volume is brought to 1 liter.
Acidified water
0.5 ml of acetic acid is added to 1 liter of water.
Equilibration buffer
1.68 +/- 0.1 ml of 85% ortho-phosphoric acid and 11.68+7-0.1 g NaCI are
dissolved in 900 ml of purified water, the pH is adjusted to 6.8+7-0.1 with 50% NaOH
solution and the volume is brought to 1 liter.
Wash solution
1 liter of purified water is used as washing solution.
Elution bufferf a range of oH 2.8 to 3.2 has been tested)
6.75+/-0.5 ml of 85% ortho-phosphoric acid and 5.84+7-0.1 g NaCI are
dissolved in 900 ml of purified water, the pH is adjusted to 3+7-0.1 with 50% NaOH
solution and the volume is brought to 1 liter. The resulting conductivity is 15+7-1 mS.
Regeneration buffer
18.61+7-0.1 g EDTA and 58.4+7-1 g NaCI are dissolved in 900 mlof purified
water and the volume is brought to 1 liter.
Sanitation solution
40 g NaOH are dissolved in 900 ml of purified water and the volume is brought
to 1 liter.
Storage solution
20% ethanol or 0.01 M NaOH are used as storage solution.
Column Preparation
8+/-1 ml of Chelating Sepharase Fast Flow (Amersham Biosciences) is coupled
with iminodiacetic acid resin and packed into the chromatographic column so that the
bed height is 4+1-0.5 cm. The packed column is washed with 10 BV of acidified water
and then loaded with 2 BV of 0.2 M copper sulphate pH 4-4.5. Following the
manufacturer's Instructions a solution 2-3 mM of sodium acetate pH 4-4.5 is used to
facilitate the dissolution of copper sulphate and to avoid precipitation at neutral pH. The
resin is then washed with 10 BV of acidified water.
Procedure
Crude harvest containing r-hTBP-1 (recombinantTNF-binding protein-1), stored
at 4°C, is brought to room temperature; pH is adjusted to 6.8by dropwise addition of
85% ortho-phosphoric acid and conductivity is brought to 21+/-1 mS by addition of solid
NaCI (crude harvest can also be applied after a preliminary concentration phase of
ultrafiltration to remove medium components that could negatively affect the interaction
of r-hTBP-1 with copper).
The column prepared as described above is first equilibrated by flushing with
15-20 BV of equilibration buffer and then loaded with the crude harvest of r-hTBP-1 by
operating at room temperature (22+/-3"C) and at a linear flow rate of 200
ml/sqcm/hour.
The column is first washed with equilibration buffer until the UV signal reaches
the baseline and then is washed with 12-15 BV of water and the column effluent is
discarded.
Elution is carried out with the elution buffer and collection of eluate is started
when a UV signal is detected. The elution of r-hTBP-1 is accomplished with 5-6 BV of
elution buffer. The effluent containing semi-purified r-hTBP-1 is collected and stored at
-20°C.
The column is regenerated with 3 BV of regeneration buffer and the column
effluent is discarded. Thereafter, the column is sanitized wit 5 BV of sanitization
solution.
For storage, the column is washed with 5 BV of storage solution and stored in it.
The purity data after this step are summarized in TABLE 1 below.
Performance of the capture step (comparison with Zn2* IMAC)
The capture step was originally carried out on a Zn2*-chelate IMAC column.
However, the loading capacity of the capture step for crude r-hTBP-1 was considered
too low (250-300 meg r-hTBP-1 or 40 column volumes of crude harvest/ml of resin). By
replacing zinc with copper, as charging metal, a significant increase in the loading
capacity has been obtained. During this Cu2* IMAC capture step, the r-hTBP-1 is
bound to the resin, most of the contaminant proteins are eluted in the unbound fraction
and semipurified r-hTBP-1 is obtained in the elution with a purify level suitable for the
following steps.
By the selected conditions, the required improvement in the binding capacity
has been achieved together with some other advantages. The most relevant results
relative to the present invention are summan'sed below.
The capture step of r-hTBP-1, performed by the metal-chelate chromatography,
shows the following characteristics:
1. Concentration: 25-30 fold concentration of r-hTBP-1, in comparison with the crude
harvest (see Table 1).
2. Purification: The step is effective in the reduction of the contaminants, as shown in
Table 1.
3. Scaleabilftv. The method is suitable for scale up and manufacturing scale;
4. Productivity. The recovery of the step is satisfactory as shown in Table 2.
Furthermore the step is very fast, reproducible and easy to be carried out. The
resin can be reused after the appropriate sanitization and recharging.
Furthermore, the main advantages of the use of Cu2*" over Zn^can be
summarised as follows:
• Higher loading capacity: 1ml of Cu-resin binds 1-1.2 mg of r-hTBP-1 against 0.25-
0.5 mg/ml of Zn-resin;
• Improvement of the purity level of material after capture step from 30-35% obtained
by the Zn-resin to 40-50% of Cu-resin as shown in Table 2 (quantitative RP-HPLC).
• Reduction of the number of washes step from 3 of Zn-resin to 1 Cu-resin with a
reduction of working time and buffer consumption.
TABLE 1: Capture on Cu-chelate r-hTBP-1 - Recovery data by IEMA
RUN
RUN1
RUN 2
RUN 3
Sample
Start
Unbound
Wash
Elution
Start
Unbound
Wash
Elution
Start
Unbound
Wash
Elution
Volume
1200
1300
98
45
1100
1200
88
38
1200
1300
88
41
meg/ml
8.5
1.0
1.4
234
8.2
0.9
1.2
214
8.2
1.6
1.6
200
Total mg
10.2
1.3
0.12
10.5
9.0
1.0
0.1
8.2
9.8
2.0
0.14
8.2
%
recoveryO

12.7
1.2
100

11
1.1
91

20
1.4
83.6
& calculated on the total amount of r-hTBP-1 loaded
STEP 2 - ION EXCHANGE CHROMATOGRAPHY ON SP SEPHAROSE FF
Description Of Buffers And Solutions
Equilibration buffer
1.68 ml of 85% ortho-phosphoric acid and 17.53 g of NaCI area added to 900
ml of water with stirring. pH is adjusted to 3.0 +/-0.1 with 50% NaOH and the volume is
adjusted to 1 liter.
Wash buffer
0.68 ml of 85% ortho-phosphoric acid is added to 900 ml of water, with stirring.
pH is adjusted to 4.0 +/-0.1 with 50% NaOH and the volume is adjusted to 1 liter.
^ifc
Elution buffer
3.37 ml of 85% orto- phosphoric acid and 17.53 g of NaCI are added to 900 ml
of water, with stirring. pH is adjusted to 4.0 ± 0.1 with 50% NaOH and the volume is
adjusted to 1 liter.
Regeneration buffer
3.37 ml of 85% orb-phosphoric acid and 116.8 g of NaCI are added to 900 ml
of water, with stirring. pH is adjusted to 6.0+0.1 with 50% NaOH and the volume is
adjusted to 1 liter.
Sanitization solution
20 g of NaOH are dissolved in 900 ml of water, with stirring and the volume is
adjusted to 1 liter.
Storage solution
200 ml of absolute ethanol areadded to 800 ml of water under stirring.
Column Preparation
The column is packed with SP-Sepharose FF resin, following the
manufacturer's instructions, up to 6-6.5 cm bed height.
The column is sanitized by flushing 3 BV of NaOH 0.5M followed by 3BV of
water.
The column is equilibrated by flushing 4-5 BV of equilibration buffer. pH and
conductivity of column effluent are checked (pH 3.0 ±0.1, conductivity 29.5 ±0.5
mS/cm) and the column is eventually further equilibrated if the measured values are
not within the indicated ranges.
NB: Alternatively, the equilibration buffer can be replaced by 25mM Phosphate
buffer pH 2.8 +/-0.1 without NaCI; the wash buffer can be eliminated; the regeneration
buffer can be replaced by NaCI 1.5M; and the storage solution can be replaced by
10mM NaOH.
Procedure
All operations are performed at a temperature of 2-8°C and at a flow rate of 40-
50 ml/cm/hour.
•VT
Frozen r-hTBP-1 obtained from capture step elution is thawed either at room
temperature or 6 ±2°C. the pH is adjusted from 3.7 ± 0.2 to 3 ±0.1 by adding 85%
phosphoric acid and conductivity is adjusted from 14 ±3 mS/cm to 22±3 mS/cm by
adding solid sodium chloride and the solution is loaded on the column. After loading is
completed, the column is flushed with 3 BV of equilibration buffer, followed by 4 BV of
wash buffer. Alternatively, the washing with the wash buffer can be eliminated (see the
NB above).
Then elution with elution buffer is started. r-hTBP-1 starts to elute after 180-220
ml. This first part is, discarded and the following 3.5 BV which represent semipurified rhTBP-
1 are collected. The eluted fraction is sampled (5 x 0.5 ml) for IPC and stored at
6 ±2eC for not more than 3 days.
After elution is completed, the column is flushed with about 3 BV of
regeneration buffer. The fraction (1x1 ml) is sampled and discarded it.
For storage, the column is flushed with 3 BV of EtOH 20% (or, alternatively with
10mM NaOH) and stored at W-2°C.
Results of seven experiments of this step are in the following TABLE 2:
TABLE 2: Performance of the cation exchange chromatoaraDhv step -
RUN
CS R-HTBP-1/015 RUNS
CS R-HTBP-1/015 RUN6
CS R-HTBP-1/015 RUN7
CS R-HTBP-1/015 RUNS
CSR-HTBP-1/015RUN9
CS R-HTBP-1/015 RUN10
CS R-HTBP-1/015 RUN11
Start SP
total mg
436
435
454
419
576
579
382
r-hTBP-1
recovery
95.8%
95.4%
93.4%
93.0%
97.6%
98.7%
102%
The following Table 3 shows the performance of the combination of the steps IMAC
and SP-Sepharose FF.
TABLE 3 - Purity of r-hTBP-1 obtained from different sources
Upstream Process
Serum
Serum Free
Purity of post IMAC
58%-62%
57%-77%
Purity of post SP
82%-100%
81%-98%
Source of the data
GMP Runs BS01-
BS05
GMP Runs MS01-
MS05
STEP 3 - SP ELUATE ULTRAFiLTRATION
Procedure
All operations are performed at room temperature (23 ±3°C).
The ultrafilter stored in NaOH is washed with water until pH 7.0 ±0.5. The
ultrafilter assembled with membrane is loaded with the r-hTBP-1 solution. The solution
is concentrated up to 50 ml. The retentate fraction is diluted with about 200 ml of water
and concentrated again to 50 ml. The washing step described above is repeated three
more times.
The conductivity of the permeate is checked: if it is following step.
If the conductivity value is >0.5 mS/cm repeat once more the present washing
step.
200 ml of 50 mM Tris (at pH 9.0+0.1 and conductivity 0.55+0.1 mS/cm) are
added to the retentate fraction and concentrated again up to 50 ml of solution.
The operation described above is repeated three times, and, if needed,
continued until the pH and conductivity of the permeate fraction is 9.0 +0.2 and 0.55
±0.1 mS/cm respectively.
The retentate fraction is collected and the ultrafiter is washed with three 100 ml
aliquots of 50 mM Tris (at pH 9.0 ±0.1 and conductivity 0.6 +0.1 mS/cm) adding the
washing fractions.
The ultrafilter is washed and sanitized with 0.1 M NaOH (or, alternatively, 0.5 M
NaOH) by recycling for not more than 30 minutes. The ultrafilter is rinsed with water
until permeate pH is 7.0±0.5. The ultrafilter is then stored in 0.01 M or, alternatively,
0.05 M NaOH at 23+3°C.
STEP 4 - ION EXCHANGE CHROMATOGRAPHY ON Q-SEPHAROSE FF
Buffers And Solutions
Equilibration buffer: 50mM Tris pH 9.0±0.1, conductivity 0.55+0.1 mS/cm
Elution buffer: 250mM Tris pH 9.0±0.1,50 mM NaCI conductivity 7.2+0.5 mS/cm
Regeneration buffer: 250mM Tris pH 6.010.1,2 M NaCI or, alternatively, 1.5M NaCI
Sanitization solution: 0.5M NaOH.
Storage solution: 20% Ethanol or 10 mM NaOH.
Procedure
All operations are performed in the following conditions:
Temperature: 2-8°C or, alternatively, room temperature; Linear flow rate: 80-90
ml/cm2/hour
The pH of r-hTBP-1 post Ultrafiltration is checked and, if it is different from pH
9.0 ±0.1, it is adjusted with 1M Tris or 3M HCI. The conductivity is also checked.
The column is packed with Q-Sepharose FF resin, following the manufacturer's
instructions, up to 13 cm bed height.
The Q-Sepharose column is then sanitized by flushing 3 BV of NaOH 0.5 M
followed by 6 BV of water. Then the column is flushed with 4 BV of elution buffer and
equilibrated with 7-8 BV of equilibration buffer, pH and conductivity of column effluent is
checked (pH 9.0 +0.2, conductivity 0.55 ±0.1 mS/cm). The equilibration of the column
is eventually continuously performed if the measured values are not within the
indicated ranges.
The column is then loaded with ultrafiltered r-hTBP-1 prepared as above. After
loading is completed, the column is flushed with 3 BV of equilibration buffer.
Elution is started with the elution buffer. Pure h-hTBP-1 starts to elute after
1BV; collection of r-hTBP-1 is started after the first BV according to the
chromatographic profile; then elution is completed after 5-6 BV.
The column is flushed with 3 BV of regeneration buffer, sample (1 x 1ml) and
then discarded. The column is again flushed with 3 BV of 0.5 M NaOH, rinsed with
water until the pH of the effluent is between 7 and 8. Finally the column is flushed with
3 BV of EtOH 20 % and stored at 2 -8°C.
30-
STEP 5 - NANOFILTRATION ON DV 50 PALL
The stainless steel support is installed in the disc-holder and the DV50 filter (47
mm diameter) is placed on the support. Pall Ultipor® VF Grade DV50 is a filter cartridge
which is normally used for viruses removal. A few drops of water are added on the top
of the disk. The appropriate seals are installed and the disc-holder is closed tightly. The
system is filled with 50 ml of Q elution buffer, closed and connected to the Nitrogen
source.
At the beginning of the flushing the nitrogen is opened at an initial pressure of
0.5 bar and then the vent valve located on the disc-holder is opened in order to purge
the system.
As soon as the first drop of liquid appears at the vent valve on the disc -holder, it
is closed tightly and the nitrogen is opened to the right pressure, 3.0-3.5 bar.
The membrane is then flushed with all the 50 ml of buffer, in order to assure
that the membrane iswet and to eliminate air, if present, between the sheets of the
membrane and perform the integrity test on the filter.
The system is filled with material coming from the previous step and operated
as follows: at the beginning of the filtration the nitrogen is opened at an initial pressure
of 0.5 bar and then the vent valve located on the disc-holder is openend in order to
purge the system .As soon as the first drop of solution starts to appears, the vent valve
of the disc-holder is closed and the nitrogen opened to a pressure of 1.5-2.5 bar.
The nitrogen pressure is kept at 1.5-2.5 bar and then the solution is filtered.
The filtered solution is collected in a container and at the end of the filtration,
the nitrogen source is closed and the vent valve is opened to eliminate excess of
nitrogen.
At the end of the filtration, the system is washed with 5-10 ml of the elution
buffer of the previous step, at the same working pressure of 1.5-2.5 bar.
The washing solution is collected in the same container of the filtered solution
and sampled for IPC.
STEP 6 - HYDROPHOBIC INTERACTION ON BUTYL SEPHAROSE FF
Buffers And Solutions
Equilibration buffer: 200 mM Tris-HCI pH 7.5+0.1, 1 M Na2SO4 conductivity 90±5
mS/cm
Button buffer: 200 mM Tris-HCI pH 7.5+0.1,0.7 M Na2SO4, conductivity 75±5 mS/cm
Regeneration solution:Purified water
Sanitization solution: 1M NaOH
Storage solution :20% ethanol or 10 mM NaOH
Procedure
All operations are performed at a temperature of 23 ±3°C and at a linear flow
rate of 80-90 ml/cm/hour. Solid Na?SO4 is added to Q-Sepharose eluate, post 100 KD
Ultrafiltration under stirring, up to 1M. After that the dissolution of the salt is completed,
the pH is adjusted to 7.5 ±0.1 with 3M HCI. The column is then flushed with 3 BV of
NaOH 1M followed by 4BV of purified water.
The column is again flushed with 5-6 BV of equilibration buffer. The pH and
conductivity of effluent (pH 7.510.2, conductivity 90 ±5 mS/cm) are checked and the
column equilibration is continuously performed, if measured values are out of indicated
ranges.
The solution prepared as above is loaded on to the column and, after loading is
completed, the column is washed with 3 BV of equilibration buffer. Wash with
equilibration buffer is continued.
After 2-3 BV of wash, proteins start to elute. This fraction contains r-hTBP-1,
10-12% about of total, contaminated by cell culture contaminants. This wash is
prolonged until protein elution reaches the plateau giving a broad peak (about 2 BV).
Then elution is started with elution buffer. The first 1 -2 BV are pooled with the
washing sample, since it contains a small amount of contaminants and immediately
thereafter collection of r-hTBP-1 is started.
Purified r-hTBP-1 elutes immediately after the contaminated material and
elution is continued for another 2.5-3 BV. The collection is stopped when the UV
absorbance reaches the 0.5 % of max. After collection of r-hTBP-1, the fraction
(5x0.5ml) is sampled and stored it at 2-8°C for not more than 3 days.
The column is flushed with 3 BV of purified water and the fraction collected.
The column is sanitized with 3 BV of 1 M NaOH and rinsed with water until the
pH of effluent is between 7 and 8.
Then the column is flushed again with three column volume of ethanol 20 %
and stored at room temperature for not more than 2 weeks.
STEP 7 -10 KD ULTRAFILTRATION
The stirred cell type 8400, assembled with the membrane, is loaded with the
Butyl-Sepharose eluate. The solution is concentrated to about 25 ml, under nitrogen
pressure of 3 bars. The retentate fraction is diluted with about 100 ml of water and
concentrated again to 25 ml. The washing step described above is repeated three
further times. The conductivity of the permeate is checked: if it is following step can be started. If the conductivity value is >0.3 mS/cm, the washing step
should be repeated.
100 ml of bulk buffer is added to the retentate fraction and concentrated again
up to 25 ml of solution. This operation is repeated three times, and, if needed, until the
pH and conductivity of the permeate fraction is 7.1 ±0.2 and 5.8 ±0.2 mS/cm,
respectively.
The retentate fraction is discarded and loaded on the smaller ultrafiltration
stirred cell type 8050, assembled with the membrane. The retentate is concentrated to
minimum volume (about 3-5 ml). The retentate fraction is collected and the ultrafilter
with bulk is washed by adding the washing fractions to the concentrated r-hTBP-1. The
final volume is adjusted in order to obtain a final concentration of about 20 -30 mg/ml by
OD 280 nm(e= 0.71).
The ultrafilters are washed and sanitized with 0.2 M NaOH by recycling for at
least 30 minutes. The ultrafilters are then rinsed with water unti I the permeate pH is 7.0
±0.5. The ultrafilters are then stored in NaOH 0.01 M at 6 ±2°C.
STEP 8 - MICROFILTRATION
A disposable syringe is connected to a 0.22 \i filter, filled with the r-hTBP-1
concentrated solution, filtered and washed twice with 1 ml of bulk buffer by pooling the
washes with the filtered bulk. The resulting solution is sampled for analytical tests (15
x 0.2 ml) and stored at -20°C.
Results are satisfactory under the quantitation and purity points of view as
shown by the following tables (Tables 4 to 6) reflecting the results of an adequate
number of replications of this process (RUN).
Most critical to the process of this invention is the initial chromatography step on
Cu*2 chelate column. Moreover, it is also important the combination of the SP
Sepharose chromatography at an acid pH with a following Q Sepharose at a basic pH.
In these conditions, strikingly good results have been obtained by subjecting a crude
harvest from CHO production of r-hTBP-1 (Onercept). The capture step in particular
has been shown to be able to 25-30 fold concentrate r-hTBP-1, to effectively reduce
contaminants, to have a satisfactory recovery of the protein and to be scaleable for
industrial manufacturing.
Even more surprising is the fact that outstanding purity data are obtained both
when the starting material is a crude supernatant from serum-containing cell culture
and when it comes from serum-free cultures, as will be shown below.
TABLE 4 - Step and cumulative recovery data
SP-Sepharose Q-Sepharose Butyl Bulk
RUN
RUN1
RUN 2
RUN 3
RUN 4
RUNS
RUN 6
RUN 7
Step
Recovery
(%)
95.8
95.4
93.4
93.0
97.6
98.7
102
Step
Recovery
(%)
98.2
90.4
94.3
93.3
95.7
89.2
90
Step
Recovery
(%)
84.8
86.2
90.4
90.5
80.9
87.3
81.6
Step
Recovery
(%)
102
104
106
102
108
101
100
Overall
Yield*
73.8
79.5
82.3
89
83.3
80.1
75.2
TABLE 5 - Bulk ouantitation data
Bulk
batch
RUN1
RUN 2
RUNS
RUN 4
RUNS
RUN 6
RUNT
Volume
(ml)
16
13.7
14
13.5
16
16
13
O.D.
(mg/ml)
20.3
25
26
28.6
29
29
20.5
Quantitative
RP-HPLC
(mg/ml)
20.2
25.3
26.7
27.7
30.2
29
20.4
Bradford
(mg/ml)
22.7
26.2
26.1
30.2
28.7
27.0
19.6
Biol. activity
(lU/mg) 0
25985
27350
23834
23003
23803
27339
27752
0 mg of r-hTBP-1 obtained by OD
TABLE 6-Bulk Purity data
Bulk
batch
RUN1
RUN 2
RUNS
RUN 4
RUNS
RUN 6
RUN 7
Purity by
SE-HPLC
(%)
99.7
99.9
99.9
99.7
99.7
99.7
99.9
Cell Culure
Proteins
(ppm ) 0
3
n.d.
Fluorimetric
RP-HPLC
(ppm) 0
DNA
(pg/mg)
$
17
10
11
12
11.5
n.d.
n.d.
SDS-PAGE
Silver
Stained
(ppm) #-©
By applying analogous process steps to the other TNF receptor, r-hTBP-2, similar
quantitation and purity data are obtained.
ANALYTICAL PROTOCOLS
1 Quantitative RP-HPLC- Working procedure
The following method has been used to quantitate the r-hTBP-1 in all
purification samples. It employes a C8 column with acqueous TFA and n -propanol; a
good resolution between r-hTBP-1 and cell culture contaminants is obtained. The rhTBP-
1 can be resolved in one or two peaks depending on the column batch. The
procedure is described here below.
1.1 Equipment and materials and method
- Analytical HPLC System (Merck or equivalent)
- Dynamic mixer (Merck or equivalent)
- Column: SUPELCOSIL LC-308 0 0.46x5 cm - cod 5-8851 - Supelco
- Eluent A: 0.1 % aqueous TFA
- Eluent B: 0.1 % TFA in water / n -propanol 50:50
- Eluent C: Acetonitrile
- Temperature: 23±3°C
- UV Detection: 214 nm
- Injection time: 62 minutes
- Injection volume: 10-100 n-l
- Standard: BTC10 ,1.53 mg/ml by OD 280 nm (e= 0.71) injected at 10 and 20 jil
- Gradient:
Step
1
2
3
4
5
6
7
8
9
10
Flow rate
ml/min
0.7
0.7
0.7
0.7
0.7
1
1
1
1
0.7
Time
(minutes)
0
5
14
27
35
35.1
40
40.1
50
61
%A
90
70
65
0
0
0
0
90
90
90
%B
10
30
35
100
100
20
20
10
10
10
%C
0
0
0
0
0
80
80
0
0
0
1.2 Calculation
The amount of r-hTBP-1 in each purification sample has been obtained as
follows:
• calculate the response factor (RF) for the standard (BTC10) according to the
formula:
„, TBPlmcg/ml
Kf =
TBP1 peak area
Multiply the r-hTBP-1 peak area of each sample by the RF of the standard
obtaining the concentration of the sample in meg/ml as shown:
TBP1 meg / ml = TBP1 peak area x RF standard
Please note that:
• The BTC10 used as standard has been chosen on the basis of availability;
• The retention time of r-hTBP-1 peak can shift at each new buffer preparation (1 -3
min);
• Concentrated sample has to be diluted in eluant A.
2, Fluorimetric RP-HPLC -Working procedure
Based on previous experiences with other recombinant proteins a RP-HPLC
analysis with a fluorimetric detection has been set up to estimate the purity level of the
residual cell culture contaminants both in r-hTBP-1 bulks and in in process samples
since no immunochemical method was available when the purification study started.
This method was found useful to monitor the removal of cell culture
contaminants in the last purification step, i.e. Butyl Sepharose chromatography and it
was determinant in the selection of the operative conditions of the above step, since it
could be used to analyze the in-process samples and no special materials and/or
apparatus are required. The RP-HPLC is fast (run time 62 minutes) and gives results
comparable to the immunoassay when this test became available. Since a standard for
contaminants was not yet. available, a BSA solution from Pierce was used as standard
to estimate the contamination level in the samples. As the quantitative RP -HPLC, this
test gives a good resolution between r-hTBP-1 and BSA area.
jr\-
2.1 Equipment. materials and method
-Analytical HPLC System (Merck or equivalent)
- Dynamic mixer
- Fluorimetric detector ( Varian or equivalent)
- Column: Aquapore RP-300,7n, Brownlee, 0 0.46x22 cm - cod 0711 -0059,
Applied Biosystem
- Eluent A: 0.1% aqueous TFA
- Eluent B: 0.1 % TFA in Acetonitrile
-Temperature: 23±3"C
- X excitation: 220 nm
- A. emission: 330 nm
- Injection volume: 10 -100 |il
- Injection time: 62 minutes
- Standard: BSA (Pierce) 2 mg/ml diluted 1:100,10 and 20 jil injected;
- Control: BTC10,1.53 mg/ml by OD 280 nm (e= 0.71). as it is 200 nl injected;
- r-hTBP-1 samples: 1-5 mg/ml by OD 280 nm (e= 0.71).
- Gradient:
Step
1
2
3
4
5
6
7
8
9
Flow rate
ml/min
2
2
2
2
2
2
2
2
2
Time
(minutes)
0
5
15
25
35
36
45
46
61
%A
70
70
65
50
50
0
0
70
70
%B
30
30
35
50
50
100
100
30
30
2.2 Calculation
The amount of contaminants in each Butyl purification sample is obtained as
follows:
• calculate the response factor (RF) for the standard (BSA) according to th e formula:
„„ BSA meg injected
KJf —
BSA peak area
Multiply the contaminants peaks area of each sample by the RF of the standard
and by 1000 obtaining the amount of contaminants in the sample injected in ng.
Dividing this value by the amount of r-hTBP-1 injected the contamination in parts per
million is obtained, according to the formula:
. . ^_ contaminants peak areas xRFBSA x 1000
ppm contaminants =
TBPlmg injected
Please note that:
• Test sample has to be diluted in eluant A.
• The contamination of the control sample ranges between 190 and 240 ppm.
3. Analysis and characterization of the r-hTPB-1 Bulk
The analytical methods described hereinafter have been set up and used to
characterize the r-hTBP-1 bulk originated by the new purification procedure.
3.1 SE-HPLC
This method was developed with the aim to quantitate the amount of dimers
and aggregates in the final bulk. The method can discriminate between r-hTBP-1
monomer and its dimer and/or aggregates. This has been proved by testing some r -
hTBP-1 samples after UV treatment, a method widely known to generate aggregate
forms of molecules. Briefly the method is carried out as follows:
3.1.1 Equipment. materials and method
Equipment: Analytical HPLC System
Column: TSK G2000 SWxt cod. 08021 (TosoHaas)
Mobile phase: 0.1M Sodium phosphate pH 6.7,0.1M sodium sulfate
Temperature: 23±3°C
UV detection: 214 nm
Injection volume: 10-100 nl corresponding to 20-30 meg of r-hTBP-1 (by OD)
Injection time: 30 minutes
Standard: BTC10,1.53 mg/ml by OD 280 nm (e= 0.71) 10-20 |j.l injected
r-hTBP-1 bulk: diluted to 1-2 mg/ml by OD 280 nm (e= 0.71) 10-20 |il injected
The purity of the sample is expressed as % of purity of r-hTBP-1 peak / total area ratio.
3.2 IE-HPLC
This method was developed to evaluate the isoform composition in the final
bulk with the aim to replace the chromatofocussing technique generally used for the
above purpose. In contrast to the chromatofocussing, the (EC analysis is more
advantageous because is faster than the above, requires less material (150-200 meg
instead of 1 -2-mg), employes common buffers and does not require pretreatment of the
test sample. Since r-hTBP-1 is a glycoprotein, as a substance of that nature, it is
characterized by different isoforms having each one a different isoelectric point that
determines a different behaviour when tested by an ion exchange analysis. 12 different
peaks, each one corresponding to a glycosilation variant, are obtained. By the present
method all the isoforms of the r-hTBP-1 have been isolated and fully characterized.
Briefly the method is carried out as follows:
3.2.1 Equipment. materials and method
Analytical inert HPLC System
Column: Mono Q HR 5/5
Buffer A: 40 mM Tris/HCI pH 8.5
Buffer B: 40 mM Tris/HCI pH 8.5, 0.3 M NaCI
Gradient:
Step
1
2
3
4
5
6
7
8
Flow rate
ml/min
1
1
1
1
1
1
1
1
Time
(minutes)
0
10
30
40
41
51
52
70
%A
100
90
75
65
0
0
100
100
%B
0
10
25
35
100
100
0
0
Flow rate:
Temperature:
UV detection:
Injection amount
Injection time:
Sample:
1 ml/min
23+3°C
220 nm
10-15 mcl corresponding to 150-200 meg of r-hTBP-1(by OD)
70 minutes
r-hTBP-1 bulk and reference diluted 1:2 with purified water
4. Quantitation of r-hTBP-1 by OD
The concentration of the r-hTBP-1 bulks produced in accordance with the
present invention was determined by optical density at 280 nm using the molar
extinction coefficient (e) calculated in house on r-hTBP-1 bulk produced during the
initial phase of the purification of r-hTBP-1. Three representative r-hTBP1 bulks
produced with the new purification process have been used, obtaining e=0.776. This
new extinction coefficient will be used for the scale up and production phases. Since
the concentration of the bulks is in the range of 20-30 mg/ml, it is necessary dilute the
material to 1 mg/ml with bulk buffer (40 mM PBS pH 7.1 ±0.2, 10 mM NaCI), prior to
test the absorbance at 280 nm.
5. Protein determination by Bradford
The Bradford method was used to quantitate total proteins in the r-hTBP-1 bulk
(see Bradford, MM. Analytical Biochemistry 72:248-254, 1976 and Stoscheck, CM..
Methods in Enzymology 182:50-69,1990). The standard used in this test is BSA.
6. In vitro Bioassay
The bioactivity of r-hTBP-1 consists in its capacity to bind TNFa. This test was used to
assay both the in process samples and bulks.


WE CLAIM:
1. Process for the isolation of a TNF-binding protein comprising eluting a crude solution of the TNF-binding protein on an Immobilized Metal Affinity Chromatography (IMAC) using copper as metal at a pH between 2.8 and 3.2, wherein the TNF-binding protein is a recombinant, extracellular, soluble fragment of human TNF Receptor-1 (recombinant h-TBP-1).
2. The process as claimed in any preceding claims, wherein the elution from the IMAC column is carried out at a conductivity comprised between 14 to 16 mS.
3. The process as claimed in any preceding claim, wherein it optionally comprises the following steps, as intermediate steps: an Ion Exchange Chromatography (IEC) at an acidic pH, preferably between 3 and 4, followed by an ion exchange chromatography at a basic pH, preferably between 8 and 10.
4. The process as claimed in any preceding claim, wherein it optionally comprises, as polishing step, a Hydrophobic Interaction Chromatography (HIC).
5. The process as claimed in any preceding claim, wherein each chromatography step is followed by an utrafiltration step.


Documents:

2024-delnp-2005-abstract-(2-11-2007).pdf

2024-DELNP-2005-Abstract-(22-07-2008).pdf

2024-DELNP-2005-Claims-(03-07-2008).pdf

2024-delnp-2005-claims-(20-07-2007).pdf

2024-DELNP-2005-Claims-(22-07-2008).pdf

2024-DELNP-2005-Correspondence-Others-(03-07-2008).pdf

2024-delnp-2005-correspondence-others-(2-11-2007).pdf

2024-DELNP-2005-Correspondence-Others-(22-07-2008).pdf

2024-delnp-2005-description (complete)-(20-07-2007).pdf

2024-delnp-2005-description (complete)-03-07-2008.pdf

2024-delnp-2005-description (complete)-22-07-2008.pdf

2024-delnp-2005-drawings-(02-11-2007).pdf

2024-delnp-2005-form-1-(2-11-2007).pdf

2024-delnp-2005-form-2-(2-11-2007).pdf

2024-delnp-2005-pct-306-(02-11-2007).pdf


Patent Number 223429
Indian Patent Application Number 2024/DELNP/2005
PG Journal Number 29/2008
Publication Date 26-Sep-2008
Grant Date 10-Sep-2008
Date of Filing 12-May-2005
Name of Patentee ARES TRADING SA
Applicant Address ZONE INDUSTRIELLE DE 1'OURIETTAZ, 1170 AUBONNE, SWITZERLAND.
Inventors:
# Inventor's Name Inventor's Address
1 MARA ROSSI VIA GIUSEPPE MANTELLI 38, I-00179 ROME, ITALY
PCT International Classification Number C07K 14/715
PCT International Application Number PCT/EP2003/050824
PCT International Filing date 2003-11-13
PCT Conventions:
# PCT Application Number Date of Convention Priority Country
1 02025755.6 2002-11-15 EUROPEAN UNION